Wall clock time and date at job start Tue Mar 31 2020 11:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47484 * 2 1 4 4 N 1.46493 * 109.47233 * 179.97438 * 3 2 1 5 5 C 1.36937 * 120.00345 * 275.33995 * 4 3 2 6 6 H 1.07996 * 120.00069 * 37.65726 * 5 4 3 7 7 C 1.38810 * 119.99851 * 217.65837 * 5 4 3 8 8 N 1.31617 * 120.00375 * 21.21160 * 7 5 4 9 9 Si 1.86805 * 119.99831 * 201.21255 * 7 5 4 10 10 H 1.48503 * 109.46908 * 59.99967 * 9 7 5 11 11 H 1.48500 * 109.47267 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47038 * 300.00214 * 9 7 5 13 13 C 1.46501 * 119.99988 * 95.33856 * 4 3 2 14 14 C 1.50702 * 109.47452 * 270.00433 * 13 4 3 15 15 N 1.30343 * 126.18723 * 89.95180 * 14 13 4 16 16 N 1.28666 * 109.53781 * 179.76743 * 15 14 13 17 17 C 1.31273 * 109.25054 * 0.44689 * 16 15 14 18 18 C 1.47773 * 126.38495 * 179.82478 * 17 16 15 19 19 C 1.39619 * 120.08836 * 359.69308 * 18 17 16 20 20 C 1.37821 * 119.91466 * 179.97438 * 19 18 17 21 21 C 1.38890 * 120.08615 * 359.97438 * 20 19 18 22 22 O 1.35831 * 119.91168 * 180.02562 * 21 20 19 23 23 C 1.42904 * 116.99991 * 180.02562 * 22 21 20 24 24 C 1.38892 * 120.17253 * 0.02562 * 21 20 19 25 25 C 1.37820 * 120.09166 * 359.97438 * 24 21 20 26 26 O 1.34468 * 126.17822 * 269.99841 * 14 13 4 27 27 H 1.09000 * 109.47416 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47426 * 300.00173 * 1 2 3 29 29 H 1.08998 * 109.47104 * 60.00024 * 1 2 3 30 30 H 1.08996 * 109.47331 * 239.99416 * 2 1 3 31 31 H 1.09005 * 109.46752 * 119.99913 * 2 1 3 32 32 H 1.09002 * 109.46931 * 59.99524 * 3 2 1 33 33 H 1.08998 * 109.46930 * 300.00082 * 3 2 1 34 34 H 0.96998 * 120.00102 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.47786 * 149.99406 * 13 4 3 36 36 H 1.09009 * 109.47120 * 30.00046 * 13 4 3 37 37 H 1.08004 * 120.04165 * 359.97438 * 19 18 17 38 38 H 1.07997 * 119.95932 * 179.72173 * 20 19 18 39 39 H 1.09002 * 109.47058 * 59.99324 * 23 22 21 40 40 H 1.08995 * 109.47317 * 179.97438 * 23 22 21 41 41 H 1.09000 * 109.46667 * 299.99780 * 23 22 21 42 42 H 1.07999 * 119.95507 * 179.97438 * 24 21 20 43 43 H 1.07998 * 120.04685 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4424 0.0006 5 6 4.1892 1.3322 1.1816 6 1 3.8177 0.6855 1.9627 7 6 5.3604 2.0518 1.3750 8 7 5.6019 3.1231 0.6496 9 14 6.5937 1.4996 2.6647 10 1 7.0641 0.1280 2.3446 11 1 7.7512 2.4299 2.6732 12 1 5.9466 1.5016 4.0013 13 6 4.2380 1.5603 -1.2623 14 6 4.4893 0.1860 -1.8275 15 7 3.7064 -0.4671 -2.6395 16 7 4.2336 -1.6063 -2.9222 17 6 5.3764 -1.7238 -2.2872 18 6 6.2925 -2.8822 -2.3381 19 6 5.9687 -3.9970 -3.1139 20 6 6.8260 -5.0752 -3.1592 21 6 8.0109 -5.0536 -2.4350 22 8 8.8534 -6.1180 -2.4827 23 6 10.0544 -6.0297 -1.7133 24 6 8.3365 -3.9465 -1.6621 25 6 7.4846 -2.8643 -1.6115 26 8 5.5614 -0.5883 -1.5844 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 6.4205 3.6258 0.7844 35 1 5.1903 2.0598 -1.0846 36 1 3.6492 2.1425 -1.9713 37 1 5.0477 -4.0144 -3.6777 38 1 6.5741 -5.9398 -3.7555 39 1 9.8029 -5.9022 -0.6604 40 1 10.6349 -6.9436 -1.8397 41 1 10.6413 -5.1762 -2.0526 42 1 9.2586 -3.9336 -1.1000 43 1 7.7387 -2.0037 -1.0106 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344717236.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:57 Heat of formation + Delta-G solvation = 39.737239 kcal Electronic energy + Delta-G solvation = -26241.938158 eV Core-core repulsion = 22483.201230 eV Total energy + Delta-G solvation = -3758.736928 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.29058 -40.26409 -37.66621 -36.43320 -35.34680 -33.10693 -32.18576 -31.34070 -30.96229 -29.34014 -27.69251 -26.42547 -25.69355 -23.57197 -23.18394 -22.34937 -21.23357 -21.12115 -20.25324 -18.42809 -17.32960 -16.95920 -16.36650 -16.30574 -15.98734 -15.66426 -14.97080 -14.51233 -14.38710 -14.08806 -13.97081 -13.74290 -13.51151 -13.29774 -12.95598 -12.69027 -12.51682 -12.17132 -11.75561 -11.65846 -11.61345 -11.48166 -11.22352 -11.10737 -10.99929 -10.88405 -10.81119 -10.68022 -10.46882 -10.21854 -10.14922 -9.86347 -9.32131 -9.19744 -8.71907 -7.90726 -6.92602 -6.09250 -3.66369 0.76092 1.19589 2.17935 2.92576 3.01912 3.07709 3.25065 3.29954 3.33303 3.72973 4.27874 4.37936 4.59276 4.68680 4.84093 4.87061 5.03736 5.11112 5.19250 5.22222 5.29045 5.35720 5.48691 5.69915 5.71089 5.77133 5.85389 5.97062 6.04168 6.08558 6.23712 6.25374 6.40744 6.43729 6.47178 6.48312 6.49342 6.60569 6.64174 6.92396 7.10528 7.11377 7.15444 7.61573 8.23074 8.86528 9.02945 9.48882 10.04993 10.93142 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012097 B = 0.004000 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.114259 B = 6998.592188 C = 8491.024122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.148 4.148 3 C 0.147 3.853 4 N -0.561 5.561 5 C -0.273 4.273 6 H 0.065 0.935 7 C 0.022 3.978 8 N -0.879 5.879 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.218 3.782 14 C 0.192 3.808 15 N -0.317 5.317 16 N -0.281 5.281 17 C 0.165 3.835 18 C -0.041 4.041 19 C -0.036 4.036 20 C -0.153 4.153 21 C 0.138 3.862 22 O -0.316 6.316 23 C 0.025 3.975 24 C -0.208 4.208 25 C -0.047 4.047 26 O -0.214 6.214 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.262 0.738 35 H 0.123 0.877 36 H 0.083 0.917 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.057 0.943 40 H 0.100 0.900 41 H 0.057 0.943 42 H 0.135 0.865 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.505 -12.712 -5.018 14.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.188 4.188 3 C 0.022 3.978 4 N -0.279 5.279 5 C -0.402 4.402 6 H 0.083 0.917 7 C -0.180 4.180 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.087 3.913 14 C -0.020 4.020 15 N -0.165 5.165 16 N -0.130 5.130 17 C -0.044 4.044 18 C -0.043 4.043 19 C -0.055 4.055 20 C -0.171 4.171 21 C 0.092 3.908 22 O -0.229 6.229 23 C -0.070 4.070 24 C -0.227 4.227 25 C -0.067 4.067 26 O -0.092 6.092 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.140 0.860 36 H 0.101 0.899 37 H 0.163 0.837 38 H 0.157 0.843 39 H 0.076 0.924 40 H 0.118 0.882 41 H 0.076 0.924 42 H 0.152 0.848 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.581 -12.943 -5.821 14.912 hybrid contribution 1.860 -0.007 1.673 2.502 sum 6.441 -12.950 -4.147 15.046 Atomic orbital electron populations 1.21675 0.96952 1.00485 1.01029 1.22115 0.94307 1.00589 1.01812 1.21056 0.83598 0.93527 0.99658 1.43824 1.00227 1.82547 1.01259 1.19042 1.06445 1.21364 0.93352 0.91689 1.25225 1.00443 0.94164 0.98135 1.69926 1.25906 1.14187 1.41951 0.86404 0.80799 0.78446 0.81481 1.20581 1.21188 1.20277 1.20050 1.02324 0.81843 0.87085 1.31304 0.79767 0.99019 0.91938 1.74298 1.25635 1.00324 1.16268 1.74489 1.05470 1.12601 1.20448 1.25153 0.96111 0.88669 0.94439 1.17147 0.93586 0.90577 1.02960 1.20971 0.98937 0.90192 0.95390 1.20304 0.93114 1.00324 1.03387 1.19210 0.90484 0.86441 0.94639 1.86053 1.31610 1.38397 1.66819 1.23101 0.84847 1.03612 0.95440 1.21126 1.02491 0.94499 1.04567 1.21122 0.91737 0.98059 0.95771 1.84978 1.43269 1.24496 1.56484 0.93818 0.93288 0.93159 0.92069 0.92911 0.92824 0.93824 0.92806 0.85980 0.89945 0.83687 0.84333 0.92391 0.88166 0.92409 0.84765 0.84582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.91 37.15 0.37 -1.89 16 2 C -0.15 -2.89 6.23 -26.73 -0.17 -3.05 16 3 C 0.15 3.06 5.72 -4.04 -0.02 3.03 16 4 N -0.56 -13.42 2.42 -174.61 -0.42 -13.84 16 5 C -0.27 -7.11 9.45 -15.06 -0.14 -7.26 16 6 H 0.07 1.72 7.91 -52.49 -0.42 1.30 16 7 C 0.02 0.58 4.96 -17.43 -0.09 0.49 16 8 N -0.88 -23.40 11.46 55.49 0.64 -22.77 16 9 Si 0.90 20.55 29.60 -169.99 -5.03 15.52 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 C 0.22 4.97 5.95 -5.19 -0.03 4.94 16 14 C 0.19 4.32 7.91 -12.91 -0.10 4.21 16 15 N -0.32 -7.03 11.28 32.58 0.37 -6.66 16 16 N -0.28 -5.91 11.91 32.06 0.38 -5.53 16 17 C 0.17 3.29 7.99 -13.89 -0.11 3.18 16 18 C -0.04 -0.66 5.87 -104.97 -0.62 -1.27 16 19 C -0.04 -0.48 9.69 -39.22 -0.38 -0.86 16 20 C -0.15 -1.79 9.97 -39.49 -0.39 -2.19 16 21 C 0.14 1.63 6.69 -39.10 -0.26 1.37 16 22 O -0.32 -3.32 10.49 -19.21 -0.20 -3.52 16 23 C 0.03 0.17 9.81 101.05 0.99 1.16 16 24 C -0.21 -2.48 9.02 -39.49 -0.36 -2.84 16 25 C -0.05 -0.68 9.72 -39.22 -0.38 -1.06 16 26 O -0.21 -4.77 10.67 3.85 0.04 -4.73 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.30 7.02 -51.93 -0.36 0.93 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.05 1.12 8.08 -51.93 -0.42 0.70 16 33 H 0.04 0.85 7.83 -51.93 -0.41 0.44 16 34 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 35 H 0.12 3.03 5.51 -51.93 -0.29 2.75 16 36 H 0.08 1.73 7.86 -51.92 -0.41 1.32 16 37 H 0.15 1.86 7.86 -52.48 -0.41 1.45 16 38 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.06 0.36 7.65 -51.93 -0.40 -0.03 16 40 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.35 7.65 -51.93 -0.40 -0.05 16 42 H 0.13 1.26 6.28 -52.49 -0.33 0.93 16 43 H 0.14 2.01 7.93 -52.49 -0.42 1.59 16 LS Contribution 366.72 15.07 5.53 5.53 Total: -1.00 -29.54 366.72 -6.32 -35.86 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -5.93 Total: 2.16 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -1.69 Total: -2.02 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.96 Total: -48.80 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -0.16 Total: -8.25 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.54 -6.32 -35.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344717236.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.600 kcal (2) G-P(sol) polarization free energy of solvation -29.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds