Wall clock time and date at job start Tue Mar 31 2020 11:10:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 C 1.53004 * 109.47484 * 2 1
4 4 N 1.46493 * 109.47233 * 179.97438 * 3 2 1
5 5 C 1.36937 * 120.00345 * 275.33995 * 4 3 2
6 6 H 1.07996 * 120.00069 * 37.65726 * 5 4 3
7 7 C 1.38810 * 119.99851 * 217.65837 * 5 4 3
8 8 N 1.31617 * 120.00375 * 21.21160 * 7 5 4
9 9 Si 1.86805 * 119.99831 * 201.21255 * 7 5 4
10 10 H 1.48503 * 109.46908 * 59.99967 * 9 7 5
11 11 H 1.48500 * 109.47267 * 179.97438 * 9 7 5
12 12 H 1.48495 * 109.47038 * 300.00214 * 9 7 5
13 13 C 1.46501 * 119.99988 * 95.33856 * 4 3 2
14 14 C 1.50702 * 109.47452 * 270.00433 * 13 4 3
15 15 N 1.30343 * 126.18723 * 89.95180 * 14 13 4
16 16 N 1.28666 * 109.53781 * 179.76743 * 15 14 13
17 17 C 1.31273 * 109.25054 * 0.44689 * 16 15 14
18 18 C 1.47773 * 126.38495 * 179.82478 * 17 16 15
19 19 C 1.39619 * 120.08836 * 359.69308 * 18 17 16
20 20 C 1.37821 * 119.91466 * 179.97438 * 19 18 17
21 21 C 1.38890 * 120.08615 * 359.97438 * 20 19 18
22 22 O 1.35831 * 119.91168 * 180.02562 * 21 20 19
23 23 C 1.42904 * 116.99991 * 180.02562 * 22 21 20
24 24 C 1.38892 * 120.17253 * 0.02562 * 21 20 19
25 25 C 1.37820 * 120.09166 * 359.97438 * 24 21 20
26 26 O 1.34468 * 126.17822 * 269.99841 * 14 13 4
27 27 H 1.09000 * 109.47416 * 180.02562 * 1 2 3
28 28 H 1.09002 * 109.47426 * 300.00173 * 1 2 3
29 29 H 1.08998 * 109.47104 * 60.00024 * 1 2 3
30 30 H 1.08996 * 109.47331 * 239.99416 * 2 1 3
31 31 H 1.09005 * 109.46752 * 119.99913 * 2 1 3
32 32 H 1.09002 * 109.46931 * 59.99524 * 3 2 1
33 33 H 1.08998 * 109.46930 * 300.00082 * 3 2 1
34 34 H 0.96998 * 120.00102 * 180.02562 * 8 7 5
35 35 H 1.08995 * 109.47786 * 149.99406 * 13 4 3
36 36 H 1.09009 * 109.47120 * 30.00046 * 13 4 3
37 37 H 1.08004 * 120.04165 * 359.97438 * 19 18 17
38 38 H 1.07997 * 119.95932 * 179.72173 * 20 19 18
39 39 H 1.09002 * 109.47058 * 59.99324 * 23 22 21
40 40 H 1.08995 * 109.47317 * 179.97438 * 23 22 21
41 41 H 1.09000 * 109.46667 * 299.99780 * 23 22 21
42 42 H 1.07999 * 119.95507 * 179.97438 * 24 21 20
43 43 H 1.07998 * 120.04685 * 180.02562 * 25 24 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5049 1.4424 0.0006
5 6 4.1892 1.3322 1.1816
6 1 3.8177 0.6855 1.9627
7 6 5.3604 2.0518 1.3750
8 7 5.6019 3.1231 0.6496
9 14 6.5937 1.4996 2.6647
10 1 7.0641 0.1280 2.3446
11 1 7.7512 2.4299 2.6732
12 1 5.9466 1.5016 4.0013
13 6 4.2380 1.5603 -1.2623
14 6 4.4893 0.1860 -1.8275
15 7 3.7064 -0.4671 -2.6395
16 7 4.2336 -1.6063 -2.9222
17 6 5.3764 -1.7238 -2.2872
18 6 6.2925 -2.8822 -2.3381
19 6 5.9687 -3.9970 -3.1139
20 6 6.8260 -5.0752 -3.1592
21 6 8.0109 -5.0536 -2.4350
22 8 8.8534 -6.1180 -2.4827
23 6 10.0544 -6.0297 -1.7133
24 6 8.3365 -3.9465 -1.6621
25 6 7.4846 -2.8643 -1.6115
26 8 5.5614 -0.5883 -1.5844
27 1 -0.3634 -1.0276 0.0005
28 1 -0.3634 0.5139 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 1.8933 -0.5139 -0.8899
31 1 1.8932 -0.5139 0.8901
32 1 1.6766 1.9564 0.8900
33 1 1.6767 1.9563 -0.8900
34 1 6.4205 3.6258 0.7844
35 1 5.1903 2.0598 -1.0846
36 1 3.6492 2.1425 -1.9713
37 1 5.0477 -4.0144 -3.6777
38 1 6.5741 -5.9398 -3.7555
39 1 9.8029 -5.9022 -0.6604
40 1 10.6349 -6.9436 -1.8397
41 1 10.6413 -5.1762 -2.0526
42 1 9.2586 -3.9336 -1.1000
43 1 7.7387 -2.0037 -1.0106
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000344717236.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:10:57
Heat of formation + Delta-G solvation = 39.737239 kcal
Electronic energy + Delta-G solvation = -26241.938158 eV
Core-core repulsion = 22483.201230 eV
Total energy + Delta-G solvation = -3758.736928 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 317.153 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-43.29058 -40.26409 -37.66621 -36.43320 -35.34680 -33.10693 -32.18576 -31.34070
-30.96229 -29.34014 -27.69251 -26.42547 -25.69355 -23.57197 -23.18394 -22.34937
-21.23357 -21.12115 -20.25324 -18.42809 -17.32960 -16.95920 -16.36650 -16.30574
-15.98734 -15.66426 -14.97080 -14.51233 -14.38710 -14.08806 -13.97081 -13.74290
-13.51151 -13.29774 -12.95598 -12.69027 -12.51682 -12.17132 -11.75561 -11.65846
-11.61345 -11.48166 -11.22352 -11.10737 -10.99929 -10.88405 -10.81119 -10.68022
-10.46882 -10.21854 -10.14922 -9.86347 -9.32131 -9.19744 -8.71907 -7.90726
-6.92602 -6.09250 -3.66369 0.76092 1.19589 2.17935 2.92576 3.01912
3.07709 3.25065 3.29954 3.33303 3.72973 4.27874 4.37936 4.59276
4.68680 4.84093 4.87061 5.03736 5.11112 5.19250 5.22222 5.29045
5.35720 5.48691 5.69915 5.71089 5.77133 5.85389 5.97062 6.04168
6.08558 6.23712 6.25374 6.40744 6.43729 6.47178 6.48312 6.49342
6.60569 6.64174 6.92396 7.10528 7.11377 7.15444 7.61573 8.23074
8.86528 9.02945 9.48882 10.04993 10.93142
Molecular weight = 317.15amu
Principal moments of inertia in cm(-1)
A = 0.012097 B = 0.004000 C = 0.003297
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2314.114259 B = 6998.592188 C = 8491.024122
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.148 4.148
3 C 0.147 3.853
4 N -0.561 5.561
5 C -0.273 4.273
6 H 0.065 0.935
7 C 0.022 3.978
8 N -0.879 5.879
9 Si 0.900 3.100
10 H -0.280 1.280
11 H -0.286 1.286
12 H -0.277 1.277
13 C 0.218 3.782
14 C 0.192 3.808
15 N -0.317 5.317
16 N -0.281 5.281
17 C 0.165 3.835
18 C -0.041 4.041
19 C -0.036 4.036
20 C -0.153 4.153
21 C 0.138 3.862
22 O -0.316 6.316
23 C 0.025 3.975
24 C -0.208 4.208
25 C -0.047 4.047
26 O -0.214 6.214
27 H 0.043 0.957
28 H 0.048 0.952
29 H 0.049 0.951
30 H 0.061 0.939
31 H 0.052 0.948
32 H 0.053 0.947
33 H 0.043 0.957
34 H 0.262 0.738
35 H 0.123 0.877
36 H 0.083 0.917
37 H 0.145 0.855
38 H 0.139 0.861
39 H 0.057 0.943
40 H 0.100 0.900
41 H 0.057 0.943
42 H 0.135 0.865
43 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.505 -12.712 -5.018 14.734
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.188 4.188
3 C 0.022 3.978
4 N -0.279 5.279
5 C -0.402 4.402
6 H 0.083 0.917
7 C -0.180 4.180
8 N -0.520 5.520
9 Si 0.729 3.271
10 H -0.206 1.206
11 H -0.212 1.212
12 H -0.203 1.203
13 C 0.087 3.913
14 C -0.020 4.020
15 N -0.165 5.165
16 N -0.130 5.130
17 C -0.044 4.044
18 C -0.043 4.043
19 C -0.055 4.055
20 C -0.171 4.171
21 C 0.092 3.908
22 O -0.229 6.229
23 C -0.070 4.070
24 C -0.227 4.227
25 C -0.067 4.067
26 O -0.092 6.092
27 H 0.062 0.938
28 H 0.067 0.933
29 H 0.068 0.932
30 H 0.079 0.921
31 H 0.071 0.929
32 H 0.072 0.928
33 H 0.062 0.938
34 H 0.072 0.928
35 H 0.140 0.860
36 H 0.101 0.899
37 H 0.163 0.837
38 H 0.157 0.843
39 H 0.076 0.924
40 H 0.118 0.882
41 H 0.076 0.924
42 H 0.152 0.848
43 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges 4.581 -12.943 -5.821 14.912
hybrid contribution 1.860 -0.007 1.673 2.502
sum 6.441 -12.950 -4.147 15.046
Atomic orbital electron populations
1.21675 0.96952 1.00485 1.01029 1.22115 0.94307 1.00589 1.01812
1.21056 0.83598 0.93527 0.99658 1.43824 1.00227 1.82547 1.01259
1.19042 1.06445 1.21364 0.93352 0.91689 1.25225 1.00443 0.94164
0.98135 1.69926 1.25906 1.14187 1.41951 0.86404 0.80799 0.78446
0.81481 1.20581 1.21188 1.20277 1.20050 1.02324 0.81843 0.87085
1.31304 0.79767 0.99019 0.91938 1.74298 1.25635 1.00324 1.16268
1.74489 1.05470 1.12601 1.20448 1.25153 0.96111 0.88669 0.94439
1.17147 0.93586 0.90577 1.02960 1.20971 0.98937 0.90192 0.95390
1.20304 0.93114 1.00324 1.03387 1.19210 0.90484 0.86441 0.94639
1.86053 1.31610 1.38397 1.66819 1.23101 0.84847 1.03612 0.95440
1.21126 1.02491 0.94499 1.04567 1.21122 0.91737 0.98059 0.95771
1.84978 1.43269 1.24496 1.56484 0.93818 0.93288 0.93159 0.92069
0.92911 0.92824 0.93824 0.92806 0.85980 0.89945 0.83687 0.84333
0.92391 0.88166 0.92409 0.84765 0.84582
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.25 9.91 37.15 0.37 -1.89 16
2 C -0.15 -2.89 6.23 -26.73 -0.17 -3.05 16
3 C 0.15 3.06 5.72 -4.04 -0.02 3.03 16
4 N -0.56 -13.42 2.42 -174.61 -0.42 -13.84 16
5 C -0.27 -7.11 9.45 -15.06 -0.14 -7.26 16
6 H 0.07 1.72 7.91 -52.49 -0.42 1.30 16
7 C 0.02 0.58 4.96 -17.43 -0.09 0.49 16
8 N -0.88 -23.40 11.46 55.49 0.64 -22.77 16
9 Si 0.90 20.55 29.60 -169.99 -5.03 15.52 16
10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16
12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
13 C 0.22 4.97 5.95 -5.19 -0.03 4.94 16
14 C 0.19 4.32 7.91 -12.91 -0.10 4.21 16
15 N -0.32 -7.03 11.28 32.58 0.37 -6.66 16
16 N -0.28 -5.91 11.91 32.06 0.38 -5.53 16
17 C 0.17 3.29 7.99 -13.89 -0.11 3.18 16
18 C -0.04 -0.66 5.87 -104.97 -0.62 -1.27 16
19 C -0.04 -0.48 9.69 -39.22 -0.38 -0.86 16
20 C -0.15 -1.79 9.97 -39.49 -0.39 -2.19 16
21 C 0.14 1.63 6.69 -39.10 -0.26 1.37 16
22 O -0.32 -3.32 10.49 -19.21 -0.20 -3.52 16
23 C 0.03 0.17 9.81 101.05 0.99 1.16 16
24 C -0.21 -2.48 9.02 -39.49 -0.36 -2.84 16
25 C -0.05 -0.68 9.72 -39.22 -0.38 -1.06 16
26 O -0.21 -4.77 10.67 3.85 0.04 -4.73 16
27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16
28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
30 H 0.06 1.30 7.02 -51.93 -0.36 0.93 16
31 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16
32 H 0.05 1.12 8.08 -51.93 -0.42 0.70 16
33 H 0.04 0.85 7.83 -51.93 -0.41 0.44 16
34 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16
35 H 0.12 3.03 5.51 -51.93 -0.29 2.75 16
36 H 0.08 1.73 7.86 -51.92 -0.41 1.32 16
37 H 0.15 1.86 7.86 -52.48 -0.41 1.45 16
38 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16
39 H 0.06 0.36 7.65 -51.93 -0.40 -0.03 16
40 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16
41 H 0.06 0.35 7.65 -51.93 -0.40 -0.05 16
42 H 0.13 1.26 6.28 -52.49 -0.33 0.93 16
43 H 0.14 2.01 7.93 -52.49 -0.42 1.59 16
LS Contribution 366.72 15.07 5.53 5.53
Total: -1.00 -29.54 366.72 -6.32 -35.86
By element:
Atomic # 1 Polarization: 8.09 SS G_CDS: -5.93 Total: 2.16 kcal
Atomic # 6 Polarization: -0.33 SS G_CDS: -1.69 Total: -2.02 kcal
Atomic # 7 Polarization: -49.76 SS G_CDS: 0.96 Total: -48.80 kcal
Atomic # 8 Polarization: -8.09 SS G_CDS: -0.16 Total: -8.25 kcal
Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -29.54 -6.32 -35.86 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000344717236.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.600 kcal
(2) G-P(sol) polarization free energy of solvation -29.542 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.058 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.863 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.737 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds