Wall clock time and date at job start Tue Mar 31 2020 12:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.70193 * 2 1 4 4 C 1.53353 * 109.67013 * 239.49007 * 2 1 3 5 5 C 1.52917 * 108.67491 * 172.73230 * 4 2 1 6 6 N 1.45760 * 110.48867 * 50.75193 * 5 4 2 7 7 C 1.33356 * 124.10309 * 340.92766 * 6 5 4 8 8 O 1.21284 * 118.24320 * 182.22100 * 7 6 5 9 9 C 1.50173 * 123.50864 * 2.21966 * 7 6 5 10 10 H 1.09009 * 109.40205 * 222.28977 * 9 7 6 11 11 N 1.46497 * 109.40016 * 102.55128 * 9 7 6 12 12 C 1.34777 * 120.00618 * 84.57254 * 11 9 7 13 13 O 1.21588 * 119.99687 * 359.97438 * 12 11 9 14 14 N 1.34775 * 120.00548 * 180.02562 * 12 11 9 15 15 C 1.39952 * 119.99978 * 174.83777 * 14 12 11 16 16 C 1.39293 * 119.94764 * 145.61123 * 15 14 12 17 17 C 1.38484 * 120.43105 * 179.97438 * 16 15 14 18 18 C 1.37681 * 120.32333 * 359.95167 * 17 16 15 19 19 C 1.40746 * 119.88236 * 0.02816 * 18 17 16 20 20 C 1.41404 * 120.21170 * 180.02562 * 19 18 17 21 21 H 1.07999 * 119.99676 * 25.22629 * 20 19 18 22 22 C 1.39928 * 120.00100 * 205.21925 * 20 19 18 23 23 N 1.30829 * 119.99952 * 16.71635 * 22 20 19 24 24 Si 1.86799 * 120.00130 * 196.70942 * 22 20 19 25 25 H 1.48499 * 109.47177 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.47467 * 120.00726 * 24 22 20 27 27 H 1.48506 * 109.47294 * 240.00377 * 24 22 20 28 28 C 1.38231 * 119.94668 * 325.33152 * 15 14 12 29 29 H 1.09004 * 109.46801 * 299.47244 * 1 2 3 30 30 H 1.08995 * 109.47757 * 59.47617 * 1 2 3 31 31 H 1.09007 * 109.46902 * 179.48375 * 1 2 3 32 32 H 1.08997 * 109.60010 * 292.49249 * 4 2 1 33 33 H 1.08996 * 109.60358 * 52.97840 * 4 2 1 34 34 H 1.08994 * 109.30194 * 171.06517 * 5 4 2 35 35 H 1.08999 * 109.30477 * 290.64987 * 5 4 2 36 36 H 0.96992 * 117.94731 * 160.92305 * 6 5 4 37 37 H 0.97003 * 119.99650 * 264.56598 * 11 9 7 38 38 H 0.96999 * 119.99253 * 354.83212 * 14 12 11 39 39 H 1.07998 * 119.77968 * 359.97438 * 16 15 14 40 40 H 1.08006 * 119.83954 * 179.97438 * 17 16 15 41 41 H 1.07997 * 120.06188 * 180.02562 * 18 17 16 42 42 H 0.97001 * 119.99968 * 179.97438 * 23 22 20 43 43 H 1.07997 * 120.16321 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0462 -0.7331 -1.2441 5 6 3.5642 -0.5637 -1.3176 6 7 4.1795 -0.9198 -0.0451 7 6 3.5211 -0.9794 1.1130 8 8 4.1476 -1.2478 2.1162 9 6 2.0455 -0.7320 1.2415 10 1 1.8560 -0.1231 2.1256 11 7 1.3473 -2.0128 1.3762 12 6 1.2333 -2.5943 2.5868 13 8 1.7104 -2.0560 3.5670 14 7 0.5914 -3.7729 2.7106 15 6 0.5662 -4.4295 3.9463 16 6 -0.5575 -5.1620 4.3217 17 6 -0.5931 -5.8160 5.5418 18 6 0.4836 -5.7501 6.3975 19 6 1.6261 -5.0141 6.0315 20 6 2.7360 -4.9421 6.9047 21 1 2.9068 -5.7269 7.6267 22 6 3.6131 -3.8542 6.8332 23 7 3.2506 -2.7615 6.2117 24 14 5.3013 -3.9619 7.6254 25 1 5.4662 -5.2942 8.2601 26 1 6.3476 -3.7752 6.5883 27 1 5.4326 -2.9018 8.6571 28 6 1.6588 -4.3549 4.7898 29 1 -0.3633 0.5056 0.8947 30 1 -0.3634 0.5219 -0.8852 31 1 -0.3633 -1.0277 -0.0093 32 1 1.7994 -1.7924 -1.1730 33 1 1.5871 -0.3073 -2.1363 34 1 3.9610 -1.2078 -2.1023 35 1 3.8000 0.4747 -1.5503 36 1 5.1272 -1.1263 -0.0405 37 1 0.9669 -2.4424 0.5941 38 1 0.1469 -4.1659 1.9433 39 1 -1.4066 -5.2201 3.6568 40 1 -1.4695 -6.3809 5.8234 41 1 0.4515 -6.2621 7.3478 42 1 3.8585 -2.0072 6.1625 43 1 2.5324 -3.7913 4.4975 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334726277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:14 Heat of formation + Delta-G solvation = -35.909752 kcal Electronic energy + Delta-G solvation = -27184.174220 eV Core-core repulsion = 23422.156992 eV Total energy + Delta-G solvation = -3762.017227 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.82530 -39.19734 -37.24287 -36.82619 -34.86063 -34.00570 -32.99746 -32.41115 -29.49414 -29.30444 -28.25342 -27.05633 -25.07305 -23.83017 -21.87701 -21.57791 -20.78123 -19.81822 -19.01475 -18.13605 -17.32626 -17.05305 -16.48493 -15.90770 -15.38751 -15.13584 -14.73625 -14.50376 -14.45096 -14.18065 -13.74231 -13.51533 -13.45671 -12.85865 -12.85619 -12.61033 -12.58393 -12.15424 -12.04198 -11.50125 -11.45297 -11.20167 -11.04696 -10.91588 -10.89906 -10.60400 -10.38073 -10.02515 -9.84953 -9.55981 -9.19409 -9.08930 -8.84131 -8.82041 -8.64307 -7.19942 -6.75328 -6.37152 -4.11346 2.50096 2.93151 3.12659 3.23060 3.25638 3.30359 3.37845 3.42278 4.01060 4.15495 4.30289 4.35075 4.38674 4.57364 4.77085 4.89072 4.96117 5.07313 5.17567 5.34873 5.43521 5.49534 5.52148 5.71765 5.86486 5.90167 6.00263 6.32670 6.58021 6.63724 6.77208 6.87728 6.95312 7.17307 7.31236 7.33536 7.43932 7.57225 7.89602 8.03120 8.09765 8.28892 8.35868 8.51587 8.68635 8.84744 9.13257 9.19143 9.37079 10.47853 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013658 B = 0.004603 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.556997 B = 6081.604287 C = 7690.978282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 H 0.091 0.909 4 C -0.134 4.134 5 C 0.112 3.888 6 N -0.728 5.728 7 C 0.496 3.504 8 O -0.510 6.510 9 C 0.167 3.833 10 H 0.119 0.881 11 N -0.738 5.738 12 C 0.682 3.318 13 O -0.510 6.510 14 N -0.683 5.683 15 C 0.160 3.840 16 C -0.272 4.272 17 C -0.079 4.079 18 C -0.244 4.244 19 C 0.121 3.879 20 C -0.466 4.466 21 H 0.076 0.924 22 C 0.071 3.929 23 N -0.747 5.747 24 Si 0.899 3.101 25 H -0.262 1.262 26 H -0.274 1.274 27 H -0.276 1.276 28 C -0.158 4.158 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.396 0.604 37 H 0.390 0.610 38 H 0.388 0.612 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.282 0.718 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.521 6.893 -19.908 21.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 H 0.110 0.890 4 C -0.172 4.172 5 C -0.012 4.012 6 N -0.383 5.383 7 C 0.280 3.720 8 O -0.381 6.381 9 C 0.057 3.943 10 H 0.137 0.863 11 N -0.399 5.399 12 C 0.382 3.618 13 O -0.379 6.379 14 N -0.331 5.331 15 C 0.068 3.932 16 C -0.294 4.294 17 C -0.098 4.098 18 C -0.264 4.264 19 C 0.117 3.883 20 C -0.495 4.495 21 H 0.094 0.906 22 C -0.151 4.151 23 N -0.369 5.369 24 Si 0.723 3.277 25 H -0.186 1.186 26 H -0.199 1.199 27 H -0.201 1.201 28 C -0.179 4.179 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.231 0.769 37 H 0.224 0.776 38 H 0.221 0.779 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.878 7.602 -18.447 20.041 hybrid contribution 0.708 -0.406 -0.675 1.059 sum -1.170 7.196 -19.123 20.465 Atomic orbital electron populations 1.21757 0.93444 1.02534 1.02294 1.21630 0.97422 0.99988 0.93315 0.89038 1.21982 0.94625 1.01710 0.98838 1.21325 0.93713 1.00578 0.85632 1.45597 1.13296 1.71804 1.07629 1.20819 0.90997 0.77389 0.82838 1.90907 1.67460 1.44892 1.34878 1.20631 0.87018 0.86226 1.00446 0.86315 1.44996 1.62121 1.23849 1.08932 1.16132 0.80579 0.81523 0.83585 1.91216 1.48978 1.62656 1.35048 1.42509 1.57338 1.21202 1.12013 1.17360 0.95044 0.95898 0.84922 1.19930 0.97478 1.12107 0.99897 1.20239 0.96971 0.98724 0.93897 1.20936 0.95204 1.10457 0.99774 1.17483 0.91201 0.88743 0.90837 1.19527 1.07494 1.05687 1.16821 0.90596 1.25955 0.99446 0.94863 0.94813 1.69877 1.35193 1.01890 1.29944 0.86423 0.82716 0.79124 0.79398 1.18622 1.19901 1.20141 1.21436 0.97706 1.04750 0.94034 0.91860 0.92221 0.92175 0.90953 0.89452 0.90757 0.91786 0.76893 0.77556 0.77922 0.89674 0.89384 0.89206 0.90645 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.91 37.16 0.33 -0.72 16 2 C -0.10 -0.84 2.58 -90.40 -0.23 -1.07 16 3 H 0.09 0.66 8.13 -51.93 -0.42 0.24 16 4 C -0.13 -0.79 5.28 -26.59 -0.14 -0.93 16 5 C 0.11 0.71 7.17 -4.48 -0.03 0.67 16 6 N -0.73 -7.86 5.45 -61.39 -0.33 -8.19 16 7 C 0.50 7.77 7.24 -11.87 -0.09 7.68 16 8 O -0.51 -11.30 17.35 5.54 0.10 -11.21 16 9 C 0.17 2.26 2.27 -69.31 -0.16 2.10 16 10 H 0.12 1.95 7.58 -51.92 -0.39 1.55 16 11 N -0.74 -10.55 4.21 -60.03 -0.25 -10.81 16 12 C 0.68 14.01 8.24 -86.92 -0.72 13.29 16 13 O -0.51 -13.37 13.34 5.27 0.07 -13.30 16 14 N -0.68 -13.56 5.34 -14.27 -0.08 -13.63 16 15 C 0.16 3.95 6.25 -83.76 -0.52 3.43 16 16 C -0.27 -6.30 9.97 -39.10 -0.39 -6.69 16 17 C -0.08 -1.88 10.02 -39.69 -0.40 -2.27 16 18 C -0.24 -6.39 9.79 -38.84 -0.38 -6.77 16 19 C 0.12 3.49 5.57 -106.84 -0.59 2.90 16 20 C -0.47 -13.46 9.05 -37.75 -0.34 -13.81 16 21 H 0.08 2.09 7.90 -52.49 -0.41 1.68 16 22 C 0.07 1.98 5.15 -17.35 -0.09 1.89 16 23 N -0.75 -22.09 10.95 55.55 0.61 -21.48 16 24 Si 0.90 20.85 29.59 -169.99 -5.03 15.81 16 25 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 C -0.16 -4.51 7.28 -38.68 -0.28 -4.79 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.44 6.79 -51.92 -0.35 0.09 16 32 H 0.07 0.46 6.96 -51.93 -0.36 0.09 16 33 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.40 4.13 8.80 -40.82 -0.36 3.77 16 37 H 0.39 4.11 6.58 -40.82 -0.27 3.84 16 38 H 0.39 5.90 8.84 -40.82 -0.36 5.54 16 39 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 41 H 0.09 2.22 8.06 -52.49 -0.42 1.79 16 42 H 0.28 7.98 8.30 -40.82 -0.34 7.64 16 43 H 0.14 4.30 4.63 -52.49 -0.24 4.06 16 LS Contribution 351.70 15.07 5.30 5.30 Total: -1.00 -37.88 351.70 -9.34 -47.22 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -5.69 Total: 15.37 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -4.03 Total: -5.08 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.05 Total: -54.11 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: 0.17 Total: -24.51 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -37.88 -9.34 -47.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334726277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.309 kcal (2) G-P(sol) polarization free energy of solvation -37.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds