Wall clock time and date at job start Tue Mar 31 2020 12:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.70118 * 2 1 4 4 C 1.53347 * 109.67260 * 120.51243 * 2 1 3 5 5 C 1.52927 * 108.81223 * 187.34473 * 4 2 1 6 6 N 1.45755 * 110.48360 * 309.17086 * 5 4 2 7 7 C 1.33356 * 124.11159 * 19.09050 * 6 5 4 8 8 O 1.21280 * 118.24214 * 177.78070 * 7 6 5 9 9 C 1.50174 * 123.50731 * 357.75588 * 7 6 5 10 10 H 1.09000 * 109.40366 * 257.45517 * 9 7 6 11 11 N 1.46503 * 109.40087 * 137.62260 * 9 7 6 12 12 C 1.34780 * 119.99365 * 85.00113 * 11 9 7 13 13 O 1.21582 * 120.00245 * 359.97438 * 12 11 9 14 14 N 1.34779 * 119.99477 * 179.97438 * 12 11 9 15 15 C 1.39959 * 119.99678 * 174.84081 * 14 12 11 16 16 C 1.39280 * 119.94419 * 145.59977 * 15 14 12 17 17 C 1.38489 * 120.42856 * 179.97438 * 16 15 14 18 18 C 1.37686 * 120.32393 * 359.97438 * 17 16 15 19 19 C 1.40747 * 119.87688 * 359.97438 * 18 17 16 20 20 C 1.41413 * 120.20487 * 179.97438 * 19 18 17 21 21 H 1.07991 * 120.00007 * 25.24894 * 20 19 18 22 22 C 1.39931 * 119.99434 * 205.25152 * 20 19 18 23 23 N 1.30829 * 120.00205 * 16.71463 * 22 20 19 24 24 Si 1.86803 * 119.99670 * 196.70853 * 22 20 19 25 25 H 1.48505 * 109.46903 * 90.00014 * 24 22 20 26 26 H 1.48500 * 109.47116 * 210.00278 * 24 22 20 27 27 H 1.48497 * 109.47170 * 330.00551 * 24 22 20 28 28 C 1.38234 * 119.94672 * 325.32383 * 15 14 12 29 29 H 1.09001 * 109.47244 * 299.48414 * 1 2 3 30 30 H 1.09002 * 109.47243 * 59.48771 * 1 2 3 31 31 H 1.09007 * 109.47304 * 179.49062 * 1 2 3 32 32 H 1.08999 * 109.60793 * 67.50993 * 4 2 1 33 33 H 1.09000 * 109.60956 * 307.18468 * 4 2 1 34 34 H 1.09004 * 109.29399 * 69.47521 * 5 4 2 35 35 H 1.08994 * 109.30548 * 188.85344 * 5 4 2 36 36 H 0.97011 * 117.94343 * 199.06972 * 6 5 4 37 37 H 0.97000 * 120.00170 * 265.00477 * 11 9 7 38 38 H 0.97002 * 119.99970 * 354.85003 * 14 12 11 39 39 H 1.08009 * 119.78972 * 359.97438 * 16 15 14 40 40 H 1.08005 * 119.83772 * 179.97438 * 17 16 15 41 41 H 1.07998 * 120.05736 * 180.02562 * 18 17 16 42 42 H 0.96999 * 119.99715 * 179.97438 * 23 22 20 43 43 H 1.08001 * 120.16212 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0461 -0.7331 1.2440 5 6 3.5641 -0.5641 1.3216 6 7 4.1827 -0.9210 0.0510 7 6 3.5276 -0.9808 -1.1090 8 8 4.1568 -1.2500 -2.1102 9 6 2.0523 -0.7332 -1.2417 10 1 1.5329 -1.6861 -1.3431 11 7 1.8014 0.0867 -2.4296 12 6 1.6820 -0.4974 -3.6385 13 8 1.7830 -1.7044 -3.7431 14 7 1.4506 0.2568 -4.7312 15 6 1.4340 -0.3352 -5.9993 16 6 0.5660 0.1424 -6.9783 17 6 0.5416 -0.4355 -8.2366 18 6 1.3764 -1.4893 -8.5338 19 6 2.2596 -1.9819 -7.5549 20 6 3.1196 -3.0642 -7.8525 21 1 3.4130 -3.2557 -8.8740 22 6 3.5903 -3.8872 -6.8233 23 7 3.0008 -3.8762 -5.6554 24 14 5.0605 -5.0015 -7.1170 25 1 6.3089 -4.2755 -6.7709 26 1 4.9408 -6.2133 -6.2670 27 1 5.1007 -5.4016 -8.5465 28 6 2.2831 -1.3893 -6.2799 29 1 -0.3634 0.5058 0.8946 30 1 -0.3634 0.5218 -0.8854 31 1 -0.3634 -1.0277 -0.0091 32 1 1.7994 -1.7925 1.1730 33 1 1.5849 -0.3094 2.1361 34 1 3.7993 0.4737 1.5579 35 1 3.9586 -1.2077 2.1078 36 1 5.1305 -1.1277 0.0490 37 1 1.7213 1.0497 -2.3462 38 1 1.2958 1.2100 -4.6388 39 1 -0.0924 0.9690 -6.7547 40 1 -0.1356 -0.0578 -8.9884 41 1 1.3541 -1.9366 -9.5166 42 1 3.3269 -4.4470 -4.9422 43 1 2.9594 -1.7577 -5.5228 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334726275.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:05 Heat of formation + Delta-G solvation = -68.833688 kcal Electronic energy + Delta-G solvation = -27064.686099 eV Core-core repulsion = 23301.241183 eV Total energy + Delta-G solvation = -3763.444916 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.92582 -40.75250 -38.96231 -37.92210 -36.18432 -35.81150 -34.91990 -33.67014 -31.41697 -30.44836 -29.59258 -28.18553 -27.14578 -24.61746 -23.33732 -22.77859 -22.40695 -21.37876 -20.52672 -19.64024 -18.85427 -18.32955 -17.72703 -17.52286 -17.02481 -16.46033 -16.34124 -15.84284 -15.65512 -15.45109 -15.21233 -14.86869 -14.72811 -14.54492 -14.15581 -13.97977 -13.75070 -13.43147 -13.22049 -12.97965 -12.85868 -12.67234 -12.61222 -12.30731 -12.21617 -11.87671 -11.82668 -11.71797 -11.51458 -11.23327 -11.12009 -10.80850 -10.68649 -10.03152 -9.99450 -9.25575 -8.70641 -8.39389 -6.27897 0.95052 1.15035 1.30726 1.39531 1.45767 1.49801 1.92498 2.19731 2.21519 2.50825 2.86099 3.34733 3.46593 3.62660 3.79819 3.82532 3.93807 4.27403 4.49432 4.52457 4.53538 4.63519 4.75237 4.85396 4.93660 4.97099 5.01276 5.08010 5.14638 5.24781 5.30869 5.31279 5.38933 5.45069 5.47867 5.81256 5.87016 5.93103 6.05207 6.20575 6.27683 6.34039 6.49280 6.75031 7.01221 7.12752 7.19490 7.26610 7.81497 8.40016 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.004515 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.587236 B = 6200.263850 C = 7855.419021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 H 0.105 0.895 4 C -0.128 4.128 5 C 0.102 3.898 6 N -0.714 5.714 7 C 0.489 3.511 8 O -0.591 6.591 9 C 0.163 3.837 10 H 0.087 0.913 11 N -0.714 5.714 12 C 0.685 3.315 13 O -0.575 6.575 14 N -0.674 5.674 15 C 0.161 3.839 16 C -0.257 4.257 17 C -0.077 4.077 18 C -0.259 4.259 19 C 0.085 3.915 20 C -0.506 4.506 21 H 0.077 0.923 22 C 0.024 3.976 23 N -0.789 5.789 24 Si 0.975 3.025 25 H -0.271 1.271 26 H -0.272 1.272 27 H -0.247 1.247 28 C -0.190 4.190 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.130 0.870 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.398 0.602 37 H 0.412 0.588 38 H 0.413 0.587 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.098 0.902 42 H 0.275 0.725 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.120 12.041 20.909 24.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 H 0.123 0.877 4 C -0.166 4.166 5 C -0.020 4.020 6 N -0.366 5.366 7 C 0.274 3.726 8 O -0.470 6.470 9 C 0.054 3.946 10 H 0.105 0.895 11 N -0.372 5.372 12 C 0.385 3.615 13 O -0.449 6.449 14 N -0.323 5.323 15 C 0.067 3.933 16 C -0.279 4.279 17 C -0.096 4.096 18 C -0.279 4.279 19 C 0.082 3.918 20 C -0.535 4.535 21 H 0.095 0.905 22 C -0.193 4.193 23 N -0.413 5.413 24 Si 0.796 3.204 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.171 1.171 28 C -0.212 4.212 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.148 0.852 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.233 0.767 37 H 0.249 0.751 38 H 0.250 0.750 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.116 0.884 42 H 0.086 0.914 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.968 10.740 20.604 23.424 hybrid contribution 1.146 -0.241 -0.302 1.209 sum -1.822 10.499 20.303 22.929 Atomic orbital electron populations 1.21801 0.92690 1.02233 1.03278 1.21621 0.97710 1.00442 0.90760 0.87691 1.22026 0.94334 1.01598 0.98627 1.21781 0.93781 1.02833 0.83615 1.45645 1.13432 1.69544 1.07970 1.21257 0.91819 0.76398 0.83170 1.90868 1.68862 1.49128 1.38105 1.20802 0.90153 0.97276 0.86415 0.89536 1.44559 1.78000 1.10478 1.04209 1.16323 0.78231 0.85626 0.81339 1.91137 1.55228 1.13889 1.84639 1.42279 1.75290 1.11325 1.03429 1.17538 0.96183 0.95763 0.83845 1.20438 1.05309 1.07601 0.94504 1.20719 0.97707 0.95089 0.96068 1.21178 1.02880 1.03974 0.99888 1.17886 0.90745 0.91457 0.91695 1.19771 1.27518 1.11316 0.94928 0.90492 1.26846 0.99386 0.98889 0.94141 1.70058 1.35627 1.32139 1.03431 0.85331 0.77916 0.77350 0.79847 1.19669 1.19633 1.17052 1.21291 1.02350 0.99007 0.98509 0.88981 0.92909 0.93468 0.91592 0.85229 0.89062 0.87998 0.76660 0.75076 0.75013 0.85214 0.85015 0.88391 0.91450 0.87799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.14 71.98 0.66 -1.12 16 2 C -0.09 -1.17 2.31 -10.55 -0.02 -1.19 16 3 H 0.10 1.01 8.10 -2.39 -0.02 0.99 16 4 C -0.13 -1.11 5.30 30.69 0.16 -0.95 16 5 C 0.10 0.93 7.17 86.50 0.62 1.55 16 6 N -0.71 -14.79 5.45 -467.31 -2.55 -17.33 16 7 C 0.49 15.83 7.44 87.71 0.65 16.48 16 8 O -0.59 -28.04 16.58 -2.10 -0.03 -28.08 16 9 C 0.16 4.51 2.09 44.21 0.09 4.60 16 10 H 0.09 2.98 7.53 -2.39 -0.02 2.96 16 11 N -0.71 -21.62 4.74 -461.59 -2.19 -23.80 16 12 C 0.68 30.01 7.72 179.05 1.38 31.40 16 13 O -0.57 -32.62 13.34 -3.05 -0.04 -32.66 16 14 N -0.67 -27.64 5.34 -317.33 -1.70 -29.33 16 15 C 0.16 8.15 6.25 38.09 0.24 8.39 16 16 C -0.26 -11.46 9.97 22.58 0.23 -11.23 16 17 C -0.08 -3.53 10.02 22.20 0.22 -3.30 16 18 C -0.26 -13.85 9.79 22.75 0.22 -13.63 16 19 C 0.09 5.20 5.57 -21.31 -0.12 5.08 16 20 C -0.51 -31.07 9.05 23.46 0.21 -30.85 16 21 H 0.08 4.48 7.90 -2.92 -0.02 4.46 16 22 C 0.02 1.44 5.16 85.25 0.44 1.88 16 23 N -0.79 -50.21 10.95 21.82 0.24 -49.97 16 24 Si 0.97 45.32 29.59 68.60 2.03 47.35 16 25 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 27 H -0.25 -10.68 7.11 99.48 0.71 -9.98 16 28 C -0.19 -11.57 7.28 22.85 0.17 -11.40 16 29 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.77 8.01 -2.39 -0.02 0.75 16 31 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.07 0.78 8.12 -2.39 -0.02 0.76 16 33 H 0.13 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.40 8.12 8.80 -92.70 -0.82 7.31 16 37 H 0.41 8.71 8.60 -92.71 -0.80 7.91 16 38 H 0.41 12.39 8.84 -92.71 -0.82 11.57 16 39 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 40 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 41 H 0.10 4.92 8.06 -2.91 -0.02 4.89 16 42 H 0.28 16.78 8.30 -92.71 -0.77 16.01 16 43 H 0.10 7.12 4.62 -2.91 -0.01 7.11 16 Total: -1.00 -94.34 355.27 -0.45 -94.78 By element: Atomic # 1 Polarization: 44.71 SS G_CDS: -1.36 Total: 43.35 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 5.15 Total: -4.30 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -6.19 Total: -120.45 kcal Atomic # 8 Polarization: -60.66 SS G_CDS: -0.08 Total: -60.74 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -94.34 -0.45 -94.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334726275.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.948 kcal (2) G-P(sol) polarization free energy of solvation -94.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds