Wall clock time and date at job start Tue Mar 31 2020 11:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47484 * 2 1 4 4 N 1.46493 * 109.47233 * 179.97438 * 3 2 1 5 5 C 1.36937 * 120.00345 * 275.33995 * 4 3 2 6 6 H 1.07996 * 120.00069 * 37.65726 * 5 4 3 7 7 C 1.38810 * 119.99851 * 217.65837 * 5 4 3 8 8 N 1.31617 * 120.00375 * 21.21160 * 7 5 4 9 9 Si 1.86805 * 119.99831 * 201.21255 * 7 5 4 10 10 H 1.48503 * 109.46908 * 59.99967 * 9 7 5 11 11 H 1.48500 * 109.47267 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47038 * 300.00214 * 9 7 5 13 13 C 1.46501 * 119.99988 * 95.33856 * 4 3 2 14 14 C 1.50702 * 109.47452 * 270.00433 * 13 4 3 15 15 N 1.30343 * 126.18723 * 89.95180 * 14 13 4 16 16 N 1.28666 * 109.53781 * 179.76743 * 15 14 13 17 17 C 1.31273 * 109.25054 * 0.44689 * 16 15 14 18 18 C 1.47773 * 126.38495 * 179.82478 * 17 16 15 19 19 C 1.39619 * 120.08836 * 359.69308 * 18 17 16 20 20 C 1.37821 * 119.91466 * 179.97438 * 19 18 17 21 21 C 1.38890 * 120.08615 * 359.97438 * 20 19 18 22 22 O 1.35831 * 119.91168 * 180.02562 * 21 20 19 23 23 C 1.42904 * 116.99991 * 180.02562 * 22 21 20 24 24 C 1.38892 * 120.17253 * 0.02562 * 21 20 19 25 25 C 1.37820 * 120.09166 * 359.97438 * 24 21 20 26 26 O 1.34468 * 126.17822 * 269.99841 * 14 13 4 27 27 H 1.09000 * 109.47416 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47426 * 300.00173 * 1 2 3 29 29 H 1.08998 * 109.47104 * 60.00024 * 1 2 3 30 30 H 1.08996 * 109.47331 * 239.99416 * 2 1 3 31 31 H 1.09005 * 109.46752 * 119.99913 * 2 1 3 32 32 H 1.09002 * 109.46931 * 59.99524 * 3 2 1 33 33 H 1.08998 * 109.46930 * 300.00082 * 3 2 1 34 34 H 0.96998 * 120.00102 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.47786 * 149.99406 * 13 4 3 36 36 H 1.09009 * 109.47120 * 30.00046 * 13 4 3 37 37 H 1.08004 * 120.04165 * 359.97438 * 19 18 17 38 38 H 1.07997 * 119.95932 * 179.72173 * 20 19 18 39 39 H 1.09002 * 109.47058 * 59.99324 * 23 22 21 40 40 H 1.08995 * 109.47317 * 179.97438 * 23 22 21 41 41 H 1.09000 * 109.46667 * 299.99780 * 23 22 21 42 42 H 1.07999 * 119.95507 * 179.97438 * 24 21 20 43 43 H 1.07998 * 120.04685 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4424 0.0006 5 6 4.1892 1.3322 1.1816 6 1 3.8177 0.6855 1.9627 7 6 5.3604 2.0518 1.3750 8 7 5.6019 3.1231 0.6496 9 14 6.5937 1.4996 2.6647 10 1 7.0641 0.1280 2.3446 11 1 7.7512 2.4299 2.6732 12 1 5.9466 1.5016 4.0013 13 6 4.2380 1.5603 -1.2623 14 6 4.4893 0.1860 -1.8275 15 7 3.7064 -0.4671 -2.6395 16 7 4.2336 -1.6063 -2.9222 17 6 5.3764 -1.7238 -2.2872 18 6 6.2925 -2.8822 -2.3381 19 6 5.9687 -3.9970 -3.1139 20 6 6.8260 -5.0752 -3.1592 21 6 8.0109 -5.0536 -2.4350 22 8 8.8534 -6.1180 -2.4827 23 6 10.0544 -6.0297 -1.7133 24 6 8.3365 -3.9465 -1.6621 25 6 7.4846 -2.8643 -1.6115 26 8 5.5614 -0.5883 -1.5844 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 6.4205 3.6258 0.7844 35 1 5.1903 2.0598 -1.0846 36 1 3.6492 2.1425 -1.9713 37 1 5.0477 -4.0144 -3.6777 38 1 6.5741 -5.9398 -3.7555 39 1 9.8029 -5.9022 -0.6604 40 1 10.6349 -6.9436 -1.8397 41 1 10.6413 -5.1762 -2.0526 42 1 9.2586 -3.9336 -1.1000 43 1 7.7387 -2.0037 -1.0106 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344717236.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:57 Heat of formation + Delta-G solvation = 20.414958 kcal Electronic energy + Delta-G solvation = -26242.776035 eV Core-core repulsion = 22483.201230 eV Total energy + Delta-G solvation = -3759.574805 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.96010 -41.18576 -38.64767 -38.18257 -37.03723 -34.77791 -33.72759 -32.58659 -32.33513 -30.74409 -28.55684 -27.89209 -27.45369 -24.95614 -24.62684 -23.68748 -22.72696 -22.48190 -21.93848 -19.37951 -19.06434 -18.41082 -18.05590 -17.41579 -17.15457 -16.71961 -16.65545 -16.06573 -15.76930 -15.61000 -15.50586 -14.97646 -14.79302 -14.52202 -14.06666 -13.90039 -13.73683 -13.41987 -13.40013 -13.29970 -12.95225 -12.82948 -12.78974 -12.68088 -12.52203 -12.37586 -12.28801 -12.10907 -11.98536 -11.96674 -11.83088 -11.45361 -10.74361 -10.64701 -10.21560 -9.11988 -8.82497 -8.04089 -5.66119 -0.49188 0.19288 0.69714 1.37111 1.42713 1.45223 1.49064 1.51083 2.22839 2.40896 2.61903 2.88206 3.13551 3.49782 3.54956 3.67350 3.77610 4.00787 4.12031 4.19582 4.32453 4.34927 4.39697 4.41065 4.44503 4.51708 4.57144 4.65513 4.75268 4.75954 4.78632 4.87815 4.91969 5.04842 5.12882 5.15944 5.19861 5.26219 5.32387 5.36141 5.48588 5.54945 5.57844 6.26530 6.29911 6.93957 7.35589 7.58492 8.12780 8.95788 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012097 B = 0.004000 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.114259 B = 6998.592188 C = 8491.024122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.137 4.137 3 C 0.146 3.854 4 N -0.575 5.575 5 C -0.287 4.287 6 H 0.054 0.946 7 C -0.014 4.014 8 N -0.901 5.901 9 Si 0.952 3.048 10 H -0.283 1.283 11 H -0.282 1.282 12 H -0.272 1.272 13 C 0.226 3.774 14 C 0.177 3.823 15 N -0.319 5.319 16 N -0.303 5.303 17 C 0.183 3.817 18 C -0.080 4.080 19 C -0.030 4.030 20 C -0.149 4.149 21 C 0.151 3.849 22 O -0.321 6.321 23 C 0.012 3.988 24 C -0.203 4.203 25 C -0.053 4.053 26 O -0.232 6.232 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.032 0.968 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.262 0.738 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.148 0.852 38 H 0.166 0.834 39 H 0.065 0.935 40 H 0.125 0.875 41 H 0.068 0.932 42 H 0.162 0.838 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.548 -14.968 -5.125 17.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.177 4.177 3 C 0.021 3.979 4 N -0.294 5.294 5 C -0.417 4.417 6 H 0.072 0.928 7 C -0.214 4.214 8 N -0.543 5.543 9 Si 0.779 3.221 10 H -0.209 1.209 11 H -0.207 1.207 12 H -0.197 1.197 13 C 0.095 3.905 14 C -0.036 4.036 15 N -0.166 5.166 16 N -0.150 5.150 17 C -0.026 4.026 18 C -0.082 4.082 19 C -0.049 4.049 20 C -0.167 4.167 21 C 0.104 3.896 22 O -0.233 6.233 23 C -0.082 4.082 24 C -0.222 4.222 25 C -0.073 4.073 26 O -0.112 6.112 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.166 0.834 38 H 0.183 0.817 39 H 0.084 0.916 40 H 0.143 0.857 41 H 0.086 0.914 42 H 0.180 0.820 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.607 -15.220 -5.941 17.274 hybrid contribution 1.686 0.470 1.642 2.400 sum 7.293 -14.750 -4.300 17.007 Atomic orbital electron populations 1.21610 0.93773 1.01694 1.02238 1.21962 0.96996 0.99006 0.99766 1.21154 0.82170 0.94509 1.00064 1.43968 1.01376 1.83030 1.01006 1.19124 1.07264 1.21236 0.94088 0.92849 1.25802 1.01537 0.94160 0.99909 1.70008 1.26183 1.14890 1.43200 0.85592 0.79009 0.77753 0.79723 1.20881 1.20696 1.19692 1.19817 1.01445 0.82077 0.87131 1.30993 0.80319 0.99174 0.93122 1.74218 1.25663 1.00748 1.16007 1.74443 1.06351 1.12419 1.21800 1.25961 0.95913 0.88428 0.92286 1.17357 0.94293 0.90476 1.06050 1.21040 0.99418 0.89823 0.94652 1.20564 0.92654 1.00320 1.03203 1.19355 0.90459 0.86482 0.93301 1.86071 1.32505 1.37537 1.67210 1.23461 0.83668 1.05521 0.95505 1.21345 1.02856 0.93504 1.04457 1.21127 0.91761 0.98753 0.95650 1.84952 1.43548 1.25465 1.57192 0.92626 0.92034 0.91980 0.94034 0.94946 0.93141 0.92482 0.92888 0.88100 0.88605 0.83382 0.81673 0.91593 0.85713 0.91381 0.82037 0.85622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 9.91 71.98 0.71 -3.35 16 2 C -0.14 -5.39 6.23 30.59 0.19 -5.20 16 3 C 0.15 6.13 5.72 86.38 0.49 6.62 16 4 N -0.58 -28.26 2.42 -706.35 -1.71 -29.96 16 5 C -0.29 -15.39 9.45 84.03 0.79 -14.60 16 6 H 0.05 2.92 7.91 -2.91 -0.02 2.90 16 7 C -0.01 -0.75 4.96 84.86 0.42 -0.33 16 8 N -0.90 -48.98 11.46 21.65 0.25 -48.73 16 9 Si 0.95 42.66 29.60 68.60 2.03 44.70 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 13 C 0.23 10.65 5.95 85.63 0.51 11.16 16 14 C 0.18 8.22 7.91 88.33 0.70 8.92 16 15 N -0.32 -14.47 11.28 -165.31 -1.86 -16.33 16 16 N -0.30 -12.96 11.91 -166.31 -1.98 -14.95 16 17 C 0.18 7.44 7.99 87.30 0.70 8.14 16 18 C -0.08 -2.56 5.87 -20.09 -0.12 -2.68 16 19 C -0.03 -0.78 9.69 22.50 0.22 -0.56 16 20 C -0.15 -3.11 9.97 22.33 0.22 -2.89 16 21 C 0.15 3.11 6.69 22.58 0.15 3.27 16 22 O -0.32 -5.56 10.49 -91.66 -0.96 -6.52 16 23 C 0.01 0.12 9.81 113.37 1.11 1.23 16 24 C -0.20 -4.36 9.02 22.33 0.20 -4.16 16 25 C -0.05 -1.50 9.72 22.50 0.22 -1.28 16 26 O -0.23 -10.74 10.67 -9.13 -0.10 -10.83 16 27 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 28 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.04 1.78 7.02 -2.39 -0.02 1.76 16 31 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.05 2.12 8.08 -2.39 -0.02 2.10 16 33 H 0.06 2.21 7.83 -2.39 -0.02 2.20 16 34 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 35 H 0.10 5.22 5.51 -2.39 -0.01 5.21 16 36 H 0.10 4.12 7.86 -2.38 -0.02 4.11 16 37 H 0.15 3.69 7.86 -2.91 -0.02 3.67 16 38 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 39 H 0.07 0.58 7.65 -2.39 -0.02 0.56 16 40 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.07 0.56 7.65 -2.39 -0.02 0.54 16 42 H 0.16 2.50 6.28 -2.91 -0.02 2.48 16 43 H 0.13 3.77 7.93 -2.91 -0.02 3.74 16 Total: -1.00 -64.71 366.72 3.21 -61.50 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 1.02 Total: 16.83 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 6.52 Total: 4.29 kcal Atomic # 7 Polarization: -104.66 SS G_CDS: -5.31 Total: -109.97 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -1.06 Total: -17.35 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.70 kcal Total: -64.71 3.21 -61.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344717236.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.918 kcal (2) G-P(sol) polarization free energy of solvation -64.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds