Wall clock time and date at job start Tue Mar 31 2020 12:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.70193 * 2 1 4 4 C 1.53353 * 109.67013 * 239.49007 * 2 1 3 5 5 C 1.52917 * 108.67491 * 172.73230 * 4 2 1 6 6 N 1.45760 * 110.48867 * 50.75193 * 5 4 2 7 7 C 1.33356 * 124.10309 * 340.92766 * 6 5 4 8 8 O 1.21284 * 118.24320 * 182.22100 * 7 6 5 9 9 C 1.50173 * 123.50864 * 2.21966 * 7 6 5 10 10 H 1.09009 * 109.40205 * 222.28977 * 9 7 6 11 11 N 1.46497 * 109.40016 * 102.55128 * 9 7 6 12 12 C 1.34777 * 120.00618 * 84.57254 * 11 9 7 13 13 O 1.21588 * 119.99687 * 359.97438 * 12 11 9 14 14 N 1.34775 * 120.00548 * 180.02562 * 12 11 9 15 15 C 1.39952 * 119.99978 * 174.83777 * 14 12 11 16 16 C 1.39293 * 119.94764 * 145.61123 * 15 14 12 17 17 C 1.38484 * 120.43105 * 179.97438 * 16 15 14 18 18 C 1.37681 * 120.32333 * 359.95167 * 17 16 15 19 19 C 1.40746 * 119.88236 * 0.02816 * 18 17 16 20 20 C 1.41404 * 120.21170 * 180.02562 * 19 18 17 21 21 H 1.07999 * 119.99676 * 25.22629 * 20 19 18 22 22 C 1.39928 * 120.00100 * 205.21925 * 20 19 18 23 23 N 1.30829 * 119.99952 * 16.71635 * 22 20 19 24 24 Si 1.86799 * 120.00130 * 196.70942 * 22 20 19 25 25 H 1.48499 * 109.47177 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.47467 * 120.00726 * 24 22 20 27 27 H 1.48506 * 109.47294 * 240.00377 * 24 22 20 28 28 C 1.38231 * 119.94668 * 325.33152 * 15 14 12 29 29 H 1.09004 * 109.46801 * 299.47244 * 1 2 3 30 30 H 1.08995 * 109.47757 * 59.47617 * 1 2 3 31 31 H 1.09007 * 109.46902 * 179.48375 * 1 2 3 32 32 H 1.08997 * 109.60010 * 292.49249 * 4 2 1 33 33 H 1.08996 * 109.60358 * 52.97840 * 4 2 1 34 34 H 1.08994 * 109.30194 * 171.06517 * 5 4 2 35 35 H 1.08999 * 109.30477 * 290.64987 * 5 4 2 36 36 H 0.96992 * 117.94731 * 160.92305 * 6 5 4 37 37 H 0.97003 * 119.99650 * 264.56598 * 11 9 7 38 38 H 0.96999 * 119.99253 * 354.83212 * 14 12 11 39 39 H 1.07998 * 119.77968 * 359.97438 * 16 15 14 40 40 H 1.08006 * 119.83954 * 179.97438 * 17 16 15 41 41 H 1.07997 * 120.06188 * 180.02562 * 18 17 16 42 42 H 0.97001 * 119.99968 * 179.97438 * 23 22 20 43 43 H 1.07997 * 120.16321 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0462 -0.7331 -1.2441 5 6 3.5642 -0.5637 -1.3176 6 7 4.1795 -0.9198 -0.0451 7 6 3.5211 -0.9794 1.1130 8 8 4.1476 -1.2478 2.1162 9 6 2.0455 -0.7320 1.2415 10 1 1.8560 -0.1231 2.1256 11 7 1.3473 -2.0128 1.3762 12 6 1.2333 -2.5943 2.5868 13 8 1.7104 -2.0560 3.5670 14 7 0.5914 -3.7729 2.7106 15 6 0.5662 -4.4295 3.9463 16 6 -0.5575 -5.1620 4.3217 17 6 -0.5931 -5.8160 5.5418 18 6 0.4836 -5.7501 6.3975 19 6 1.6261 -5.0141 6.0315 20 6 2.7360 -4.9421 6.9047 21 1 2.9068 -5.7269 7.6267 22 6 3.6131 -3.8542 6.8332 23 7 3.2506 -2.7615 6.2117 24 14 5.3013 -3.9619 7.6254 25 1 5.4662 -5.2942 8.2601 26 1 6.3476 -3.7752 6.5883 27 1 5.4326 -2.9018 8.6571 28 6 1.6588 -4.3549 4.7898 29 1 -0.3633 0.5056 0.8947 30 1 -0.3634 0.5219 -0.8852 31 1 -0.3633 -1.0277 -0.0093 32 1 1.7994 -1.7924 -1.1730 33 1 1.5871 -0.3073 -2.1363 34 1 3.9610 -1.2078 -2.1023 35 1 3.8000 0.4747 -1.5503 36 1 5.1272 -1.1263 -0.0405 37 1 0.9669 -2.4424 0.5941 38 1 0.1469 -4.1659 1.9433 39 1 -1.4066 -5.2201 3.6568 40 1 -1.4695 -6.3809 5.8234 41 1 0.4515 -6.2621 7.3478 42 1 3.8585 -2.0072 6.1625 43 1 2.5324 -3.7913 4.4975 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334726277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:13 Heat of formation + Delta-G solvation = -65.809131 kcal Electronic energy + Delta-G solvation = -27185.470754 eV Core-core repulsion = 23422.156992 eV Total energy + Delta-G solvation = -3763.313762 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.02660 -40.76733 -38.99276 -38.03496 -36.12741 -35.79781 -34.93027 -33.55520 -31.41619 -30.48491 -29.61925 -28.27228 -27.14664 -24.61795 -23.55476 -22.70018 -22.44650 -21.57188 -20.02125 -19.79311 -19.07305 -18.12383 -17.73303 -17.45378 -16.92229 -16.47305 -16.40178 -15.99384 -15.81510 -15.56181 -15.19418 -14.75987 -14.67438 -14.50159 -14.14835 -13.98577 -13.84230 -13.44346 -13.33526 -12.99400 -12.83123 -12.75812 -12.61872 -12.22927 -12.20051 -11.88377 -11.80634 -11.63150 -11.51536 -11.25195 -11.14243 -10.81683 -10.70862 -10.05298 -10.00196 -9.25636 -8.71335 -8.39840 -6.28078 0.93479 1.12511 1.29643 1.31104 1.47893 1.48161 2.01889 2.17536 2.20331 2.45818 2.85433 3.37513 3.47312 3.63570 3.74235 3.81950 3.88238 4.42443 4.45153 4.53179 4.53811 4.57448 4.75250 4.84791 4.93559 4.97822 5.01524 5.12469 5.13896 5.23594 5.30360 5.30848 5.39389 5.43214 5.46068 5.79312 5.85621 5.92134 6.05168 6.19186 6.25815 6.33737 6.48942 6.74476 7.01213 7.12323 7.17301 7.24540 7.78389 8.39613 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013658 B = 0.004603 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.556997 B = 6081.604287 C = 7690.978282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 H 0.105 0.895 4 C -0.129 4.129 5 C 0.101 3.899 6 N -0.711 5.711 7 C 0.491 3.509 8 O -0.593 6.593 9 C 0.165 3.835 10 H 0.079 0.921 11 N -0.710 5.710 12 C 0.676 3.324 13 O -0.570 6.570 14 N -0.671 5.671 15 C 0.161 3.839 16 C -0.256 4.256 17 C -0.077 4.077 18 C -0.259 4.259 19 C 0.085 3.915 20 C -0.505 4.505 21 H 0.077 0.923 22 C 0.024 3.976 23 N -0.788 5.788 24 Si 0.973 3.027 25 H -0.247 1.247 26 H -0.278 1.278 27 H -0.265 1.265 28 C -0.191 4.191 29 H 0.041 0.959 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.128 0.872 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.398 0.602 37 H 0.413 0.587 38 H 0.414 0.586 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.097 0.903 42 H 0.275 0.725 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.391 6.571 -23.600 24.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 H 0.123 0.877 4 C -0.167 4.167 5 C -0.021 4.021 6 N -0.363 5.363 7 C 0.275 3.725 8 O -0.471 6.471 9 C 0.055 3.945 10 H 0.097 0.903 11 N -0.372 5.372 12 C 0.376 3.624 13 O -0.443 6.443 14 N -0.321 5.321 15 C 0.067 3.933 16 C -0.277 4.277 17 C -0.096 4.096 18 C -0.279 4.279 19 C 0.083 3.917 20 C -0.534 4.534 21 H 0.095 0.905 22 C -0.193 4.193 23 N -0.412 5.412 24 Si 0.794 3.206 25 H -0.170 1.170 26 H -0.204 1.204 27 H -0.190 1.190 28 C -0.213 4.213 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.146 0.854 34 H 0.121 0.879 35 H 0.107 0.893 36 H 0.233 0.767 37 H 0.252 0.748 38 H 0.251 0.749 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.116 0.884 42 H 0.086 0.914 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.800 7.271 -22.297 23.758 hybrid contribution 1.125 -0.306 0.259 1.194 sum -2.675 6.965 -22.038 23.267 Atomic orbital electron populations 1.21765 0.92442 1.02813 1.02808 1.21647 0.98090 1.00039 0.91300 0.87733 1.22061 0.94155 1.01607 0.98841 1.21803 0.94120 1.02722 0.83472 1.45632 1.13414 1.69266 1.08010 1.21187 0.91714 0.76521 0.83054 1.90881 1.69142 1.49059 1.38016 1.20720 0.86230 0.85504 1.02021 0.90332 1.44614 1.61082 1.23811 1.07646 1.16448 0.79905 0.81516 0.84543 1.91205 1.51091 1.64234 1.37772 1.42254 1.57420 1.20845 1.11556 1.17518 0.94391 0.95426 0.85959 1.20434 0.97595 1.09617 1.00103 1.20718 0.97324 0.98155 0.93355 1.21174 0.95444 1.10388 1.00895 1.17881 0.92506 0.90011 0.91348 1.19783 1.09202 1.06437 1.17994 0.90497 1.26838 1.03287 0.94016 0.95134 1.70046 1.36273 1.02543 1.32303 0.85310 0.77069 0.79906 0.78332 1.17035 1.20399 1.18956 1.21274 0.98445 1.06112 0.95433 0.93943 0.89072 0.92059 0.91029 0.85362 0.87880 0.89323 0.76728 0.74831 0.74883 0.85131 0.85039 0.88449 0.91430 0.87911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.91 71.98 0.64 -1.01 16 2 C -0.09 -1.25 2.58 -10.65 -0.03 -1.28 16 3 H 0.10 1.22 8.13 -2.39 -0.02 1.20 16 4 C -0.13 -0.92 5.28 30.68 0.16 -0.76 16 5 C 0.10 0.87 7.17 86.49 0.62 1.49 16 6 N -0.71 -14.71 5.45 -467.31 -2.55 -17.25 16 7 C 0.49 16.05 7.24 87.71 0.63 16.69 16 8 O -0.59 -28.70 17.35 -3.02 -0.05 -28.75 16 9 C 0.16 4.58 2.27 44.10 0.10 4.69 16 10 H 0.08 2.84 7.58 -2.38 -0.02 2.82 16 11 N -0.71 -20.30 4.21 -462.10 -1.94 -22.24 16 12 C 0.68 28.75 8.24 179.05 1.48 30.22 16 13 O -0.57 -32.18 13.34 -3.98 -0.05 -32.23 16 14 N -0.67 -26.37 5.34 -317.33 -1.70 -28.07 16 15 C 0.16 7.97 6.25 38.10 0.24 8.21 16 16 C -0.26 -11.15 9.97 22.58 0.23 -10.93 16 17 C -0.08 -3.46 10.02 22.20 0.22 -3.23 16 18 C -0.26 -13.69 9.79 22.75 0.22 -13.47 16 19 C 0.09 5.17 5.57 -21.30 -0.12 5.05 16 20 C -0.50 -30.83 9.05 23.46 0.21 -30.62 16 21 H 0.08 4.46 7.90 -2.91 -0.02 4.44 16 22 C 0.02 1.44 5.15 85.25 0.44 1.88 16 23 N -0.79 -50.44 10.95 21.82 0.24 -50.20 16 24 Si 0.97 45.47 29.59 68.60 2.03 47.50 16 25 H -0.25 -10.80 7.11 99.48 0.71 -10.09 16 26 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 27 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 28 C -0.19 -11.46 7.28 22.85 0.17 -11.29 16 29 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.70 6.79 -2.38 -0.02 0.68 16 32 H 0.07 0.57 6.96 -2.39 -0.02 0.56 16 33 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.40 8.17 8.80 -92.71 -0.82 7.36 16 37 H 0.41 7.86 6.58 -92.71 -0.61 7.25 16 38 H 0.41 11.59 8.84 -92.71 -0.82 10.77 16 39 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 40 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 41 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 42 H 0.28 17.03 8.30 -92.71 -0.77 16.27 16 43 H 0.10 6.94 4.63 -2.91 -0.01 6.93 16 Total: -1.00 -94.73 351.70 0.02 -94.70 By element: Atomic # 1 Polarization: 42.07 SS G_CDS: -1.17 Total: 40.90 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 5.21 Total: -4.36 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -5.95 Total: -117.77 kcal Atomic # 8 Polarization: -60.88 SS G_CDS: -0.11 Total: -60.98 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -94.73 0.02 -94.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334726277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.894 kcal (2) G-P(sol) polarization free energy of solvation -94.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds