Wall clock time and date at job start Tue Mar 31 2020 12:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.67024 * 2 1 4 4 C 1.53348 * 109.70141 * 120.51839 * 2 1 3 5 5 C 1.52921 * 108.66939 * 187.28055 * 4 2 1 6 6 N 1.45747 * 110.49153 * 309.24420 * 5 4 2 7 7 C 1.33356 * 124.10232 * 19.07965 * 6 5 4 8 8 O 1.21282 * 118.24339 * 177.77624 * 7 6 5 9 9 C 1.50171 * 123.51100 * 357.77332 * 7 6 5 10 10 H 1.08999 * 109.33145 * 137.67243 * 9 7 6 11 11 N 1.46497 * 109.40061 * 257.45298 * 9 7 6 12 12 C 1.34776 * 120.00451 * 275.42804 * 11 9 7 13 13 O 1.21582 * 119.99644 * 359.97438 * 12 11 9 14 14 N 1.34774 * 120.00279 * 180.02562 * 12 11 9 15 15 C 1.39959 * 120.00239 * 174.29135 * 14 12 11 16 16 C 1.39290 * 119.94396 * 325.43526 * 15 14 12 17 17 C 1.38482 * 120.42871 * 179.97438 * 16 15 14 18 18 C 1.37681 * 120.32262 * 0.02562 * 17 16 15 19 19 C 1.40741 * 119.88315 * 359.97438 * 18 17 16 20 20 C 1.41411 * 120.21258 * 180.02562 * 19 18 17 21 21 H 1.07998 * 119.99795 * 34.18802 * 20 19 18 22 22 C 1.39926 * 120.00265 * 214.19084 * 20 19 18 23 23 N 1.30829 * 120.00411 * 5.55322 * 22 20 19 24 24 Si 1.86804 * 120.00055 * 185.55562 * 22 20 19 25 25 H 1.48497 * 109.47119 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47007 * 120.00017 * 24 22 20 27 27 H 1.48504 * 109.47047 * 239.99964 * 24 22 20 28 28 C 1.38230 * 119.94765 * 145.41334 * 15 14 12 29 29 H 1.09004 * 109.47410 * 180.49623 * 1 2 3 30 30 H 1.09003 * 109.47380 * 300.49414 * 1 2 3 31 31 H 1.08999 * 109.47521 * 60.49784 * 1 2 3 32 32 H 1.08997 * 109.60172 * 307.03898 * 4 2 1 33 33 H 1.08998 * 109.60344 * 67.36565 * 4 2 1 34 34 H 1.09001 * 109.29787 * 69.56341 * 5 4 2 35 35 H 1.09005 * 109.29824 * 189.14038 * 5 4 2 36 36 H 0.96993 * 117.95346 * 199.07227 * 6 5 4 37 37 H 0.97010 * 119.99956 * 95.43103 * 11 9 7 38 38 H 0.97001 * 120.00201 * 354.28801 * 14 12 11 39 39 H 1.07999 * 119.78480 * 359.69941 * 16 15 14 40 40 H 1.08000 * 119.83935 * 180.02562 * 17 16 15 41 41 H 1.08003 * 120.06105 * 179.97438 * 18 17 16 42 42 H 0.97000 * 120.00551 * 180.02562 * 23 22 20 43 43 H 1.07998 * 120.16251 * 0.04603 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0263 0.0000 4 6 2.0470 -0.7331 1.2437 5 6 3.5649 -0.5630 1.3166 6 7 4.1799 -0.9185 0.0439 7 6 3.5211 -0.9781 -1.1140 8 8 4.1473 -1.2460 -2.1175 9 6 2.0453 -0.7315 -1.2419 10 1 1.8566 -0.1219 -2.1256 11 7 1.3477 -2.0127 -1.3766 12 6 1.2336 -2.5939 -2.5872 13 8 1.7093 -2.0547 -3.5676 14 7 0.5914 -3.7723 -2.7112 15 6 0.3681 -4.3174 -3.9808 16 6 0.1137 -3.4781 -5.0629 17 6 -0.1081 -4.0067 -6.3235 18 6 -0.0801 -5.3690 -6.5208 19 6 0.1757 -6.2294 -5.4369 20 6 0.2066 -7.6297 -5.6317 21 1 0.5807 -8.0377 -6.5591 22 6 -0.2474 -8.4867 -4.6231 23 7 -0.8005 -7.9931 -3.5451 24 14 -0.0638 -10.3357 -4.8157 25 1 0.5884 -10.6356 -6.1157 26 1 0.7702 -10.8683 -3.7084 27 1 -1.4045 -10.9730 -4.7763 28 6 0.4008 -5.6878 -4.1588 29 1 -0.3634 -1.0276 0.0089 30 1 -0.3634 0.5215 0.8855 31 1 -0.3634 0.5061 -0.8944 32 1 1.5879 -0.3078 2.1361 33 1 1.7982 -1.7920 1.1738 34 1 3.8001 0.4747 1.5531 35 1 3.9628 -1.2098 2.0986 36 1 5.1277 -1.1244 0.0388 37 1 0.9678 -2.4427 -0.5944 38 1 0.2840 -4.2427 -1.9206 39 1 0.0849 -2.4084 -4.9170 40 1 -0.3041 -3.3471 -7.1559 41 1 -0.2541 -5.7767 -7.5057 42 1 -1.1149 -8.5872 -2.8457 43 1 0.5975 -6.3394 -3.3203 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334726274.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:01 Heat of formation + Delta-G solvation = -70.083701 kcal Electronic energy + Delta-G solvation = -26510.851856 eV Core-core repulsion = 22747.352735 eV Total energy + Delta-G solvation = -3763.499121 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.11004 -40.87675 -39.11617 -38.07317 -36.17909 -35.79086 -35.05962 -33.60515 -31.43769 -30.60074 -29.72204 -28.31516 -27.13976 -24.63105 -23.45551 -23.01219 -22.46389 -21.70598 -20.08107 -19.76654 -19.16292 -18.16698 -17.83073 -17.43342 -17.11662 -16.51138 -16.40444 -16.07417 -15.89426 -15.78852 -15.09307 -14.88923 -14.72737 -14.50215 -14.17173 -14.15359 -13.83706 -13.54101 -13.35396 -13.03102 -12.80531 -12.78282 -12.64327 -12.34440 -12.21225 -11.84826 -11.81347 -11.65486 -11.56493 -11.33578 -11.27811 -11.05058 -10.79485 -10.11508 -10.04811 -9.22824 -8.79946 -8.46571 -6.36843 0.88020 1.05820 1.16489 1.41116 1.50710 1.55326 1.94624 2.06956 2.25879 2.37796 2.83176 3.25793 3.44496 3.59663 3.69634 3.73267 3.86755 4.38455 4.42838 4.46237 4.52943 4.56480 4.71299 4.84045 4.85744 4.97242 5.01172 5.10979 5.13069 5.14560 5.18244 5.23803 5.32490 5.36610 5.43285 5.71646 5.81891 5.83406 5.97448 6.11028 6.12228 6.28753 6.39763 6.69127 6.95796 6.97334 7.04787 7.19162 7.55174 8.44921 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018264 B = 0.003136 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.667014 B = 8925.871681 C = 9401.363534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.110 0.890 4 C -0.133 4.133 5 C 0.102 3.898 6 N -0.709 5.709 7 C 0.494 3.506 8 O -0.594 6.594 9 C 0.161 3.839 10 H 0.089 0.911 11 N -0.709 5.709 12 C 0.696 3.304 13 O -0.600 6.600 14 N -0.671 5.671 15 C 0.166 3.834 16 C -0.227 4.227 17 C -0.089 4.089 18 C -0.240 4.240 19 C 0.093 3.907 20 C -0.504 4.504 21 H 0.073 0.927 22 C 0.034 3.966 23 N -0.837 5.837 24 Si 0.985 3.015 25 H -0.263 1.263 26 H -0.265 1.265 27 H -0.266 1.266 28 C -0.187 4.187 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.126 0.874 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.400 0.600 37 H 0.414 0.586 38 H 0.413 0.587 39 H 0.102 0.898 40 H 0.121 0.879 41 H 0.104 0.896 42 H 0.285 0.715 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.018 13.793 19.764 24.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.128 0.872 4 C -0.170 4.170 5 C -0.021 4.021 6 N -0.360 5.360 7 C 0.279 3.721 8 O -0.474 6.474 9 C 0.052 3.948 10 H 0.107 0.893 11 N -0.369 5.369 12 C 0.396 3.604 13 O -0.477 6.477 14 N -0.319 5.319 15 C 0.072 3.928 16 C -0.249 4.249 17 C -0.108 4.108 18 C -0.260 4.260 19 C 0.090 3.910 20 C -0.535 4.535 21 H 0.091 0.909 22 C -0.178 4.178 23 N -0.465 5.465 24 Si 0.806 3.194 25 H -0.187 1.187 26 H -0.190 1.190 27 H -0.190 1.190 28 C -0.209 4.209 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.144 0.856 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.236 0.764 37 H 0.253 0.747 38 H 0.249 0.751 39 H 0.120 0.880 40 H 0.139 0.861 41 H 0.122 0.878 42 H 0.096 0.904 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.411 14.191 18.652 23.560 hybrid contribution 0.242 -1.371 0.155 1.401 sum 2.653 12.820 18.807 22.915 Atomic orbital electron populations 1.21783 0.92712 1.02630 1.02974 1.21649 0.97857 1.00285 0.91254 0.87161 1.22073 0.94379 1.01550 0.99011 1.21791 0.93872 1.02900 0.83500 1.45612 1.13534 1.68929 1.07959 1.21076 0.91509 0.76461 0.83090 1.90824 1.69149 1.49477 1.37900 1.20835 0.86354 0.85172 1.02455 0.89287 1.44681 1.60815 1.23689 1.07764 1.16153 0.78736 0.81055 0.84427 1.90960 1.52935 1.65292 1.38504 1.42394 1.60050 1.21490 1.07981 1.17459 0.99177 0.91925 0.84281 1.20523 1.13176 0.97945 0.93230 1.20747 0.99095 0.94816 0.96139 1.21326 1.12129 0.93461 0.99038 1.17767 0.88013 0.93959 0.91249 1.19744 1.40092 0.91319 1.02323 0.90876 1.26641 0.91906 1.05758 0.93534 1.69823 1.30258 1.38973 1.07443 0.85118 0.78912 0.76036 0.79329 1.18681 1.19025 1.19028 1.20994 1.09556 0.91299 0.99096 0.92510 0.89226 0.93544 0.85586 0.91280 0.88986 0.88036 0.76448 0.74690 0.75074 0.87970 0.86144 0.87822 0.90425 0.87112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.91 71.98 0.64 -0.87 16 2 C -0.09 -1.03 2.58 -10.65 -0.03 -1.05 16 3 H 0.11 0.94 8.13 -2.39 -0.02 0.92 16 4 C -0.13 -0.76 5.28 30.68 0.16 -0.60 16 5 C 0.10 0.65 7.17 86.49 0.62 1.27 16 6 N -0.71 -12.12 5.45 -467.32 -2.55 -14.67 16 7 C 0.49 13.91 7.24 87.71 0.63 14.55 16 8 O -0.59 -25.04 17.36 -3.02 -0.05 -25.10 16 9 C 0.16 3.86 2.27 44.10 0.10 3.96 16 10 H 0.09 2.70 7.58 -2.39 -0.02 2.68 16 11 N -0.71 -18.64 4.21 -462.12 -1.95 -20.58 16 12 C 0.70 27.31 8.23 179.06 1.47 28.79 16 13 O -0.60 -29.77 13.36 -3.96 -0.05 -29.83 16 14 N -0.67 -26.88 5.34 -317.33 -1.69 -28.57 16 15 C 0.17 8.27 6.24 38.09 0.24 8.51 16 16 C -0.23 -11.53 8.65 22.58 0.20 -11.33 16 17 C -0.09 -4.40 10.02 22.20 0.22 -4.18 16 18 C -0.24 -12.62 9.79 22.75 0.22 -12.40 16 19 C 0.09 5.25 5.50 -21.31 -0.12 5.14 16 20 C -0.50 -28.09 9.04 23.46 0.21 -27.87 16 21 H 0.07 3.97 7.85 -2.91 -0.02 3.95 16 22 C 0.03 1.75 5.31 85.25 0.45 2.20 16 23 N -0.84 -43.48 10.96 21.82 0.24 -43.24 16 24 Si 0.98 39.10 29.56 68.60 2.03 41.13 16 25 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 26 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 27 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 28 C -0.19 -10.17 8.54 22.85 0.20 -9.98 16 29 H 0.06 0.65 6.79 -2.38 -0.02 0.63 16 30 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 33 H 0.07 0.50 6.96 -2.39 -0.02 0.49 16 34 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.10 0.26 8.14 -2.38 -0.02 0.24 16 36 H 0.40 6.64 8.80 -92.71 -0.82 5.83 16 37 H 0.41 7.64 6.58 -92.70 -0.61 7.03 16 38 H 0.41 13.53 8.84 -92.71 -0.82 12.71 16 39 H 0.10 5.15 6.51 -2.91 -0.02 5.13 16 40 H 0.12 5.11 8.06 -2.91 -0.02 5.08 16 41 H 0.10 5.09 8.06 -2.91 -0.02 5.07 16 42 H 0.29 13.29 8.30 -92.71 -0.77 12.52 16 43 H 0.11 6.11 6.46 -2.91 -0.02 6.09 16 Total: -1.00 -83.49 351.95 0.03 -83.45 By element: Atomic # 1 Polarization: 42.44 SS G_CDS: -1.17 Total: 41.27 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 5.23 Total: -3.87 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -5.95 Total: -107.06 kcal Atomic # 8 Polarization: -54.82 SS G_CDS: -0.11 Total: -54.92 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -83.49 0.03 -83.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334726274.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.371 kcal (2) G-P(sol) polarization free energy of solvation -83.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds