Wall clock time and date at job start Tue Mar 31 2020 12:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.70118 * 2 1 4 4 C 1.53347 * 109.67260 * 120.51243 * 2 1 3 5 5 C 1.52927 * 108.81223 * 187.34473 * 4 2 1 6 6 N 1.45755 * 110.48360 * 309.17086 * 5 4 2 7 7 C 1.33356 * 124.11159 * 19.09050 * 6 5 4 8 8 O 1.21280 * 118.24214 * 177.78070 * 7 6 5 9 9 C 1.50174 * 123.50731 * 357.75588 * 7 6 5 10 10 H 1.09000 * 109.40366 * 257.45517 * 9 7 6 11 11 N 1.46503 * 109.40087 * 137.62260 * 9 7 6 12 12 C 1.34780 * 119.99365 * 85.00113 * 11 9 7 13 13 O 1.21582 * 120.00245 * 359.97438 * 12 11 9 14 14 N 1.34779 * 119.99477 * 179.97438 * 12 11 9 15 15 C 1.39959 * 119.99678 * 174.84081 * 14 12 11 16 16 C 1.39280 * 119.94419 * 145.59977 * 15 14 12 17 17 C 1.38489 * 120.42856 * 179.97438 * 16 15 14 18 18 C 1.37686 * 120.32393 * 359.97438 * 17 16 15 19 19 C 1.40747 * 119.87688 * 359.97438 * 18 17 16 20 20 C 1.41413 * 120.20487 * 179.97438 * 19 18 17 21 21 H 1.07991 * 120.00007 * 25.24894 * 20 19 18 22 22 C 1.39931 * 119.99434 * 205.25152 * 20 19 18 23 23 N 1.30829 * 120.00205 * 16.71463 * 22 20 19 24 24 Si 1.86803 * 119.99670 * 196.70853 * 22 20 19 25 25 H 1.48505 * 109.46903 * 90.00014 * 24 22 20 26 26 H 1.48500 * 109.47116 * 210.00278 * 24 22 20 27 27 H 1.48497 * 109.47170 * 330.00551 * 24 22 20 28 28 C 1.38234 * 119.94672 * 325.32383 * 15 14 12 29 29 H 1.09001 * 109.47244 * 299.48414 * 1 2 3 30 30 H 1.09002 * 109.47243 * 59.48771 * 1 2 3 31 31 H 1.09007 * 109.47304 * 179.49062 * 1 2 3 32 32 H 1.08999 * 109.60793 * 67.50993 * 4 2 1 33 33 H 1.09000 * 109.60956 * 307.18468 * 4 2 1 34 34 H 1.09004 * 109.29399 * 69.47521 * 5 4 2 35 35 H 1.08994 * 109.30548 * 188.85344 * 5 4 2 36 36 H 0.97011 * 117.94343 * 199.06972 * 6 5 4 37 37 H 0.97000 * 120.00170 * 265.00477 * 11 9 7 38 38 H 0.97002 * 119.99970 * 354.85003 * 14 12 11 39 39 H 1.08009 * 119.78972 * 359.97438 * 16 15 14 40 40 H 1.08005 * 119.83772 * 179.97438 * 17 16 15 41 41 H 1.07998 * 120.05736 * 180.02562 * 18 17 16 42 42 H 0.96999 * 119.99715 * 179.97438 * 23 22 20 43 43 H 1.08001 * 120.16212 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0461 -0.7331 1.2440 5 6 3.5641 -0.5641 1.3216 6 7 4.1827 -0.9210 0.0510 7 6 3.5276 -0.9808 -1.1090 8 8 4.1568 -1.2500 -2.1102 9 6 2.0523 -0.7332 -1.2417 10 1 1.5329 -1.6861 -1.3431 11 7 1.8014 0.0867 -2.4296 12 6 1.6820 -0.4974 -3.6385 13 8 1.7830 -1.7044 -3.7431 14 7 1.4506 0.2568 -4.7312 15 6 1.4340 -0.3352 -5.9993 16 6 0.5660 0.1424 -6.9783 17 6 0.5416 -0.4355 -8.2366 18 6 1.3764 -1.4893 -8.5338 19 6 2.2596 -1.9819 -7.5549 20 6 3.1196 -3.0642 -7.8525 21 1 3.4130 -3.2557 -8.8740 22 6 3.5903 -3.8872 -6.8233 23 7 3.0008 -3.8762 -5.6554 24 14 5.0605 -5.0015 -7.1170 25 1 6.3089 -4.2755 -6.7709 26 1 4.9408 -6.2133 -6.2670 27 1 5.1007 -5.4016 -8.5465 28 6 2.2831 -1.3893 -6.2799 29 1 -0.3634 0.5058 0.8946 30 1 -0.3634 0.5218 -0.8854 31 1 -0.3634 -1.0277 -0.0091 32 1 1.7994 -1.7925 1.1730 33 1 1.5849 -0.3094 2.1361 34 1 3.7993 0.4737 1.5579 35 1 3.9586 -1.2077 2.1078 36 1 5.1305 -1.1277 0.0490 37 1 1.7213 1.0497 -2.3462 38 1 1.2958 1.2100 -4.6388 39 1 -0.0924 0.9690 -6.7547 40 1 -0.1356 -0.0578 -8.9884 41 1 1.3541 -1.9366 -9.5166 42 1 3.3269 -4.4470 -4.9422 43 1 2.9594 -1.7577 -5.5228 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334726275.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:06 Heat of formation + Delta-G solvation = -38.502345 kcal Electronic energy + Delta-G solvation = -27063.370833 eV Core-core repulsion = 23301.241183 eV Total energy + Delta-G solvation = -3762.129650 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.71049 -39.17552 -37.12731 -36.83270 -34.90345 -33.96755 -32.98557 -32.51853 -29.44770 -29.26617 -28.22442 -26.96528 -25.06085 -23.71781 -21.89907 -21.44137 -20.63359 -19.81292 -19.39138 -17.85274 -17.42141 -17.05941 -16.50686 -16.10727 -15.32105 -14.84439 -14.57315 -14.52102 -14.38283 -14.16004 -13.88137 -13.50096 -13.46367 -13.01946 -12.80533 -12.59844 -12.41070 -12.07776 -11.94353 -11.59830 -11.41770 -11.17038 -11.03275 -10.98698 -10.93146 -10.58355 -10.37757 -9.98909 -9.82333 -9.54676 -9.16376 -9.08670 -8.81466 -8.79332 -8.61817 -7.18189 -6.72481 -6.36079 -4.10176 2.61300 2.94251 3.10655 3.23142 3.25529 3.27705 3.38646 3.40277 4.06661 4.15607 4.28648 4.36896 4.43889 4.57672 4.83557 4.90495 4.99040 5.05231 5.16945 5.35768 5.44339 5.54293 5.56413 5.63176 5.87976 5.91981 6.02074 6.34713 6.60095 6.62974 6.81368 6.90237 7.00185 7.20479 7.32237 7.34544 7.47045 7.59567 7.92250 8.05358 8.13042 8.31062 8.37296 8.54705 8.72555 8.87651 9.14530 9.21274 9.42879 10.48287 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.004515 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.587236 B = 6200.263850 C = 7855.419021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 H 0.081 0.919 4 C -0.130 4.130 5 C 0.112 3.888 6 N -0.729 5.729 7 C 0.494 3.506 8 O -0.510 6.510 9 C 0.166 3.834 10 H 0.119 0.881 11 N -0.737 5.737 12 C 0.691 3.309 13 O -0.518 6.518 14 N -0.684 5.684 15 C 0.161 3.839 16 C -0.272 4.272 17 C -0.080 4.080 18 C -0.244 4.244 19 C 0.120 3.880 20 C -0.467 4.467 21 H 0.076 0.924 22 C 0.072 3.928 23 N -0.749 5.749 24 Si 0.900 3.100 25 H -0.270 1.270 26 H -0.280 1.280 27 H -0.264 1.264 28 C -0.156 4.156 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.396 0.604 37 H 0.391 0.609 38 H 0.388 0.612 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.280 0.720 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.021 9.436 18.750 21.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 H 0.100 0.900 4 C -0.169 4.169 5 C -0.013 4.013 6 N -0.385 5.385 7 C 0.278 3.722 8 O -0.383 6.383 9 C 0.056 3.944 10 H 0.137 0.863 11 N -0.395 5.395 12 C 0.391 3.609 13 O -0.388 6.388 14 N -0.331 5.331 15 C 0.068 3.932 16 C -0.293 4.293 17 C -0.099 4.099 18 C -0.264 4.264 19 C 0.117 3.883 20 C -0.496 4.496 21 H 0.094 0.906 22 C -0.150 4.150 23 N -0.372 5.372 24 Si 0.725 3.275 25 H -0.195 1.195 26 H -0.205 1.205 27 H -0.188 1.188 28 C -0.178 4.178 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.231 0.769 37 H 0.224 0.776 38 H 0.221 0.779 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.092 0.908 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.842 8.039 18.342 20.111 hybrid contribution 0.921 0.394 0.248 1.032 sum -0.922 8.433 18.591 20.435 Atomic orbital electron populations 1.21799 0.93424 1.02794 1.02204 1.21586 0.97288 0.99916 0.93121 0.90022 1.21940 0.94417 1.02179 0.98317 1.21328 0.93721 1.00552 0.85704 1.45612 1.13290 1.71968 1.07603 1.20888 0.91147 0.77258 0.82912 1.90893 1.67217 1.45105 1.35067 1.20579 0.91334 0.97703 0.84811 0.86328 1.44849 1.79743 1.09309 1.05636 1.16006 0.78796 0.86171 0.79926 1.91158 1.53024 1.11052 1.83540 1.42494 1.75560 1.10190 1.04842 1.17364 0.97218 0.96804 0.81792 1.19944 1.06498 1.07472 0.95413 1.20239 0.98330 0.96484 0.94876 1.20939 1.02574 1.02836 1.00005 1.17486 0.89524 0.90677 0.90628 1.19500 1.25527 1.10083 0.94485 0.90625 1.25947 0.96758 0.97495 0.94766 1.69894 1.33847 1.30891 1.02533 0.86450 0.82402 0.79483 0.79143 1.19521 1.20509 1.18844 1.21465 1.00677 0.96643 0.98967 0.92169 0.91889 0.92050 0.90410 0.89284 0.91928 0.90662 0.76865 0.77601 0.77901 0.89664 0.89387 0.89216 0.90845 0.84247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.14 37.15 0.34 -0.75 16 2 C -0.10 -0.81 2.31 -90.25 -0.21 -1.02 16 3 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 4 C -0.13 -0.80 5.30 -26.59 -0.14 -0.94 16 5 C 0.11 0.71 7.17 -4.48 -0.03 0.67 16 6 N -0.73 -7.86 5.45 -61.39 -0.33 -8.19 16 7 C 0.49 7.72 7.44 -11.87 -0.09 7.63 16 8 O -0.51 -11.24 16.58 4.59 0.08 -11.16 16 9 C 0.17 2.25 2.09 -69.14 -0.14 2.10 16 10 H 0.12 1.89 7.53 -51.93 -0.39 1.50 16 11 N -0.74 -11.05 4.74 -59.87 -0.28 -11.34 16 12 C 0.69 14.56 7.72 -86.91 -0.67 13.89 16 13 O -0.52 -13.67 13.34 4.32 0.06 -13.62 16 14 N -0.68 -13.99 5.34 -14.27 -0.08 -14.07 16 15 C 0.16 4.04 6.25 -83.76 -0.52 3.51 16 16 C -0.27 -6.37 9.97 -39.10 -0.39 -6.76 16 17 C -0.08 -1.92 10.02 -39.69 -0.40 -2.32 16 18 C -0.24 -6.44 9.79 -38.84 -0.38 -6.82 16 19 C 0.12 3.50 5.57 -106.85 -0.59 2.91 16 20 C -0.47 -13.56 9.05 -37.74 -0.34 -13.90 16 21 H 0.08 2.09 7.90 -52.49 -0.41 1.68 16 22 C 0.07 2.01 5.16 -17.35 -0.09 1.92 16 23 N -0.75 -22.13 10.95 55.55 0.61 -21.52 16 24 Si 0.90 20.88 29.59 -169.99 -5.03 15.85 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 28 C -0.16 -4.52 7.28 -38.69 -0.28 -4.80 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.53 8.01 -51.93 -0.42 0.11 16 31 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.40 4.10 8.80 -40.82 -0.36 3.74 16 37 H 0.39 4.41 8.60 -40.82 -0.35 4.06 16 38 H 0.39 6.16 8.84 -40.82 -0.36 5.80 16 39 H 0.09 1.73 8.06 -52.48 -0.42 1.30 16 40 H 0.09 1.81 8.06 -52.48 -0.42 1.38 16 41 H 0.09 2.23 8.06 -52.49 -0.42 1.80 16 42 H 0.28 7.86 8.30 -40.82 -0.34 7.53 16 43 H 0.14 4.42 4.62 -52.49 -0.24 4.17 16 LS Contribution 355.27 15.07 5.35 5.35 Total: -1.00 -38.14 355.27 -9.47 -47.60 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -5.89 Total: 15.75 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -3.94 Total: -4.65 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.09 Total: -55.12 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: 0.13 Total: -24.78 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.14 -9.47 -47.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334726275.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.101 kcal (2) G-P(sol) polarization free energy of solvation -38.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds