Wall clock time and date at job start Tue Mar 31 2020 11:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47347 * 2 1 4 4 N 1.46502 * 109.46775 * 179.97438 * 3 2 1 5 5 C 1.36893 * 120.00718 * 295.09562 * 4 3 2 6 6 H 1.08003 * 119.99323 * 42.62535 * 5 4 3 7 7 C 1.39012 * 120.00308 * 222.62549 * 5 4 3 8 8 N 1.31384 * 120.00282 * 40.03735 * 7 5 4 9 9 Si 1.86800 * 119.99998 * 220.03185 * 7 5 4 10 10 H 1.48503 * 109.47362 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47348 * 120.00198 * 9 7 5 12 12 H 1.48507 * 109.47358 * 240.00262 * 9 7 5 13 13 C 1.34784 * 119.99581 * 115.10338 * 4 3 2 14 14 O 1.21638 * 120.00054 * 175.91492 * 13 4 3 15 15 C 1.47395 * 119.99844 * 355.63295 * 13 4 3 16 16 C 1.40219 * 119.95745 * 329.22362 * 15 13 4 17 17 C 1.36177 * 120.48865 * 179.97438 * 16 15 13 18 18 C 1.40037 * 120.09809 * 0.02562 * 17 16 15 19 19 N 1.35553 * 133.26681 * 180.02562 * 18 17 16 20 20 C 1.30927 * 109.71880 * 180.02562 * 19 18 17 21 21 O 1.35201 * 125.01207 * 180.02562 * 20 19 18 22 22 C 1.42893 * 117.00193 * 359.97327 * 21 20 19 23 23 C 1.52999 * 109.47167 * 180.02562 * 22 21 20 24 24 N 1.36262 * 109.97412 * 359.97438 * 20 19 18 25 25 H 0.97001 * 126.40128 * 180.02562 * 24 20 19 26 26 C 1.38568 * 107.19899 * 0.02562 * 24 20 19 27 27 C 1.38195 * 133.88370 * 180.35412 * 26 24 20 28 28 H 1.09005 * 109.46580 * 300.00140 * 1 2 3 29 29 H 1.08997 * 109.47343 * 59.99236 * 1 2 3 30 30 H 1.08993 * 109.47794 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47002 * 239.99910 * 2 1 3 32 32 H 1.09005 * 109.47084 * 120.00163 * 2 1 3 33 33 H 1.09003 * 109.47034 * 60.00747 * 3 2 1 34 34 H 1.08992 * 109.47368 * 299.99947 * 3 2 1 35 35 H 0.96997 * 119.99937 * 184.97710 * 8 7 5 36 36 H 1.07999 * 119.75221 * 0.02562 * 16 15 13 37 37 H 1.08009 * 119.95387 * 180.02562 * 17 16 15 38 38 H 1.08998 * 109.47152 * 299.99949 * 22 21 20 39 39 H 1.08993 * 109.47860 * 60.00231 * 22 21 20 40 40 H 1.09001 * 109.47506 * 59.99684 * 23 22 21 41 41 H 1.09000 * 109.47418 * 180.02562 * 23 22 21 42 42 H 1.09005 * 109.47133 * 299.99681 * 23 22 21 43 43 H 1.07996 * 120.21545 * 359.92364 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.1891 0.9396 1.0745 6 1 3.8629 0.0218 1.5410 7 6 5.3037 1.6104 1.5646 8 7 5.3017 2.9223 1.6371 9 14 6.8043 0.6467 2.1203 10 1 6.5554 -0.8058 1.9375 11 1 7.9810 1.0525 1.3105 12 1 7.0698 0.9273 3.5543 13 6 4.1794 1.9373 -1.0562 14 8 5.3934 2.0058 -1.0252 15 6 3.4460 2.3899 -2.2520 16 6 2.2359 1.7760 -2.6053 17 6 1.5492 2.1859 -3.7075 18 6 2.0490 3.2272 -4.4993 19 7 1.6008 3.8363 -5.6243 20 6 2.4426 4.7717 -5.9855 21 8 2.2971 5.5713 -7.0659 22 6 1.1320 5.3714 -7.8687 23 6 1.1414 6.3599 -9.0364 24 7 3.4866 4.8213 -5.1111 25 1 4.2441 5.4257 -5.1528 26 6 3.2637 3.8471 -4.1513 27 6 3.9550 3.4323 -3.0288 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8901 34 1 1.6768 1.9563 -0.8899 35 1 6.1038 3.3941 1.9105 36 1 1.8452 0.9727 -1.9983 37 1 0.6177 1.7071 -3.9715 38 1 1.1279 4.3524 -8.2557 39 1 0.2407 5.5333 -7.2625 40 1 2.0326 6.1976 -9.6427 41 1 0.2525 6.2077 -9.6486 42 1 1.1457 7.3790 -8.6498 43 1 4.8846 3.9094 -2.7559 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346208931.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:50 Heat of formation + Delta-G solvation = 30.012260 kcal Electronic energy + Delta-G solvation = -26411.357447 eV Core-core repulsion = 22652.198813 eV Total energy + Delta-G solvation = -3759.158634 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.03587 -39.35475 -38.56844 -36.07703 -35.23256 -33.08871 -32.70129 -31.96808 -31.23601 -29.76116 -28.85469 -25.83318 -24.82184 -23.90184 -22.68259 -22.27388 -21.18778 -20.82495 -19.68933 -18.67034 -17.69575 -17.11167 -16.79903 -16.16953 -15.46426 -14.91516 -14.79825 -14.69704 -14.31005 -14.14342 -13.83297 -13.52504 -13.31858 -13.12225 -13.00266 -12.96980 -12.50764 -12.17257 -11.95939 -11.68418 -11.54939 -11.49046 -11.23183 -10.96871 -10.95481 -10.82749 -10.62907 -10.56160 -10.28755 -10.09466 -9.93200 -9.87029 -8.64139 -8.20707 -8.06419 -7.64006 -7.30100 -6.27008 -3.81748 1.11663 1.70273 1.87925 2.80493 3.35648 3.50152 3.51396 3.63909 3.87864 4.26818 4.32853 4.59785 4.66729 4.68823 4.85446 5.00785 5.04696 5.21262 5.34017 5.38455 5.44050 5.46922 5.50992 5.61825 5.63174 5.65571 5.69683 5.82517 5.96342 6.08188 6.23108 6.30207 6.33408 6.38039 6.43630 6.67430 6.75171 6.75784 6.86376 6.94727 7.07013 7.49894 7.62948 7.87649 8.21501 8.96638 9.11970 9.59612 10.19852 10.77075 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018808 B = 0.003376 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.340730 B = 8292.647530 C = 9500.998757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.073 3.927 4 N -0.428 5.428 5 C -0.370 4.370 6 H 0.085 0.915 7 C 0.102 3.898 8 N -0.810 5.810 9 Si 0.891 3.109 10 H -0.269 1.269 11 H -0.278 1.278 12 H -0.290 1.290 13 C 0.502 3.498 14 O -0.553 6.553 15 C -0.084 4.084 16 C -0.109 4.109 17 C -0.087 4.087 18 C 0.075 3.925 19 N -0.534 5.534 20 C 0.462 3.538 21 O -0.302 6.302 22 C 0.078 3.922 23 C -0.153 4.153 24 N -0.588 5.588 25 H 0.426 0.574 26 C 0.041 3.959 27 C -0.059 4.059 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.265 0.735 36 H 0.153 0.847 37 H 0.129 0.871 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.319 3.956 -15.213 18.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C -0.050 4.050 4 N -0.147 5.147 5 C -0.495 4.495 6 H 0.103 0.897 7 C -0.112 4.112 8 N -0.442 5.442 9 Si 0.716 3.284 10 H -0.193 1.193 11 H -0.204 1.204 12 H -0.217 1.217 13 C 0.291 3.709 14 O -0.435 6.435 15 C -0.089 4.089 16 C -0.129 4.129 17 C -0.107 4.107 18 C -0.042 4.042 19 N -0.273 5.273 20 C 0.158 3.842 21 O -0.206 6.206 22 C 0.003 3.997 23 C -0.211 4.211 24 N -0.210 5.210 25 H 0.265 0.735 26 C -0.065 4.065 27 C -0.081 4.081 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.170 0.830 37 H 0.147 0.853 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.302 4.149 -15.606 19.154 hybrid contribution 1.751 0.337 0.533 1.862 sum -8.550 4.485 -15.072 17.900 Atomic orbital electron populations 1.21743 0.96279 1.01086 1.01616 1.21861 0.94663 0.98498 1.02701 1.22347 0.84466 0.95838 1.02334 1.43195 1.02936 1.54322 1.14246 1.18816 1.12830 1.06609 1.11244 0.89715 1.25055 0.99472 0.94182 0.92502 1.70180 1.27694 1.08648 1.37629 0.86562 0.83769 0.81264 0.76759 1.19321 1.20400 1.21698 1.17745 0.87189 0.83991 0.81996 1.90614 1.13501 1.57719 1.81658 1.20165 0.95210 0.96131 0.97389 1.21481 0.94134 1.01184 0.96138 1.19820 1.00834 0.96007 0.94069 1.18772 0.93039 0.98540 0.93852 1.70598 1.28428 1.11655 1.16621 1.20419 0.85845 0.90996 0.86908 1.85792 1.46585 1.54144 1.34108 1.22753 0.85119 1.00819 0.91034 1.21850 1.03316 0.99385 0.96501 1.42229 1.22310 1.33647 1.22764 0.73527 1.18481 0.99520 0.94314 0.94188 1.19950 0.99664 0.97057 0.91420 0.92781 0.92953 0.93122 0.92144 0.90964 0.92286 0.89691 0.92447 0.82970 0.85289 0.90974 0.90948 0.91504 0.89733 0.91497 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.16 0.37 -1.52 16 2 C -0.14 -2.26 5.23 -26.73 -0.14 -2.40 16 3 C 0.07 1.43 4.90 -4.04 -0.02 1.41 16 4 N -0.43 -10.60 2.66 -116.04 -0.31 -10.90 16 5 C -0.37 -10.07 8.72 -15.01 -0.13 -10.20 16 6 H 0.09 2.22 7.25 -52.48 -0.38 1.83 16 7 C 0.10 2.87 3.59 -17.46 -0.06 2.81 16 8 N -0.81 -23.73 13.20 55.50 0.73 -23.00 16 9 Si 0.89 22.08 29.69 -169.99 -5.05 17.04 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.50 12.79 7.04 -12.53 -0.09 12.70 16 14 O -0.55 -16.21 14.93 5.24 0.08 -16.14 16 15 C -0.08 -1.73 5.46 -104.92 -0.57 -2.30 16 16 C -0.11 -1.88 7.28 -39.58 -0.29 -2.17 16 17 C -0.09 -1.37 10.03 -39.65 -0.40 -1.77 16 18 C 0.08 1.28 7.22 -84.60 -0.61 0.67 16 19 N -0.53 -8.48 10.59 -12.17 -0.13 -8.61 16 20 C 0.46 6.58 8.87 -88.90 -0.79 5.79 16 21 O -0.30 -3.55 10.18 -17.30 -0.18 -3.72 16 22 C 0.08 0.69 6.27 37.16 0.23 0.92 16 23 C -0.15 -0.90 10.28 37.16 0.38 -0.52 16 24 N -0.59 -8.20 6.27 -11.93 -0.07 -8.28 16 25 H 0.43 4.60 8.96 -40.82 -0.37 4.23 16 26 C 0.04 0.70 7.28 -83.88 -0.61 0.08 16 27 C -0.06 -1.13 9.61 -39.09 -0.38 -1.50 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.96 7.13 -51.93 -0.37 0.59 16 32 H 0.07 1.27 7.22 -51.93 -0.37 0.90 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.09 1.52 3.80 -51.98 -0.20 1.32 16 35 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 36 H 0.15 2.44 3.72 -52.49 -0.20 2.24 16 37 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.13 2.55 7.93 -52.49 -0.42 2.14 16 LS Contribution 356.22 15.07 5.37 5.37 Total: -1.00 -34.10 356.22 -8.32 -42.42 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.66 Total: 3.81 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -3.10 Total: 2.01 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.22 Total: -50.79 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.10 Total: -19.86 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.05 Total: 17.04 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.10 -8.32 -42.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346208931.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.437 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds