Wall clock time and date at job start Tue Mar 31 2020 11:10:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 C 1.53004 * 109.47484 * 2 1
4 4 N 1.46493 * 109.47233 * 179.97438 * 3 2 1
5 5 C 1.36937 * 120.00345 * 275.33995 * 4 3 2
6 6 H 1.07996 * 120.00069 * 37.65726 * 5 4 3
7 7 C 1.38810 * 119.99851 * 217.65837 * 5 4 3
8 8 N 1.31617 * 120.00375 * 21.21160 * 7 5 4
9 9 Si 1.86805 * 119.99831 * 201.21255 * 7 5 4
10 10 H 1.48503 * 109.46908 * 59.99967 * 9 7 5
11 11 H 1.48500 * 109.47267 * 179.97438 * 9 7 5
12 12 H 1.48495 * 109.47038 * 300.00214 * 9 7 5
13 13 C 1.46501 * 119.99988 * 95.33856 * 4 3 2
14 14 C 1.50702 * 109.47452 * 270.00433 * 13 4 3
15 15 N 1.30343 * 126.18723 * 89.95180 * 14 13 4
16 16 N 1.28666 * 109.53781 * 179.76743 * 15 14 13
17 17 C 1.31273 * 109.25054 * 0.44689 * 16 15 14
18 18 C 1.47773 * 126.38495 * 179.82478 * 17 16 15
19 19 C 1.39619 * 120.08836 * 359.69308 * 18 17 16
20 20 C 1.37821 * 119.91466 * 179.97438 * 19 18 17
21 21 C 1.38890 * 120.08615 * 359.97438 * 20 19 18
22 22 O 1.35831 * 119.91168 * 180.02562 * 21 20 19
23 23 C 1.42904 * 116.99991 * 180.02562 * 22 21 20
24 24 C 1.38892 * 120.17253 * 0.02562 * 21 20 19
25 25 C 1.37820 * 120.09166 * 359.97438 * 24 21 20
26 26 O 1.34468 * 126.17822 * 269.99841 * 14 13 4
27 27 H 1.09000 * 109.47416 * 180.02562 * 1 2 3
28 28 H 1.09002 * 109.47426 * 300.00173 * 1 2 3
29 29 H 1.08998 * 109.47104 * 60.00024 * 1 2 3
30 30 H 1.08996 * 109.47331 * 239.99416 * 2 1 3
31 31 H 1.09005 * 109.46752 * 119.99913 * 2 1 3
32 32 H 1.09002 * 109.46931 * 59.99524 * 3 2 1
33 33 H 1.08998 * 109.46930 * 300.00082 * 3 2 1
34 34 H 0.96998 * 120.00102 * 180.02562 * 8 7 5
35 35 H 1.08995 * 109.47786 * 149.99406 * 13 4 3
36 36 H 1.09009 * 109.47120 * 30.00046 * 13 4 3
37 37 H 1.08004 * 120.04165 * 359.97438 * 19 18 17
38 38 H 1.07997 * 119.95932 * 179.72173 * 20 19 18
39 39 H 1.09002 * 109.47058 * 59.99324 * 23 22 21
40 40 H 1.08995 * 109.47317 * 179.97438 * 23 22 21
41 41 H 1.09000 * 109.46667 * 299.99780 * 23 22 21
42 42 H 1.07999 * 119.95507 * 179.97438 * 24 21 20
43 43 H 1.07998 * 120.04685 * 180.02562 * 25 24 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5049 1.4424 0.0006
5 6 4.1892 1.3322 1.1816
6 1 3.8177 0.6855 1.9627
7 6 5.3604 2.0518 1.3750
8 7 5.6019 3.1231 0.6496
9 14 6.5937 1.4996 2.6647
10 1 7.0641 0.1280 2.3446
11 1 7.7512 2.4299 2.6732
12 1 5.9466 1.5016 4.0013
13 6 4.2380 1.5603 -1.2623
14 6 4.4893 0.1860 -1.8275
15 7 3.7064 -0.4671 -2.6395
16 7 4.2336 -1.6063 -2.9222
17 6 5.3764 -1.7238 -2.2872
18 6 6.2925 -2.8822 -2.3381
19 6 5.9687 -3.9970 -3.1139
20 6 6.8260 -5.0752 -3.1592
21 6 8.0109 -5.0536 -2.4350
22 8 8.8534 -6.1180 -2.4827
23 6 10.0544 -6.0297 -1.7133
24 6 8.3365 -3.9465 -1.6621
25 6 7.4846 -2.8643 -1.6115
26 8 5.5614 -0.5883 -1.5844
27 1 -0.3634 -1.0276 0.0005
28 1 -0.3634 0.5139 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 1.8933 -0.5139 -0.8899
31 1 1.8932 -0.5139 0.8901
32 1 1.6766 1.9564 0.8900
33 1 1.6767 1.9563 -0.8900
34 1 6.4205 3.6258 0.7844
35 1 5.1903 2.0598 -1.0846
36 1 3.6492 2.1425 -1.9713
37 1 5.0477 -4.0144 -3.6777
38 1 6.5741 -5.9398 -3.7555
39 1 9.8029 -5.9022 -0.6604
40 1 10.6349 -6.9436 -1.8397
41 1 10.6413 -5.1762 -2.0526
42 1 9.2586 -3.9336 -1.1000
43 1 7.7387 -2.0037 -1.0106
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000344717236.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:10:57
Heat of formation + Delta-G solvation = 20.414958 kcal
Electronic energy + Delta-G solvation = -26242.776035 eV
Core-core repulsion = 22483.201230 eV
Total energy + Delta-G solvation = -3759.574805 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 317.153 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-44.96010 -41.18576 -38.64767 -38.18257 -37.03723 -34.77791 -33.72759 -32.58659
-32.33513 -30.74409 -28.55684 -27.89209 -27.45369 -24.95614 -24.62684 -23.68748
-22.72696 -22.48190 -21.93848 -19.37951 -19.06434 -18.41082 -18.05590 -17.41579
-17.15457 -16.71961 -16.65545 -16.06573 -15.76930 -15.61000 -15.50586 -14.97646
-14.79302 -14.52202 -14.06666 -13.90039 -13.73683 -13.41987 -13.40013 -13.29970
-12.95225 -12.82948 -12.78974 -12.68088 -12.52203 -12.37586 -12.28801 -12.10907
-11.98536 -11.96674 -11.83088 -11.45361 -10.74361 -10.64701 -10.21560 -9.11988
-8.82497 -8.04089 -5.66119 -0.49188 0.19288 0.69714 1.37111 1.42713
1.45223 1.49064 1.51083 2.22839 2.40896 2.61903 2.88206 3.13551
3.49782 3.54956 3.67350 3.77610 4.00787 4.12031 4.19582 4.32453
4.34927 4.39697 4.41065 4.44503 4.51708 4.57144 4.65513 4.75268
4.75954 4.78632 4.87815 4.91969 5.04842 5.12882 5.15944 5.19861
5.26219 5.32387 5.36141 5.48588 5.54945 5.57844 6.26530 6.29911
6.93957 7.35589 7.58492 8.12780 8.95788
Molecular weight = 317.15amu
Principal moments of inertia in cm(-1)
A = 0.012097 B = 0.004000 C = 0.003297
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2314.114259 B = 6998.592188 C = 8491.024122
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.137 4.137
3 C 0.146 3.854
4 N -0.575 5.575
5 C -0.287 4.287
6 H 0.054 0.946
7 C -0.014 4.014
8 N -0.901 5.901
9 Si 0.952 3.048
10 H -0.283 1.283
11 H -0.282 1.282
12 H -0.272 1.272
13 C 0.226 3.774
14 C 0.177 3.823
15 N -0.319 5.319
16 N -0.303 5.303
17 C 0.183 3.817
18 C -0.080 4.080
19 C -0.030 4.030
20 C -0.149 4.149
21 C 0.151 3.849
22 O -0.321 6.321
23 C 0.012 3.988
24 C -0.203 4.203
25 C -0.053 4.053
26 O -0.232 6.232
27 H 0.055 0.945
28 H 0.061 0.939
29 H 0.061 0.939
30 H 0.041 0.959
31 H 0.032 0.968
32 H 0.050 0.950
33 H 0.057 0.943
34 H 0.262 0.738
35 H 0.102 0.898
36 H 0.096 0.904
37 H 0.148 0.852
38 H 0.166 0.834
39 H 0.065 0.935
40 H 0.125 0.875
41 H 0.068 0.932
42 H 0.162 0.838
43 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.548 -14.968 -5.125 17.122
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.177 4.177
3 C 0.021 3.979
4 N -0.294 5.294
5 C -0.417 4.417
6 H 0.072 0.928
7 C -0.214 4.214
8 N -0.543 5.543
9 Si 0.779 3.221
10 H -0.209 1.209
11 H -0.207 1.207
12 H -0.197 1.197
13 C 0.095 3.905
14 C -0.036 4.036
15 N -0.166 5.166
16 N -0.150 5.150
17 C -0.026 4.026
18 C -0.082 4.082
19 C -0.049 4.049
20 C -0.167 4.167
21 C 0.104 3.896
22 O -0.233 6.233
23 C -0.082 4.082
24 C -0.222 4.222
25 C -0.073 4.073
26 O -0.112 6.112
27 H 0.074 0.926
28 H 0.080 0.920
29 H 0.080 0.920
30 H 0.060 0.940
31 H 0.051 0.949
32 H 0.069 0.931
33 H 0.075 0.925
34 H 0.071 0.929
35 H 0.119 0.881
36 H 0.114 0.886
37 H 0.166 0.834
38 H 0.183 0.817
39 H 0.084 0.916
40 H 0.143 0.857
41 H 0.086 0.914
42 H 0.180 0.820
43 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges 5.607 -15.220 -5.941 17.274
hybrid contribution 1.686 0.470 1.642 2.400
sum 7.293 -14.750 -4.300 17.007
Atomic orbital electron populations
1.21610 0.93773 1.01694 1.02238 1.21962 0.96996 0.99006 0.99766
1.21154 0.82170 0.94509 1.00064 1.43968 1.01376 1.83030 1.01006
1.19124 1.07264 1.21236 0.94088 0.92849 1.25802 1.01537 0.94160
0.99909 1.70008 1.26183 1.14890 1.43200 0.85592 0.79009 0.77753
0.79723 1.20881 1.20696 1.19692 1.19817 1.01445 0.82077 0.87131
1.30993 0.80319 0.99174 0.93122 1.74218 1.25663 1.00748 1.16007
1.74443 1.06351 1.12419 1.21800 1.25961 0.95913 0.88428 0.92286
1.17357 0.94293 0.90476 1.06050 1.21040 0.99418 0.89823 0.94652
1.20564 0.92654 1.00320 1.03203 1.19355 0.90459 0.86482 0.93301
1.86071 1.32505 1.37537 1.67210 1.23461 0.83668 1.05521 0.95505
1.21345 1.02856 0.93504 1.04457 1.21127 0.91761 0.98753 0.95650
1.84952 1.43548 1.25465 1.57192 0.92626 0.92034 0.91980 0.94034
0.94946 0.93141 0.92482 0.92888 0.88100 0.88605 0.83382 0.81673
0.91593 0.85713 0.91381 0.82037 0.85622
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.07 9.91 71.98 0.71 -3.35 16
2 C -0.14 -5.39 6.23 30.59 0.19 -5.20 16
3 C 0.15 6.13 5.72 86.38 0.49 6.62 16
4 N -0.58 -28.26 2.42 -706.35 -1.71 -29.96 16
5 C -0.29 -15.39 9.45 84.03 0.79 -14.60 16
6 H 0.05 2.92 7.91 -2.91 -0.02 2.90 16
7 C -0.01 -0.75 4.96 84.86 0.42 -0.33 16
8 N -0.90 -48.98 11.46 21.65 0.25 -48.73 16
9 Si 0.95 42.66 29.60 68.60 2.03 44.70 16
10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16
11 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16
12 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16
13 C 0.23 10.65 5.95 85.63 0.51 11.16 16
14 C 0.18 8.22 7.91 88.33 0.70 8.92 16
15 N -0.32 -14.47 11.28 -165.31 -1.86 -16.33 16
16 N -0.30 -12.96 11.91 -166.31 -1.98 -14.95 16
17 C 0.18 7.44 7.99 87.30 0.70 8.14 16
18 C -0.08 -2.56 5.87 -20.09 -0.12 -2.68 16
19 C -0.03 -0.78 9.69 22.50 0.22 -0.56 16
20 C -0.15 -3.11 9.97 22.33 0.22 -2.89 16
21 C 0.15 3.11 6.69 22.58 0.15 3.27 16
22 O -0.32 -5.56 10.49 -91.66 -0.96 -6.52 16
23 C 0.01 0.12 9.81 113.37 1.11 1.23 16
24 C -0.20 -4.36 9.02 22.33 0.20 -4.16 16
25 C -0.05 -1.50 9.72 22.50 0.22 -1.28 16
26 O -0.23 -10.74 10.67 -9.13 -0.10 -10.83 16
27 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16
28 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16
29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16
30 H 0.04 1.78 7.02 -2.39 -0.02 1.76 16
31 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16
32 H 0.05 2.12 8.08 -2.39 -0.02 2.10 16
33 H 0.06 2.21 7.83 -2.39 -0.02 2.20 16
34 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16
35 H 0.10 5.22 5.51 -2.39 -0.01 5.21 16
36 H 0.10 4.12 7.86 -2.38 -0.02 4.11 16
37 H 0.15 3.69 7.86 -2.91 -0.02 3.67 16
38 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16
39 H 0.07 0.58 7.65 -2.39 -0.02 0.56 16
40 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16
41 H 0.07 0.56 7.65 -2.39 -0.02 0.54 16
42 H 0.16 2.50 6.28 -2.91 -0.02 2.48 16
43 H 0.13 3.77 7.93 -2.91 -0.02 3.74 16
Total: -1.00 -64.71 366.72 3.21 -61.50
By element:
Atomic # 1 Polarization: 15.81 SS G_CDS: 1.02 Total: 16.83 kcal
Atomic # 6 Polarization: -2.23 SS G_CDS: 6.52 Total: 4.29 kcal
Atomic # 7 Polarization: -104.66 SS G_CDS: -5.31 Total: -109.97 kcal
Atomic # 8 Polarization: -16.29 SS G_CDS: -1.06 Total: -17.35 kcal
Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.70 kcal
Total: -64.71 3.21 -61.50 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000344717236.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.918 kcal
(2) G-P(sol) polarization free energy of solvation -64.713 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.205 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.503 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.415 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds