Wall clock time and date at job start Tue Mar 31 2020 12:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46651 * 2 1 4 4 C 1.53118 * 109.46030 * 119.97597 * 2 1 3 5 5 C 1.53429 * 109.72736 * 189.85178 * 4 2 1 6 6 C 1.50598 * 108.31343 * 309.98075 * 5 4 2 7 7 O 1.33190 * 129.59760 * 196.85337 * 6 5 4 8 8 N 1.21432 * 111.56464 * 179.80068 * 7 6 5 9 9 C 1.31497 * 111.52615 * 0.03697 * 8 7 6 10 10 C 1.48330 * 127.15321 * 179.97438 * 9 8 7 11 11 O 1.21500 * 120.00248 * 174.46092 * 10 9 8 12 12 N 1.34784 * 119.99936 * 354.45961 * 10 9 8 13 13 C 1.46494 * 120.00212 * 4.38198 * 12 10 9 14 14 C 1.50700 * 109.47017 * 83.74080 * 13 12 10 15 15 H 1.08000 * 120.00541 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00095 * 180.02562 * 14 13 12 17 17 N 1.31523 * 119.99747 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00281 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46922 * 89.99812 * 18 16 14 20 20 H 1.48500 * 109.47093 * 210.00170 * 18 16 14 21 21 H 1.48503 * 109.46989 * 330.00085 * 18 16 14 22 22 C 1.46501 * 119.99650 * 184.38103 * 12 10 9 23 23 C 1.52995 * 109.47180 * 88.69487 * 22 12 10 24 24 C 1.47200 * 109.47263 * 179.97438 * 23 22 12 25 25 N 9.60928 * 110.40445 * 265.78781 * 2 1 3 26 26 C 1.35374 * 123.76155 * 16.71078 * 6 5 4 27 27 C 1.50063 * 124.93873 * 0.22513 * 26 6 5 28 28 H 1.09001 * 109.47764 * 300.02450 * 1 2 3 29 29 H 1.09001 * 109.46539 * 60.02282 * 1 2 3 30 30 H 1.08997 * 109.47356 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.42342 * 69.77423 * 4 2 1 32 32 H 1.08997 * 109.38111 * 309.90645 * 4 2 1 33 33 H 1.09003 * 109.69100 * 190.27319 * 5 4 2 34 34 H 1.09004 * 109.69297 * 69.68733 * 5 4 2 35 35 H 1.08994 * 109.47172 * 203.73926 * 13 12 10 36 36 H 1.09001 * 109.47243 * 323.74248 * 13 12 10 37 37 H 0.97000 * 119.99754 * 180.02562 * 17 16 14 38 38 H 1.09003 * 109.47114 * 208.69397 * 22 12 10 39 39 H 1.08999 * 109.47286 * 328.68887 * 22 12 10 40 40 H 1.09000 * 109.47142 * 299.99447 * 23 22 12 41 41 H 1.09005 * 109.47272 * 59.99886 * 23 22 12 42 42 H 1.08996 * 109.70988 * 256.42253 * 27 26 6 43 43 H 1.09003 * 109.74015 * 135.80815 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 1.2506 5 6 3.5543 -0.5144 1.3864 6 6 4.1980 -0.8502 0.0670 7 8 5.4738 -1.1103 -0.2134 8 7 5.6324 -1.3456 -1.3941 9 6 4.4986 -1.2752 -2.0566 10 6 4.2943 -1.4980 -3.5087 11 8 3.1707 -1.4984 -3.9711 12 7 5.3551 -1.7000 -4.3153 13 6 6.7012 -1.7953 -3.7453 14 6 6.9455 -3.2033 -3.2669 15 1 6.1751 -3.9522 -3.3761 16 6 8.1524 -3.5353 -2.6887 17 7 9.0902 -2.6230 -2.5543 18 14 8.4551 -5.2804 -2.0950 19 1 9.0449 -6.0827 -3.1967 20 1 9.3926 -5.2559 -0.9436 21 1 7.1684 -5.8898 -1.6729 22 6 5.1618 -1.8242 -5.7622 23 6 5.2241 -0.4377 -6.4060 24 6 5.0306 -0.5626 -7.8599 25 7 4.8802 -0.6615 -8.9820 26 6 3.5180 -0.9430 -1.0999 27 6 2.0415 -0.7236 -1.2539 28 1 -0.3635 0.5142 0.8897 29 1 -0.3632 0.5135 -0.8902 30 1 -0.3634 -1.0276 0.0005 31 1 1.8258 -1.7868 1.1673 32 1 1.5387 -0.3183 2.1305 33 1 3.9463 -1.1701 2.1639 34 1 3.7615 0.5247 1.6424 35 1 7.4373 -1.5374 -4.5066 36 1 6.7899 -1.1058 -2.9057 37 1 9.9394 -2.8566 -2.1478 38 1 5.9463 -2.4547 -6.1808 39 1 4.1892 -2.2741 -5.9616 40 1 4.4396 0.1928 -5.9876 41 1 6.1968 0.0121 -6.2066 42 1 1.5359 -1.6838 -1.3562 43 1 1.8502 -0.1116 -2.1353 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345839823.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:07 Heat of formation + Delta-G solvation = 29.266215 kcal Electronic energy + Delta-G solvation = -26961.015489 eV Core-core repulsion = 23201.824504 eV Total energy + Delta-G solvation = -3759.190985 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.91307 -40.81486 -38.98952 -37.97200 -36.86375 -34.97438 -34.55953 -33.23009 -32.52973 -31.03897 -29.07328 -28.04651 -26.47253 -25.12832 -24.48835 -23.57463 -22.81433 -20.80789 -19.85900 -18.92655 -18.62871 -18.43768 -17.96458 -17.62804 -16.91979 -16.35969 -16.07363 -15.89092 -15.70941 -15.13148 -14.86737 -14.65545 -14.49564 -14.28723 -14.19176 -14.10193 -13.67201 -13.66267 -13.58747 -13.35720 -13.00555 -12.90538 -12.78824 -12.72867 -12.40658 -12.20953 -11.91117 -11.79334 -11.75063 -11.65203 -11.49715 -11.38472 -11.07946 -11.02414 -10.49386 -9.90968 -9.61802 -8.14037 -6.22690 0.36721 0.82066 1.37374 1.39990 1.47357 1.57739 1.72972 1.99536 2.20662 2.29997 2.43688 3.02851 3.19637 3.22201 3.61833 3.75512 3.92324 3.99397 4.04006 4.12493 4.18562 4.34727 4.43401 4.45961 4.60148 4.63689 4.77491 4.82363 4.86981 4.89893 4.94905 4.99151 5.04661 5.09930 5.21350 5.28258 5.39066 5.44127 5.47596 5.59520 5.69077 5.79596 6.13549 6.35835 6.49180 6.80716 7.06264 7.39822 7.45025 8.93067 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.008801 B = 0.005600 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3180.769554 B = 4998.492591 C = 7578.565430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.080 0.920 4 C -0.109 4.109 5 C -0.032 4.032 6 C -0.047 4.047 7 O 0.115 5.885 8 N -0.306 5.306 9 C -0.051 4.051 10 C 0.596 3.404 11 O -0.562 6.562 12 N -0.583 5.583 13 C 0.241 3.759 14 C -0.528 4.528 15 H 0.037 0.963 16 C 0.034 3.966 17 N -0.910 5.910 18 Si 0.940 3.060 19 H -0.274 1.274 20 H -0.279 1.279 21 H -0.282 1.282 22 C 0.122 3.878 23 C -0.029 4.029 24 C 0.246 3.754 25 N -0.484 5.484 26 C -0.172 4.172 27 C -0.031 4.031 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.032 0.968 36 H 0.054 0.946 37 H 0.264 0.736 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.122 0.878 41 H 0.130 0.870 42 H 0.070 0.930 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.185 7.808 10.191 18.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 H 0.098 0.902 4 C -0.146 4.146 5 C -0.070 4.070 6 C -0.111 4.111 7 O 0.040 5.960 8 N -0.006 5.006 9 C -0.208 4.208 10 C 0.383 3.617 11 O -0.442 6.442 12 N -0.313 5.313 13 C 0.121 3.879 14 C -0.567 4.567 15 H 0.055 0.945 16 C -0.166 4.166 17 N -0.549 5.549 18 Si 0.767 3.233 19 H -0.199 1.199 20 H -0.205 1.205 21 H -0.207 1.207 22 C -0.003 4.003 23 C -0.070 4.070 24 C -0.071 4.071 25 N -0.162 5.162 26 C -0.177 4.177 27 C -0.068 4.068 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.134 0.866 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.140 0.860 41 H 0.147 0.853 42 H 0.089 0.911 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.525 7.396 7.877 16.541 hybrid contribution 0.230 -1.169 0.261 1.219 sum -12.295 6.227 8.138 16.005 Atomic orbital electron populations 1.21778 0.93245 1.02248 1.02641 1.21300 0.96909 0.99632 0.92966 0.90155 1.21749 0.92509 1.01415 0.98949 1.20524 0.94431 1.04594 0.87408 1.24965 0.83066 1.02772 1.00249 1.84795 1.28244 1.62031 1.20952 1.75341 1.21935 1.13775 0.89591 1.23089 0.91116 1.09400 0.97198 1.17093 0.84338 0.76611 0.83652 1.90663 1.23394 1.54371 1.75769 1.48067 1.08775 1.67801 1.06614 1.19537 0.76757 0.97044 0.94601 1.21371 0.99487 0.95699 1.40159 0.94479 1.25355 0.95811 0.99917 0.95561 1.69979 1.05909 1.34376 1.44682 0.85841 0.77615 0.81512 0.78333 1.19928 1.20474 1.20722 1.21310 1.03953 0.95932 0.79058 1.19656 1.07142 0.99793 0.80447 1.29087 0.91380 0.91872 0.94799 1.81231 1.11082 1.09825 1.14069 1.20907 0.99186 1.06873 0.90709 1.20019 0.86060 1.01085 0.99668 0.90473 0.92810 0.92656 0.91857 0.86959 0.87415 0.86627 0.94963 0.92806 0.92639 0.89030 0.89848 0.86013 0.85258 0.91131 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.16 71.98 0.66 -1.18 16 2 C -0.09 -1.48 2.71 -10.57 -0.03 -1.51 16 3 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 4 C -0.11 -1.45 5.18 30.78 0.16 -1.29 16 5 C -0.03 -0.51 6.31 29.96 0.19 -0.32 16 6 C -0.05 -1.32 7.38 24.99 0.18 -1.14 16 7 O 0.12 4.28 11.18 78.69 0.88 5.16 16 8 N -0.31 -13.33 8.14 -48.95 -0.40 -13.73 16 9 C -0.05 -2.08 6.84 42.55 0.29 -1.79 16 10 C 0.60 24.68 7.64 86.93 0.66 25.34 16 11 O -0.56 -23.37 15.76 -3.72 -0.06 -23.43 16 12 N -0.58 -23.41 2.47 -829.03 -2.05 -25.46 16 13 C 0.24 11.33 4.76 85.63 0.41 11.74 16 14 C -0.53 -27.89 8.55 25.60 0.22 -27.67 16 15 H 0.04 2.05 7.81 -2.91 -0.02 2.03 16 16 C 0.03 1.83 5.46 84.65 0.46 2.30 16 17 N -0.91 -50.37 13.29 21.45 0.28 -50.08 16 18 Si 0.94 43.23 29.54 68.60 2.03 45.26 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 22 C 0.12 3.92 5.35 86.38 0.46 4.38 16 23 C -0.03 -0.73 6.02 28.79 0.17 -0.56 16 24 C 0.25 6.81 15.44 89.44 1.38 8.19 16 25 N -0.48 -15.78 18.54 20.01 0.37 -15.41 16 26 C -0.17 -5.54 6.04 -20.06 -0.12 -5.67 16 27 C -0.03 -0.79 4.95 29.83 0.15 -0.64 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.97 8.12 -2.39 -0.02 0.95 16 32 H 0.11 0.81 8.11 -2.39 -0.02 0.79 16 33 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.03 1.54 8.02 -2.39 -0.02 1.52 16 36 H 0.05 2.73 5.33 -2.39 -0.01 2.72 16 37 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 38 H 0.09 2.95 8.06 -2.39 -0.02 2.93 16 39 H 0.08 2.72 7.40 -2.39 -0.02 2.70 16 40 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 41 H 0.13 2.90 8.14 -2.38 -0.02 2.88 16 42 H 0.07 1.90 8.12 -2.39 -0.02 1.88 16 43 H 0.07 1.98 7.94 -2.39 -0.02 1.96 16 Total: -1.00 -68.15 364.38 7.33 -60.82 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 1.03 Total: 6.69 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 5.25 Total: 10.19 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -1.79 Total: -104.68 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: 0.82 Total: -18.28 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -68.15 7.33 -60.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345839823.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.087 kcal (2) G-P(sol) polarization free energy of solvation -68.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds