Wall clock time and date at job start Tue Mar 31 2020 12:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.69901 * 2 1 4 4 C 1.53345 * 109.66670 * 239.46013 * 2 1 3 5 5 C 1.52925 * 108.68207 * 172.74666 * 4 2 1 6 6 N 1.45748 * 110.48691 * 50.74068 * 5 4 2 7 7 C 1.33354 * 124.10870 * 340.94212 * 6 5 4 8 8 O 1.21286 * 118.24679 * 182.20560 * 7 6 5 9 9 C 1.50175 * 123.50573 * 2.22549 * 7 6 5 10 10 H 1.09002 * 109.39654 * 102.43995 * 9 7 6 11 11 N 1.46502 * 109.40205 * 222.26595 * 9 7 6 12 12 C 1.34781 * 120.00063 * 275.00473 * 11 9 7 13 13 O 1.21585 * 119.99838 * 359.97438 * 12 11 9 14 14 N 1.34771 * 119.99849 * 179.97438 * 12 11 9 15 15 C 1.39961 * 119.99672 * 183.17882 * 14 12 11 16 16 C 1.39294 * 119.94653 * 142.51560 * 15 14 12 17 17 C 1.38482 * 120.43146 * 180.27367 * 16 15 14 18 18 C 1.37691 * 120.31758 * 359.44816 * 17 16 15 19 19 C 1.40738 * 119.88379 * 0.56854 * 18 17 16 20 20 C 1.41408 * 120.21121 * 179.68057 * 19 18 17 21 21 H 1.08003 * 119.99799 * 158.25763 * 20 19 18 22 22 C 1.39932 * 120.00145 * 338.26455 * 20 19 18 23 23 N 1.30829 * 119.99622 * 327.92494 * 22 20 19 24 24 Si 1.86793 * 120.00276 * 147.92165 * 22 20 19 25 25 H 1.48505 * 109.46800 * 94.98439 * 24 22 20 26 26 H 1.48497 * 109.47313 * 214.98310 * 24 22 20 27 27 H 1.48495 * 109.47227 * 334.98869 * 24 22 20 28 28 C 1.38224 * 119.95037 * 322.53672 * 15 14 12 29 29 H 1.09002 * 109.47419 * 299.49251 * 1 2 3 30 30 H 1.09004 * 109.46967 * 59.48755 * 1 2 3 31 31 H 1.09000 * 109.47041 * 179.48445 * 1 2 3 32 32 H 1.08997 * 109.61181 * 52.98175 * 4 2 1 33 33 H 1.08993 * 109.71780 * 292.57862 * 4 2 1 34 34 H 1.08992 * 109.29923 * 290.42491 * 5 4 2 35 35 H 1.08998 * 109.12956 * 170.94504 * 5 4 2 36 36 H 0.97004 * 117.94637 * 160.92233 * 6 5 4 37 37 H 0.96994 * 120.00251 * 94.99670 * 11 9 7 38 38 H 0.96998 * 120.00468 * 3.18481 * 14 12 11 39 39 H 1.08004 * 119.78174 * 0.02562 * 16 15 14 40 40 H 1.07994 * 119.84091 * 179.69568 * 17 16 15 41 41 H 1.07991 * 120.05464 * 180.27563 * 18 17 16 42 42 H 0.96996 * 120.00320 * 180.02562 * 23 22 20 43 43 H 1.08008 * 120.15803 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0461 -0.7337 -1.2437 5 6 3.5642 -0.5648 -1.3173 6 7 4.1793 -0.9202 -0.0447 7 6 3.5209 -0.9792 1.1135 8 8 4.1474 -1.2474 2.1168 9 6 2.0453 -0.7318 1.2417 10 1 1.5257 -1.6849 1.3405 11 7 1.7905 0.0868 2.4297 12 6 1.6673 -0.4984 3.6376 13 8 1.7671 -1.7057 3.7412 14 7 1.4335 0.2548 4.7305 15 6 1.3717 -0.3451 5.9935 16 6 1.8960 0.3143 7.1029 17 6 1.8454 -0.2724 8.3563 18 6 1.2654 -1.5102 8.5214 19 6 0.7319 -2.1886 7.4096 20 6 0.1408 -3.4631 7.5702 21 1 -0.5619 -3.8288 6.8361 22 6 0.4663 -4.2505 8.6802 23 7 1.6631 -4.1800 9.2039 24 14 -0.8081 -5.4021 9.4144 25 1 -0.6336 -6.7619 8.8435 26 1 -0.6342 -5.4580 10.8881 27 1 -2.1694 -4.9022 9.0951 28 6 0.7910 -1.5911 6.1381 29 1 -0.3634 0.5059 0.8945 30 1 -0.3633 0.5218 -0.8854 31 1 -0.3633 -1.0276 -0.0092 32 1 1.5871 -0.3085 -2.1361 33 1 1.7989 -1.7930 -1.1747 34 1 3.8001 0.4725 -1.5544 35 1 3.9580 -1.2120 -2.1010 36 1 5.1270 -1.1270 -0.0399 37 1 1.7106 1.0499 2.3471 38 1 1.3079 1.2125 4.6418 39 1 2.3485 1.2877 6.9840 40 1 2.2592 0.2452 9.2090 41 1 1.2243 -1.9618 9.5015 42 1 1.8889 -4.7260 9.9731 43 1 0.3849 -2.1035 5.2784 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334726276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:10 Heat of formation + Delta-G solvation = -43.699974 kcal Electronic energy + Delta-G solvation = -26398.452533 eV Core-core repulsion = 22636.097497 eV Total energy + Delta-G solvation = -3762.355037 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.85982 -39.35351 -37.22920 -36.95206 -35.07306 -34.20731 -33.09134 -32.55130 -29.73393 -29.45304 -28.25823 -27.02854 -25.15788 -23.81093 -22.00137 -21.47798 -20.73107 -20.02787 -19.60423 -17.88069 -17.62131 -17.28887 -16.63046 -16.18858 -15.33241 -15.02402 -14.71984 -14.59092 -14.49072 -14.38686 -13.98589 -13.71087 -13.55034 -13.17333 -12.92841 -12.78900 -12.48767 -12.14255 -12.01290 -11.66501 -11.56539 -11.32515 -11.23787 -11.09627 -10.98296 -10.62465 -10.44085 -10.10205 -10.01114 -9.64040 -9.39006 -9.19998 -9.07539 -8.79734 -8.67169 -7.37777 -6.77463 -6.76623 -4.17452 2.48148 2.85252 3.01811 3.03362 3.14433 3.18817 3.29741 3.33640 3.88012 4.02297 4.19900 4.28374 4.34916 4.46136 4.65907 4.69740 4.91027 4.97364 5.08115 5.28894 5.37081 5.44352 5.49009 5.56954 5.79706 5.83099 5.95592 6.35737 6.47073 6.55799 6.69624 6.89362 6.93452 7.14480 7.20681 7.22389 7.27823 7.46082 7.80114 7.97696 8.10300 8.20119 8.23582 8.36054 8.56919 8.75090 9.00192 9.10538 9.21786 10.20751 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018682 B = 0.003083 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.425961 B = 9079.282121 C = 9464.699503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 H 0.083 0.917 4 C -0.130 4.130 5 C 0.111 3.889 6 N -0.727 5.727 7 C 0.496 3.504 8 O -0.517 6.517 9 C 0.164 3.836 10 H 0.120 0.880 11 N -0.735 5.735 12 C 0.703 3.297 13 O -0.548 6.548 14 N -0.681 5.681 15 C 0.175 3.825 16 C -0.272 4.272 17 C -0.084 4.084 18 C -0.191 4.191 19 C 0.124 3.876 20 C -0.466 4.466 21 H 0.080 0.920 22 C 0.088 3.912 23 N -0.770 5.770 24 Si 0.895 3.105 25 H -0.270 1.270 26 H -0.275 1.275 27 H -0.258 1.258 28 C -0.211 4.211 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.397 0.603 37 H 0.394 0.606 38 H 0.392 0.608 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.281 0.719 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.611 10.233 -20.988 23.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 H 0.101 0.899 4 C -0.169 4.169 5 C -0.014 4.014 6 N -0.383 5.383 7 C 0.280 3.720 8 O -0.390 6.390 9 C 0.054 3.946 10 H 0.138 0.862 11 N -0.392 5.392 12 C 0.403 3.597 13 O -0.421 6.421 14 N -0.328 5.328 15 C 0.083 3.917 16 C -0.294 4.294 17 C -0.103 4.103 18 C -0.211 4.211 19 C 0.121 3.879 20 C -0.494 4.494 21 H 0.098 0.902 22 C -0.133 4.133 23 N -0.394 5.394 24 Si 0.719 3.281 25 H -0.196 1.196 26 H -0.200 1.200 27 H -0.182 1.182 28 C -0.233 4.233 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.232 0.768 37 H 0.227 0.773 38 H 0.225 0.775 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.092 0.908 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.258 8.886 -20.164 22.037 hybrid contribution 0.071 0.345 0.152 0.384 sum -0.187 9.231 -20.012 22.040 Atomic orbital electron populations 1.21819 0.93316 1.02858 1.02358 1.21542 0.97439 0.99968 0.93000 0.89889 1.21949 0.94391 1.02198 0.98335 1.21356 0.93799 1.00680 0.85563 1.45593 1.13320 1.71738 1.07603 1.20868 0.91092 0.77138 0.82938 1.90871 1.67521 1.45569 1.35010 1.20567 0.91391 0.97797 0.84875 0.86224 1.44795 1.79318 1.09525 1.05567 1.15864 0.77956 0.85848 0.80012 1.91003 1.55126 1.11963 1.83970 1.42495 1.75176 1.09956 1.05185 1.17209 0.98813 0.94418 0.81226 1.19957 1.14590 1.01816 0.92990 1.20360 0.99304 0.95715 0.94918 1.21046 1.06743 0.94765 0.98563 1.17420 0.88277 0.92314 0.89904 1.19477 1.23284 1.00225 1.06459 0.90209 1.25905 0.94689 0.96814 0.95879 1.69962 1.17916 1.33002 1.18473 0.86527 0.82778 0.80229 0.78583 1.19575 1.20005 1.18189 1.20936 1.08845 0.96473 0.97020 0.91826 0.92069 0.91989 0.89141 0.90341 0.91764 0.90533 0.76760 0.77253 0.77484 0.89517 0.89239 0.87769 0.90800 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.12 37.16 0.34 -0.65 16 2 C -0.10 -0.72 2.31 -90.41 -0.21 -0.93 16 3 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 4 C -0.13 -0.68 5.31 -26.59 -0.14 -0.82 16 5 C 0.11 0.59 7.17 -4.49 -0.03 0.56 16 6 N -0.73 -7.03 5.45 -61.39 -0.33 -7.36 16 7 C 0.50 7.17 7.44 -11.87 -0.09 7.09 16 8 O -0.52 -10.73 16.58 4.65 0.08 -10.65 16 9 C 0.16 2.04 2.07 -69.30 -0.14 1.90 16 10 H 0.12 1.75 7.52 -51.93 -0.39 1.36 16 11 N -0.73 -10.24 4.70 -60.03 -0.28 -10.52 16 12 C 0.70 14.08 7.81 -86.92 -0.68 13.40 16 13 O -0.55 -13.94 13.20 4.38 0.06 -13.88 16 14 N -0.68 -13.28 5.34 -14.27 -0.08 -13.36 16 15 C 0.18 4.28 6.24 -83.76 -0.52 3.76 16 16 C -0.27 -6.44 9.97 -39.10 -0.39 -6.83 16 17 C -0.08 -2.08 10.02 -39.69 -0.40 -2.48 16 18 C -0.19 -5.27 8.79 -38.84 -0.34 -5.61 16 19 C 0.12 3.58 5.57 -106.85 -0.60 2.98 16 20 C -0.47 -13.34 8.96 -37.74 -0.34 -13.68 16 21 H 0.08 2.23 8.01 -52.48 -0.42 1.81 16 22 C 0.09 2.35 4.79 -17.34 -0.08 2.27 16 23 N -0.77 -21.13 11.74 55.55 0.65 -20.48 16 24 Si 0.90 19.42 29.66 -169.99 -5.04 14.37 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 26 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 27 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 28 C -0.21 -5.83 8.41 -38.69 -0.33 -6.15 16 29 H 0.06 0.49 7.97 -51.93 -0.41 0.08 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.47 8.13 -51.93 -0.42 0.04 16 34 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.40 3.63 8.80 -40.82 -0.36 3.27 16 37 H 0.39 4.00 8.60 -40.82 -0.35 3.65 16 38 H 0.39 5.83 8.84 -40.82 -0.36 5.47 16 39 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 40 H 0.09 1.95 8.06 -52.49 -0.42 1.53 16 41 H 0.10 2.89 6.50 -52.49 -0.34 2.55 16 42 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 43 H 0.11 3.08 6.44 -52.48 -0.34 2.74 16 LS Contribution 356.00 15.07 5.36 5.36 Total: -1.00 -38.14 356.00 -9.44 -47.59 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -5.91 Total: 14.11 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -3.95 Total: -5.19 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -0.04 Total: -51.72 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: 0.13 Total: -24.53 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.04 Total: 14.37 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -38.14 -9.44 -47.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334726276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.886 kcal (2) G-P(sol) polarization free energy of solvation -38.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds