Wall clock time and date at job start Tue Mar 31 2020 12:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46520 * 2 1 4 4 C 1.53110 * 109.46243 * 240.02247 * 2 1 3 5 5 C 1.53434 * 109.72956 * 170.14653 * 4 2 1 6 6 C 1.50600 * 108.30745 * 50.04471 * 5 4 2 7 7 O 1.33190 * 129.60298 * 162.88823 * 6 5 4 8 8 N 1.21431 * 111.56828 * 179.97438 * 7 6 5 9 9 C 1.31491 * 111.52470 * 0.36299 * 8 7 6 10 10 C 1.48338 * 127.14979 * 179.74311 * 9 8 7 11 11 O 1.21500 * 119.99675 * 174.39474 * 10 9 8 12 12 N 1.34776 * 120.00222 * 354.39375 * 10 9 8 13 13 C 1.46499 * 120.00055 * 4.39042 * 12 10 9 14 14 C 1.50704 * 109.46882 * 83.71082 * 13 12 10 15 15 H 1.08002 * 119.99988 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99721 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00050 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99878 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46702 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47154 * 120.00079 * 18 16 14 21 21 H 1.48504 * 109.46892 * 240.00185 * 18 16 14 22 22 C 1.46495 * 119.99951 * 184.39100 * 12 10 9 23 23 C 1.53001 * 109.47040 * 94.91462 * 22 12 10 24 24 C 1.47206 * 109.47080 * 180.02562 * 23 22 12 25 25 N 9.83656 * 107.17809 * 117.13007 * 2 1 3 26 26 C 1.35376 * 123.76466 * 343.20787 * 6 5 4 27 27 C 1.50069 * 124.93339 * 359.88474 * 26 6 5 28 28 H 1.08997 * 109.47563 * 300.01691 * 1 2 3 29 29 H 1.09002 * 109.47286 * 60.02613 * 1 2 3 30 30 H 1.09005 * 109.46812 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.42451 * 290.23899 * 4 2 1 32 32 H 1.09004 * 109.42256 * 50.12559 * 4 2 1 33 33 H 1.09001 * 109.72311 * 290.33091 * 5 4 2 34 34 H 1.08999 * 109.67700 * 169.73982 * 5 4 2 35 35 H 1.08995 * 109.47225 * 203.71219 * 13 12 10 36 36 H 1.08998 * 109.47122 * 323.71237 * 13 12 10 37 37 H 0.97001 * 119.99524 * 180.02562 * 17 16 14 38 38 H 1.08995 * 109.47462 * 214.91562 * 22 12 10 39 39 H 1.09004 * 109.47316 * 334.91544 * 22 12 10 40 40 H 1.09008 * 109.47425 * 299.99832 * 23 22 12 41 41 H 1.08997 * 109.47243 * 60.00209 * 23 22 12 42 42 H 1.08999 * 109.71117 * 103.51448 * 27 26 6 43 43 H 1.08994 * 109.70608 * 224.10498 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2505 5 6 3.5543 -0.5143 -1.3863 6 6 4.1980 -0.8507 -0.0670 7 8 5.4730 -1.1155 0.2126 8 7 5.6324 -1.3454 1.3942 9 6 4.4989 -1.2743 2.0568 10 6 4.2947 -1.4968 3.5091 11 8 3.2042 -1.2979 4.0067 12 7 5.3187 -1.9195 4.2767 13 6 6.6561 -2.0671 3.6973 14 6 7.3560 -0.7324 3.7030 15 1 6.8548 0.1385 4.0990 16 6 8.6365 -0.6234 3.2037 17 7 9.2470 -1.6840 2.7220 18 14 9.5044 1.0308 3.2114 19 1 8.6081 2.0571 3.8017 20 1 10.7467 0.9343 4.0190 21 1 9.8478 1.4161 1.8189 22 6 5.0943 -2.2315 5.6903 23 6 4.8345 -3.7312 5.8466 24 6 4.6084 -4.0446 7.2670 25 7 4.4351 -4.2855 8.3638 26 6 3.5182 -0.9424 1.1001 27 6 2.0416 -0.7234 1.2540 28 1 -0.3634 0.5141 0.8898 29 1 -0.3634 0.5134 -0.8902 30 1 -0.3633 -1.0277 0.0005 31 1 1.8256 -1.7868 -1.1673 32 1 1.5395 -0.3184 -2.1310 33 1 3.7621 0.5247 -1.6421 34 1 3.9461 -1.1700 -2.1640 35 1 7.2308 -2.7812 4.2871 36 1 6.5703 -2.4279 2.6724 37 1 10.1480 -1.6073 2.3710 38 1 5.9756 -1.9533 6.2682 39 1 4.2310 -1.6735 6.0530 40 1 3.9530 -4.0095 5.2688 41 1 5.6977 -4.2892 5.4840 42 1 1.5362 -1.6837 1.3564 43 1 1.8508 -0.1117 2.1357 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345839816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:03 Heat of formation + Delta-G solvation = 29.207573 kcal Electronic energy + Delta-G solvation = -26952.346340 eV Core-core repulsion = 23193.152812 eV Total energy + Delta-G solvation = -3759.193528 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.91472 -40.81399 -38.98956 -37.98615 -36.87047 -34.97167 -34.56013 -33.23284 -32.52046 -31.03425 -29.09171 -28.04769 -26.46193 -25.14856 -24.47988 -23.55138 -22.81628 -20.80758 -19.88272 -19.01897 -18.52257 -18.35845 -17.98806 -17.68805 -16.92365 -16.36461 -16.09338 -15.86569 -15.72159 -15.11510 -14.90571 -14.67891 -14.47287 -14.28239 -14.18050 -14.10990 -13.67273 -13.65666 -13.58720 -13.32935 -13.04578 -12.90755 -12.75842 -12.71482 -12.42449 -12.22439 -11.90009 -11.79877 -11.73735 -11.63701 -11.49662 -11.40497 -11.07035 -11.02424 -10.49735 -9.90847 -9.61732 -8.14181 -6.22643 0.36544 0.81960 1.36452 1.40114 1.48182 1.57952 1.73319 1.99588 2.20628 2.29803 2.43688 3.03221 3.19612 3.21855 3.61735 3.75448 3.92377 3.99425 4.04315 4.12592 4.18731 4.34199 4.43186 4.46603 4.59697 4.63976 4.78040 4.81838 4.87273 4.90245 4.95155 4.99971 5.04569 5.09549 5.21716 5.28151 5.39333 5.44698 5.47651 5.59046 5.69076 5.79664 6.13664 6.35792 6.49329 6.80844 7.06201 7.39672 7.45121 8.93094 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.008917 B = 0.005505 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.253895 B = 5084.771696 C = 7554.384878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 H 0.071 0.929 4 C -0.106 4.106 5 C -0.033 4.033 6 C -0.046 4.046 7 O 0.115 5.885 8 N -0.306 5.306 9 C -0.051 4.051 10 C 0.596 3.404 11 O -0.563 6.563 12 N -0.583 5.583 13 C 0.241 3.759 14 C -0.527 4.527 15 H 0.037 0.963 16 C 0.034 3.966 17 N -0.910 5.910 18 Si 0.939 3.061 19 H -0.279 1.279 20 H -0.276 1.276 21 H -0.280 1.280 22 C 0.120 3.880 23 C -0.029 4.029 24 C 0.246 3.754 25 N -0.484 5.484 26 C -0.171 4.171 27 C -0.031 4.031 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.034 0.966 36 H 0.054 0.946 37 H 0.264 0.736 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.080 0.920 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.335 0.592 -11.476 18.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 H 0.090 0.910 4 C -0.143 4.143 5 C -0.070 4.070 6 C -0.110 4.110 7 O 0.040 5.960 8 N -0.006 5.006 9 C -0.208 4.208 10 C 0.383 3.617 11 O -0.443 6.443 12 N -0.312 5.312 13 C 0.120 3.880 14 C -0.566 4.566 15 H 0.055 0.945 16 C -0.166 4.166 17 N -0.550 5.550 18 Si 0.766 3.234 19 H -0.204 1.204 20 H -0.201 1.201 21 H -0.206 1.206 22 C -0.004 4.004 23 C -0.070 4.070 24 C -0.071 4.071 25 N -0.162 5.162 26 C -0.177 4.177 27 C -0.069 4.069 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.098 0.902 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.711 -0.024 -9.193 16.507 hybrid contribution 0.617 1.053 0.128 1.227 sum -13.094 1.029 -9.065 15.959 Atomic orbital electron populations 1.21771 0.93087 1.02490 1.02472 1.21305 0.97045 0.99400 0.93304 0.91011 1.21733 0.92252 1.01726 0.98630 1.20532 0.94637 1.04343 0.87530 1.24962 0.82891 1.02896 1.00292 1.84795 1.28224 1.62143 1.20866 1.75343 1.21389 1.14389 0.89488 1.23074 0.90911 1.09680 0.97122 1.17100 0.83843 0.76867 0.83879 1.90659 1.25537 1.54422 1.73695 1.48056 1.10322 1.62859 1.10007 1.19539 0.76688 0.96467 0.95284 1.21396 0.99601 0.94925 1.40676 0.94504 1.25347 0.97714 0.98906 0.94668 1.69983 1.13873 1.29776 1.41320 0.85801 0.78682 0.81099 0.77806 1.20428 1.20144 1.20567 1.21314 1.03600 0.94011 0.81478 1.19655 1.06701 0.97620 0.83052 1.29077 0.91417 0.91939 0.94706 1.81216 1.11120 1.10293 1.13580 1.20910 0.99265 1.06832 0.90659 1.20032 0.86114 1.01357 0.99394 0.93119 0.90582 0.92104 0.91076 0.87084 0.87361 0.86935 0.94843 0.92813 0.92650 0.89309 0.89517 0.85842 0.85352 0.90198 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.16 71.98 0.66 -1.18 16 2 C -0.09 -1.57 2.71 -10.57 -0.03 -1.60 16 3 H 0.07 1.28 8.12 -2.39 -0.02 1.26 16 4 C -0.11 -1.36 5.18 30.78 0.16 -1.20 16 5 C -0.03 -0.53 6.31 29.96 0.19 -0.34 16 6 C -0.05 -1.32 7.38 24.99 0.18 -1.14 16 7 O 0.12 4.27 11.18 78.69 0.88 5.15 16 8 N -0.31 -13.30 8.14 -48.95 -0.40 -13.70 16 9 C -0.05 -2.08 6.84 42.55 0.29 -1.78 16 10 C 0.60 24.75 7.64 86.93 0.66 25.42 16 11 O -0.56 -23.56 15.53 -3.71 -0.06 -23.62 16 12 N -0.58 -23.41 2.47 -829.02 -2.05 -25.47 16 13 C 0.24 11.28 4.79 85.63 0.41 11.69 16 14 C -0.53 -27.80 8.54 25.60 0.22 -27.58 16 15 H 0.04 2.04 7.81 -2.91 -0.02 2.02 16 16 C 0.03 1.83 5.46 84.65 0.46 2.30 16 17 N -0.91 -50.27 13.29 21.45 0.28 -49.98 16 18 Si 0.94 43.20 29.54 68.60 2.03 45.22 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 22 C 0.12 3.88 5.42 86.38 0.47 4.35 16 23 C -0.03 -0.73 6.03 28.79 0.17 -0.56 16 24 C 0.25 6.82 15.43 89.44 1.38 8.20 16 25 N -0.48 -15.79 18.54 20.01 0.37 -15.42 16 26 C -0.17 -5.54 6.04 -20.06 -0.12 -5.66 16 27 C -0.03 -0.81 5.01 29.84 0.15 -0.66 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.07 0.94 8.12 -2.39 -0.02 0.92 16 32 H 0.11 0.77 8.11 -2.38 -0.02 0.75 16 33 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.03 1.58 8.02 -2.39 -0.02 1.56 16 36 H 0.05 2.72 5.33 -2.39 -0.01 2.71 16 37 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 38 H 0.09 2.88 8.11 -2.39 -0.02 2.86 16 39 H 0.09 2.82 7.23 -2.39 -0.02 2.80 16 40 H 0.12 2.80 8.14 -2.38 -0.02 2.78 16 41 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 42 H 0.08 1.97 8.12 -2.39 -0.02 1.96 16 43 H 0.06 1.93 7.75 -2.39 -0.02 1.91 16 Total: -1.00 -68.21 363.99 7.34 -60.87 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 1.03 Total: 6.70 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 5.26 Total: 10.25 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -1.79 Total: -104.57 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: 0.82 Total: -18.47 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -68.21 7.34 -60.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345839816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.081 kcal (2) G-P(sol) polarization free energy of solvation -68.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds