Wall clock time and date at job start Tue Mar 31 2020 12:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.69901 * 2 1 4 4 C 1.53345 * 109.66670 * 239.46013 * 2 1 3 5 5 C 1.52925 * 108.68207 * 172.74666 * 4 2 1 6 6 N 1.45748 * 110.48691 * 50.74068 * 5 4 2 7 7 C 1.33354 * 124.10870 * 340.94212 * 6 5 4 8 8 O 1.21286 * 118.24679 * 182.20560 * 7 6 5 9 9 C 1.50175 * 123.50573 * 2.22549 * 7 6 5 10 10 H 1.09002 * 109.39654 * 102.43995 * 9 7 6 11 11 N 1.46502 * 109.40205 * 222.26595 * 9 7 6 12 12 C 1.34781 * 120.00063 * 275.00473 * 11 9 7 13 13 O 1.21585 * 119.99838 * 359.97438 * 12 11 9 14 14 N 1.34771 * 119.99849 * 179.97438 * 12 11 9 15 15 C 1.39961 * 119.99672 * 183.17882 * 14 12 11 16 16 C 1.39294 * 119.94653 * 142.51560 * 15 14 12 17 17 C 1.38482 * 120.43146 * 180.27367 * 16 15 14 18 18 C 1.37691 * 120.31758 * 359.44816 * 17 16 15 19 19 C 1.40738 * 119.88379 * 0.56854 * 18 17 16 20 20 C 1.41408 * 120.21121 * 179.68057 * 19 18 17 21 21 H 1.08003 * 119.99799 * 158.25763 * 20 19 18 22 22 C 1.39932 * 120.00145 * 338.26455 * 20 19 18 23 23 N 1.30829 * 119.99622 * 327.92494 * 22 20 19 24 24 Si 1.86793 * 120.00276 * 147.92165 * 22 20 19 25 25 H 1.48505 * 109.46800 * 94.98439 * 24 22 20 26 26 H 1.48497 * 109.47313 * 214.98310 * 24 22 20 27 27 H 1.48495 * 109.47227 * 334.98869 * 24 22 20 28 28 C 1.38224 * 119.95037 * 322.53672 * 15 14 12 29 29 H 1.09002 * 109.47419 * 299.49251 * 1 2 3 30 30 H 1.09004 * 109.46967 * 59.48755 * 1 2 3 31 31 H 1.09000 * 109.47041 * 179.48445 * 1 2 3 32 32 H 1.08997 * 109.61181 * 52.98175 * 4 2 1 33 33 H 1.08993 * 109.71780 * 292.57862 * 4 2 1 34 34 H 1.08992 * 109.29923 * 290.42491 * 5 4 2 35 35 H 1.08998 * 109.12956 * 170.94504 * 5 4 2 36 36 H 0.97004 * 117.94637 * 160.92233 * 6 5 4 37 37 H 0.96994 * 120.00251 * 94.99670 * 11 9 7 38 38 H 0.96998 * 120.00468 * 3.18481 * 14 12 11 39 39 H 1.08004 * 119.78174 * 0.02562 * 16 15 14 40 40 H 1.07994 * 119.84091 * 179.69568 * 17 16 15 41 41 H 1.07991 * 120.05464 * 180.27563 * 18 17 16 42 42 H 0.96996 * 120.00320 * 180.02562 * 23 22 20 43 43 H 1.08008 * 120.15803 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0461 -0.7337 -1.2437 5 6 3.5642 -0.5648 -1.3173 6 7 4.1793 -0.9202 -0.0447 7 6 3.5209 -0.9792 1.1135 8 8 4.1474 -1.2474 2.1168 9 6 2.0453 -0.7318 1.2417 10 1 1.5257 -1.6849 1.3405 11 7 1.7905 0.0868 2.4297 12 6 1.6673 -0.4984 3.6376 13 8 1.7671 -1.7057 3.7412 14 7 1.4335 0.2548 4.7305 15 6 1.3717 -0.3451 5.9935 16 6 1.8960 0.3143 7.1029 17 6 1.8454 -0.2724 8.3563 18 6 1.2654 -1.5102 8.5214 19 6 0.7319 -2.1886 7.4096 20 6 0.1408 -3.4631 7.5702 21 1 -0.5619 -3.8288 6.8361 22 6 0.4663 -4.2505 8.6802 23 7 1.6631 -4.1800 9.2039 24 14 -0.8081 -5.4021 9.4144 25 1 -0.6336 -6.7619 8.8435 26 1 -0.6342 -5.4580 10.8881 27 1 -2.1694 -4.9022 9.0951 28 6 0.7910 -1.5911 6.1381 29 1 -0.3634 0.5059 0.8945 30 1 -0.3633 0.5218 -0.8854 31 1 -0.3633 -1.0276 -0.0092 32 1 1.5871 -0.3085 -2.1361 33 1 1.7989 -1.7930 -1.1747 34 1 3.8001 0.4725 -1.5544 35 1 3.9580 -1.2120 -2.1010 36 1 5.1270 -1.1270 -0.0399 37 1 1.7106 1.0499 2.3471 38 1 1.3079 1.2125 4.6418 39 1 2.3485 1.2877 6.9840 40 1 2.2592 0.2452 9.2090 41 1 1.2243 -1.9618 9.5015 42 1 1.8889 -4.7260 9.9731 43 1 0.3849 -2.1035 5.2784 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334726276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:09 Heat of formation + Delta-G solvation = -73.842768 kcal Electronic energy + Delta-G solvation = -26399.759623 eV Core-core repulsion = 22636.097497 eV Total energy + Delta-G solvation = -3763.662126 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.01793 -40.85573 -39.05718 -37.96320 -36.35876 -35.94249 -34.91160 -33.69088 -31.78289 -30.47503 -29.58489 -28.21547 -27.21531 -24.64548 -23.32027 -22.78602 -22.58977 -21.59213 -20.60482 -19.63047 -19.09562 -18.36277 -17.68932 -17.52562 -17.16130 -16.55529 -16.41714 -16.02604 -15.75378 -15.53036 -15.19678 -15.04504 -14.83548 -14.61358 -14.18711 -14.05870 -13.73636 -13.53415 -13.29191 -13.23307 -12.81214 -12.68148 -12.56860 -12.32226 -12.22529 -11.97173 -11.83295 -11.74295 -11.59889 -11.32963 -11.24699 -10.97394 -10.63698 -10.09274 -10.04545 -9.44627 -8.77949 -8.70946 -6.31694 0.93303 1.04658 1.29399 1.34784 1.45644 1.55732 1.83403 2.12265 2.20655 2.42125 2.65727 3.26055 3.44569 3.59268 3.72956 3.78929 3.92536 4.24962 4.46563 4.49290 4.51998 4.62274 4.66443 4.86194 4.97166 4.99960 5.00603 5.07293 5.11285 5.12869 5.21401 5.24324 5.30610 5.35271 5.44237 5.71863 5.82883 5.85759 6.04836 6.07189 6.16766 6.29723 6.36180 6.66137 6.91808 7.02329 7.08864 7.21677 7.64057 8.23891 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018682 B = 0.003083 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.425961 B = 9079.282121 C = 9464.699503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.107 0.893 4 C -0.128 4.128 5 C 0.102 3.898 6 N -0.711 5.711 7 C 0.491 3.509 8 O -0.594 6.594 9 C 0.159 3.841 10 H 0.090 0.910 11 N -0.709 5.709 12 C 0.698 3.302 13 O -0.608 6.608 14 N -0.670 5.670 15 C 0.181 3.819 16 C -0.264 4.264 17 C -0.082 4.082 18 C -0.217 4.217 19 C 0.095 3.905 20 C -0.513 4.513 21 H 0.067 0.933 22 C 0.048 3.952 23 N -0.806 5.806 24 Si 0.978 3.022 25 H -0.262 1.262 26 H -0.257 1.257 27 H -0.257 1.257 28 C -0.242 4.242 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.129 0.871 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.400 0.600 37 H 0.416 0.584 38 H 0.417 0.583 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.093 0.907 42 H 0.293 0.707 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.779 12.618 -23.127 26.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 H 0.126 0.874 4 C -0.166 4.166 5 C -0.021 4.021 6 N -0.363 5.363 7 C 0.276 3.724 8 O -0.474 6.474 9 C 0.050 3.950 10 H 0.107 0.893 11 N -0.367 5.367 12 C 0.399 3.601 13 O -0.485 6.485 14 N -0.319 5.319 15 C 0.087 3.913 16 C -0.285 4.285 17 C -0.101 4.101 18 C -0.236 4.236 19 C 0.092 3.908 20 C -0.541 4.541 21 H 0.085 0.915 22 C -0.171 4.171 23 N -0.429 5.429 24 Si 0.797 3.203 25 H -0.187 1.187 26 H -0.180 1.180 27 H -0.181 1.181 28 C -0.264 4.264 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.147 0.853 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.121 0.879 36 H 0.236 0.764 37 H 0.254 0.746 38 H 0.255 0.745 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.424 11.376 -22.433 25.156 hybrid contribution 0.220 -0.289 0.604 0.705 sum -0.205 11.086 -21.829 24.484 Atomic orbital electron populations 1.21828 0.92842 1.02317 1.03251 1.21582 0.97653 1.00615 0.90747 0.87439 1.22034 0.94402 1.01641 0.98556 1.21797 0.93757 1.02958 0.83543 1.45620 1.13491 1.69263 1.07905 1.21170 0.91631 0.76369 0.83230 1.90838 1.69071 1.49528 1.37945 1.20820 0.90424 0.97432 0.86358 0.89264 1.44518 1.77419 1.10761 1.04030 1.16151 0.77419 0.85161 0.81403 1.90973 1.57572 1.14905 1.85089 1.42243 1.74844 1.11111 1.03671 1.17307 0.97003 0.93457 0.83524 1.20382 1.13042 1.03078 0.92014 1.20761 0.97924 0.94713 0.96712 1.21049 1.08672 0.96253 0.97660 1.17777 0.89059 0.93089 0.90887 1.19690 1.24643 1.01409 1.08315 0.91518 1.26818 0.96616 0.98307 0.95318 1.69968 1.19592 1.34257 1.19122 0.85297 0.79111 0.77601 0.78284 1.18666 1.18041 1.18098 1.20892 1.11095 0.98415 0.95957 0.93003 0.89015 0.93388 0.85268 0.91465 0.88911 0.87901 0.76430 0.74622 0.74500 0.85368 0.85808 0.88861 0.89618 0.89856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.12 71.98 0.66 -0.97 16 2 C -0.09 -1.01 2.31 -10.66 -0.02 -1.03 16 3 H 0.11 0.80 8.10 -2.39 -0.02 0.78 16 4 C -0.13 -0.87 5.31 30.68 0.16 -0.70 16 5 C 0.10 0.69 7.17 86.50 0.62 1.31 16 6 N -0.71 -12.70 5.45 -467.33 -2.55 -15.25 16 7 C 0.49 14.41 7.44 87.71 0.65 15.06 16 8 O -0.59 -25.99 16.58 -2.18 -0.04 -26.02 16 9 C 0.16 4.00 2.07 44.10 0.09 4.09 16 10 H 0.09 2.83 7.52 -2.39 -0.02 2.81 16 11 N -0.71 -19.73 4.70 -462.09 -2.17 -21.90 16 12 C 0.70 28.96 7.81 179.05 1.40 30.36 16 13 O -0.61 -33.20 13.20 -3.12 -0.04 -33.24 16 14 N -0.67 -26.15 5.34 -317.33 -1.69 -27.84 16 15 C 0.18 8.99 6.24 38.09 0.24 9.23 16 16 C -0.26 -12.16 9.97 22.58 0.23 -11.93 16 17 C -0.08 -4.04 10.02 22.20 0.22 -3.81 16 18 C -0.22 -12.33 8.79 22.75 0.20 -12.13 16 19 C 0.09 5.81 5.57 -21.31 -0.12 5.69 16 20 C -0.51 -31.31 8.96 23.46 0.21 -31.10 16 21 H 0.07 4.06 8.01 -2.91 -0.02 4.03 16 22 C 0.05 2.64 4.79 85.25 0.41 3.05 16 23 N -0.81 -45.74 11.74 21.82 0.26 -45.48 16 24 Si 0.98 41.07 29.66 68.60 2.03 43.10 16 25 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 26 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 27 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 28 C -0.24 -14.18 8.41 22.85 0.19 -13.99 16 29 H 0.05 0.71 7.97 -2.39 -0.02 0.69 16 30 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.13 0.01 8.14 -2.39 -0.02 -0.01 16 33 H 0.07 0.65 8.13 -2.39 -0.02 0.63 16 34 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.40 6.92 8.80 -92.71 -0.82 6.10 16 37 H 0.42 7.69 8.60 -92.71 -0.80 6.89 16 38 H 0.42 11.69 8.84 -92.71 -0.82 10.87 16 39 H 0.13 4.83 8.06 -2.91 -0.02 4.80 16 40 H 0.12 5.13 8.06 -2.91 -0.02 5.11 16 41 H 0.09 5.40 6.50 -2.92 -0.02 5.38 16 42 H 0.29 14.72 8.30 -92.71 -0.77 13.95 16 43 H 0.08 5.19 6.44 -2.91 -0.02 5.17 16 Total: -1.00 -93.26 356.00 -0.42 -93.68 By element: Atomic # 1 Polarization: 41.19 SS G_CDS: -1.36 Total: 39.83 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 5.14 Total: -6.89 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -6.16 Total: -110.47 kcal Atomic # 8 Polarization: -59.18 SS G_CDS: -0.08 Total: -59.26 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -93.26 -0.42 -93.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334726276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.841 kcal (2) G-P(sol) polarization free energy of solvation -93.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds