Wall clock time and date at job start Tue Mar 31 2020 12:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46651 * 2 1 4 4 C 1.53118 * 109.46030 * 119.97597 * 2 1 3 5 5 C 1.53429 * 109.72736 * 189.85178 * 4 2 1 6 6 C 1.50598 * 108.31343 * 309.98075 * 5 4 2 7 7 O 1.33190 * 129.59760 * 196.85337 * 6 5 4 8 8 N 1.21432 * 111.56464 * 179.80068 * 7 6 5 9 9 C 1.31497 * 111.52615 * 0.03697 * 8 7 6 10 10 C 1.48330 * 127.15321 * 179.97438 * 9 8 7 11 11 O 1.21500 * 120.00248 * 174.46092 * 10 9 8 12 12 N 1.34784 * 119.99936 * 354.45961 * 10 9 8 13 13 C 1.46494 * 120.00212 * 4.38198 * 12 10 9 14 14 C 1.50700 * 109.47017 * 83.74080 * 13 12 10 15 15 H 1.08000 * 120.00541 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00095 * 180.02562 * 14 13 12 17 17 N 1.31523 * 119.99747 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00281 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46922 * 89.99812 * 18 16 14 20 20 H 1.48500 * 109.47093 * 210.00170 * 18 16 14 21 21 H 1.48503 * 109.46989 * 330.00085 * 18 16 14 22 22 C 1.46501 * 119.99650 * 184.38103 * 12 10 9 23 23 C 1.52995 * 109.47180 * 88.69487 * 22 12 10 24 24 C 1.47200 * 109.47263 * 179.97438 * 23 22 12 25 25 N 9.60928 * 110.40445 * 265.78781 * 2 1 3 26 26 C 1.35374 * 123.76155 * 16.71078 * 6 5 4 27 27 C 1.50063 * 124.93873 * 0.22513 * 26 6 5 28 28 H 1.09001 * 109.47764 * 300.02450 * 1 2 3 29 29 H 1.09001 * 109.46539 * 60.02282 * 1 2 3 30 30 H 1.08997 * 109.47356 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.42342 * 69.77423 * 4 2 1 32 32 H 1.08997 * 109.38111 * 309.90645 * 4 2 1 33 33 H 1.09003 * 109.69100 * 190.27319 * 5 4 2 34 34 H 1.09004 * 109.69297 * 69.68733 * 5 4 2 35 35 H 1.08994 * 109.47172 * 203.73926 * 13 12 10 36 36 H 1.09001 * 109.47243 * 323.74248 * 13 12 10 37 37 H 0.97000 * 119.99754 * 180.02562 * 17 16 14 38 38 H 1.09003 * 109.47114 * 208.69397 * 22 12 10 39 39 H 1.08999 * 109.47286 * 328.68887 * 22 12 10 40 40 H 1.09000 * 109.47142 * 299.99447 * 23 22 12 41 41 H 1.09005 * 109.47272 * 59.99886 * 23 22 12 42 42 H 1.08996 * 109.70988 * 256.42253 * 27 26 6 43 43 H 1.09003 * 109.74015 * 135.80815 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 1.2506 5 6 3.5543 -0.5144 1.3864 6 6 4.1980 -0.8502 0.0670 7 8 5.4738 -1.1103 -0.2134 8 7 5.6324 -1.3456 -1.3941 9 6 4.4986 -1.2752 -2.0566 10 6 4.2943 -1.4980 -3.5087 11 8 3.1707 -1.4984 -3.9711 12 7 5.3551 -1.7000 -4.3153 13 6 6.7012 -1.7953 -3.7453 14 6 6.9455 -3.2033 -3.2669 15 1 6.1751 -3.9522 -3.3761 16 6 8.1524 -3.5353 -2.6887 17 7 9.0902 -2.6230 -2.5543 18 14 8.4551 -5.2804 -2.0950 19 1 9.0449 -6.0827 -3.1967 20 1 9.3926 -5.2559 -0.9436 21 1 7.1684 -5.8898 -1.6729 22 6 5.1618 -1.8242 -5.7622 23 6 5.2241 -0.4377 -6.4060 24 6 5.0306 -0.5626 -7.8599 25 7 4.8802 -0.6615 -8.9820 26 6 3.5180 -0.9430 -1.0999 27 6 2.0415 -0.7236 -1.2539 28 1 -0.3635 0.5142 0.8897 29 1 -0.3632 0.5135 -0.8902 30 1 -0.3634 -1.0276 0.0005 31 1 1.8258 -1.7868 1.1673 32 1 1.5387 -0.3183 2.1305 33 1 3.9463 -1.1701 2.1639 34 1 3.7615 0.5247 1.6424 35 1 7.4373 -1.5374 -4.5066 36 1 6.7899 -1.1058 -2.9057 37 1 9.9394 -2.8566 -2.1478 38 1 5.9463 -2.4547 -6.1808 39 1 4.1892 -2.2741 -5.9616 40 1 4.4396 0.1928 -5.9876 41 1 6.1968 0.0121 -6.2066 42 1 1.5359 -1.6838 -1.3562 43 1 1.8502 -0.1116 -2.1353 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345839823.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:08 Heat of formation + Delta-G solvation = 45.369939 kcal Electronic energy + Delta-G solvation = -26960.317179 eV Core-core repulsion = 23201.824504 eV Total energy + Delta-G solvation = -3758.492675 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.51108 -39.25343 -38.07870 -36.68730 -35.28038 -33.57292 -32.72455 -32.27813 -31.16930 -29.91743 -27.24737 -27.01885 -25.11687 -23.70435 -23.18283 -22.18610 -21.71914 -19.69279 -18.54949 -17.53591 -17.25558 -16.85431 -16.34861 -16.14020 -15.40947 -15.07135 -14.64402 -14.45002 -14.39058 -14.24475 -13.81847 -13.48312 -13.25308 -13.16243 -12.91159 -12.68570 -12.41885 -12.33672 -12.17472 -12.12369 -11.85094 -11.71968 -11.56180 -11.03533 -10.99984 -10.91919 -10.75274 -10.69616 -10.48596 -10.29571 -10.05684 -9.81234 -9.66091 -9.53044 -8.71021 -8.45519 -7.95479 -6.11336 -4.15150 1.79430 2.09854 2.81770 2.91090 3.25762 3.31039 3.32918 3.36204 3.53599 3.77220 4.26850 4.37686 4.53936 4.63268 4.70464 4.76328 5.09943 5.13740 5.19742 5.24937 5.27273 5.32044 5.35075 5.45177 5.58460 5.61732 5.67565 5.69006 5.80362 5.85999 5.86681 5.98000 6.02349 6.06620 6.18905 6.23767 6.31738 6.47349 6.56767 7.28997 7.43808 7.67115 7.79579 8.05508 8.10605 8.54506 8.80893 8.88629 9.49689 10.96798 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.008801 B = 0.005600 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3180.769554 B = 4998.492591 C = 7578.565430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.074 0.926 4 C -0.113 4.113 5 C -0.032 4.032 6 C -0.064 4.064 7 O 0.124 5.876 8 N -0.262 5.262 9 C -0.024 4.024 10 C 0.600 3.400 11 O -0.555 6.555 12 N -0.582 5.582 13 C 0.226 3.774 14 C -0.526 4.526 15 H 0.055 0.945 16 C 0.073 3.927 17 N -0.886 5.886 18 Si 0.890 3.110 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.276 1.276 22 C 0.126 3.874 23 C -0.046 4.046 24 C 0.221 3.779 25 N -0.448 5.448 26 C -0.157 4.157 27 C -0.033 4.033 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.037 0.963 36 H 0.066 0.934 37 H 0.263 0.737 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.079 0.921 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.931 7.152 8.285 16.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 H 0.092 0.908 4 C -0.150 4.150 5 C -0.070 4.070 6 C -0.127 4.127 7 O 0.047 5.953 8 N 0.039 4.961 9 C -0.182 4.182 10 C 0.387 3.613 11 O -0.434 6.434 12 N -0.312 5.312 13 C 0.107 3.893 14 C -0.564 4.564 15 H 0.073 0.927 16 C -0.130 4.130 17 N -0.524 5.524 18 Si 0.718 3.282 19 H -0.206 1.206 20 H -0.210 1.210 21 H -0.201 1.201 22 C 0.001 3.999 23 C -0.087 4.087 24 C -0.097 4.097 25 N -0.126 5.126 26 C -0.162 4.162 27 C -0.071 4.071 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.097 0.903 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.264 6.742 5.992 14.430 hybrid contribution -0.092 -0.974 0.799 1.263 sum -11.356 5.768 6.791 14.434 Atomic orbital electron populations 1.21801 0.94697 1.02027 1.01726 1.21310 0.95786 0.99844 0.94447 0.90770 1.21702 0.93399 1.01699 0.98228 1.20132 0.94113 1.02687 0.90029 1.23988 0.84737 1.05579 0.98433 1.84872 1.26303 1.62178 1.21898 1.75379 1.20704 1.11594 0.88431 1.22805 0.89996 1.08526 0.96911 1.16913 0.84403 0.76808 0.83161 1.90686 1.23386 1.53862 1.75450 1.48152 1.09967 1.67758 1.05274 1.19925 0.75459 0.98798 0.95146 1.21254 1.00037 0.94798 1.40360 0.92715 1.24788 0.95832 0.97078 0.95292 1.69906 1.05601 1.33065 1.43809 0.86621 0.78126 0.84909 0.78521 1.20647 1.21021 1.20075 1.21183 1.04077 0.93942 0.80742 1.19774 1.05700 1.01584 0.81632 1.29073 0.92609 0.93004 0.94973 1.81202 1.09673 1.08736 1.12959 1.20511 0.98046 1.06549 0.91087 1.19945 0.87935 1.01249 0.97923 0.92656 0.92415 0.92508 0.91151 0.90520 0.89284 0.89284 0.94454 0.91625 0.92708 0.88970 0.89705 0.87307 0.86901 0.90288 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.16 37.16 0.34 -0.80 16 2 C -0.10 -0.91 2.71 -90.28 -0.24 -1.15 16 3 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 4 C -0.11 -0.96 5.18 -26.45 -0.14 -1.10 16 5 C -0.03 -0.31 6.31 -27.71 -0.17 -0.48 16 6 C -0.06 -0.94 7.38 -35.38 -0.26 -1.20 16 7 O 0.12 2.28 11.18 19.19 0.21 2.49 16 8 N -0.26 -5.56 8.14 33.29 0.27 -5.29 16 9 C -0.02 -0.48 6.84 -82.82 -0.57 -1.05 16 10 C 0.60 12.17 7.64 -12.10 -0.09 12.08 16 11 O -0.56 -11.38 15.76 5.37 0.08 -11.29 16 12 N -0.58 -11.48 2.47 -176.00 -0.44 -11.91 16 13 C 0.23 5.19 4.76 -5.20 -0.02 5.17 16 14 C -0.53 -13.61 8.55 -34.44 -0.29 -13.90 16 15 H 0.05 1.48 7.81 -52.49 -0.41 1.07 16 16 C 0.07 1.94 5.46 -17.82 -0.10 1.85 16 17 N -0.89 -24.27 13.29 55.43 0.74 -23.54 16 18 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.13 2.03 5.35 -4.04 -0.02 2.01 16 23 C -0.05 -0.59 6.02 -29.52 -0.18 -0.77 16 24 C 0.22 3.16 15.44 -20.74 -0.32 2.84 16 25 N -0.45 -7.42 18.54 42.17 0.78 -6.64 16 26 C -0.16 -2.55 6.04 -104.92 -0.63 -3.18 16 27 C -0.03 -0.43 4.95 -27.91 -0.14 -0.57 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 32 H 0.08 0.48 8.11 -51.93 -0.42 0.06 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.04 0.87 8.02 -51.93 -0.42 0.46 16 36 H 0.07 1.61 5.33 -51.93 -0.28 1.34 16 37 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.09 1.47 8.06 -51.93 -0.42 1.06 16 39 H 0.08 1.38 7.40 -51.93 -0.38 0.99 16 40 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.08 1.06 8.12 -51.93 -0.42 0.64 16 43 H 0.08 1.17 7.94 -51.93 -0.41 0.75 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -30.85 364.38 -6.82 -37.67 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -6.10 Total: -2.66 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -2.84 Total: -0.27 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 1.35 Total: -47.38 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.30 Total: -8.80 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.85 -6.82 -37.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345839823.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.040 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds