Wall clock time and date at job start Tue Mar 31 2020 11:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47347 * 2 1 4 4 N 1.46502 * 109.46775 * 179.97438 * 3 2 1 5 5 C 1.36893 * 120.00718 * 295.09562 * 4 3 2 6 6 H 1.08003 * 119.99323 * 42.62535 * 5 4 3 7 7 C 1.39012 * 120.00308 * 222.62549 * 5 4 3 8 8 N 1.31384 * 120.00282 * 40.03735 * 7 5 4 9 9 Si 1.86800 * 119.99998 * 220.03185 * 7 5 4 10 10 H 1.48503 * 109.47362 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47348 * 120.00198 * 9 7 5 12 12 H 1.48507 * 109.47358 * 240.00262 * 9 7 5 13 13 C 1.34784 * 119.99581 * 115.10338 * 4 3 2 14 14 O 1.21638 * 120.00054 * 175.91492 * 13 4 3 15 15 C 1.47395 * 119.99844 * 355.63295 * 13 4 3 16 16 C 1.40219 * 119.95745 * 329.22362 * 15 13 4 17 17 C 1.36177 * 120.48865 * 179.97438 * 16 15 13 18 18 C 1.40037 * 120.09809 * 0.02562 * 17 16 15 19 19 N 1.35553 * 133.26681 * 180.02562 * 18 17 16 20 20 C 1.30927 * 109.71880 * 180.02562 * 19 18 17 21 21 O 1.35201 * 125.01207 * 180.02562 * 20 19 18 22 22 C 1.42893 * 117.00193 * 359.97327 * 21 20 19 23 23 C 1.52999 * 109.47167 * 180.02562 * 22 21 20 24 24 N 1.36262 * 109.97412 * 359.97438 * 20 19 18 25 25 H 0.97001 * 126.40128 * 180.02562 * 24 20 19 26 26 C 1.38568 * 107.19899 * 0.02562 * 24 20 19 27 27 C 1.38195 * 133.88370 * 180.35412 * 26 24 20 28 28 H 1.09005 * 109.46580 * 300.00140 * 1 2 3 29 29 H 1.08997 * 109.47343 * 59.99236 * 1 2 3 30 30 H 1.08993 * 109.47794 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47002 * 239.99910 * 2 1 3 32 32 H 1.09005 * 109.47084 * 120.00163 * 2 1 3 33 33 H 1.09003 * 109.47034 * 60.00747 * 3 2 1 34 34 H 1.08992 * 109.47368 * 299.99947 * 3 2 1 35 35 H 0.96997 * 119.99937 * 184.97710 * 8 7 5 36 36 H 1.07999 * 119.75221 * 0.02562 * 16 15 13 37 37 H 1.08009 * 119.95387 * 180.02562 * 17 16 15 38 38 H 1.08998 * 109.47152 * 299.99949 * 22 21 20 39 39 H 1.08993 * 109.47860 * 60.00231 * 22 21 20 40 40 H 1.09001 * 109.47506 * 59.99684 * 23 22 21 41 41 H 1.09000 * 109.47418 * 180.02562 * 23 22 21 42 42 H 1.09005 * 109.47133 * 299.99681 * 23 22 21 43 43 H 1.07996 * 120.21545 * 359.92364 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.1891 0.9396 1.0745 6 1 3.8629 0.0218 1.5410 7 6 5.3037 1.6104 1.5646 8 7 5.3017 2.9223 1.6371 9 14 6.8043 0.6467 2.1203 10 1 6.5554 -0.8058 1.9375 11 1 7.9810 1.0525 1.3105 12 1 7.0698 0.9273 3.5543 13 6 4.1794 1.9373 -1.0562 14 8 5.3934 2.0058 -1.0252 15 6 3.4460 2.3899 -2.2520 16 6 2.2359 1.7760 -2.6053 17 6 1.5492 2.1859 -3.7075 18 6 2.0490 3.2272 -4.4993 19 7 1.6008 3.8363 -5.6243 20 6 2.4426 4.7717 -5.9855 21 8 2.2971 5.5713 -7.0659 22 6 1.1320 5.3714 -7.8687 23 6 1.1414 6.3599 -9.0364 24 7 3.4866 4.8213 -5.1111 25 1 4.2441 5.4257 -5.1528 26 6 3.2637 3.8471 -4.1513 27 6 3.9550 3.4323 -3.0288 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8901 34 1 1.6768 1.9563 -0.8899 35 1 6.1038 3.3941 1.9105 36 1 1.8452 0.9727 -1.9983 37 1 0.6177 1.7071 -3.9715 38 1 1.1279 4.3524 -8.2557 39 1 0.2407 5.5333 -7.2625 40 1 2.0326 6.1976 -9.6427 41 1 0.2525 6.2077 -9.6486 42 1 1.1457 7.3790 -8.6498 43 1 4.8846 3.9094 -2.7559 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346208931.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:49 Heat of formation + Delta-G solvation = 6.103129 kcal Electronic energy + Delta-G solvation = -26412.394225 eV Core-core repulsion = 22652.198813 eV Total energy + Delta-G solvation = -3760.195412 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.27823 -40.90785 -39.76426 -37.55917 -36.96184 -34.61723 -34.28202 -32.96322 -32.63181 -31.09977 -30.30062 -27.45879 -26.48756 -24.77294 -24.12929 -23.50695 -22.35664 -22.16163 -21.45682 -19.85253 -19.19958 -18.45071 -17.91050 -17.76304 -17.08212 -16.45064 -16.36416 -15.90241 -15.80667 -15.55649 -15.32273 -14.97521 -14.79806 -14.64012 -13.90282 -13.81936 -13.66227 -13.57447 -13.48011 -13.01472 -12.93889 -12.86667 -12.59564 -12.47756 -12.41004 -12.22032 -12.16047 -11.91230 -11.80416 -11.52194 -11.27872 -11.18901 -10.67481 -10.18061 -9.40608 -9.32415 -9.00628 -8.36137 -5.93967 -0.26320 0.34683 0.82236 1.34496 1.46019 1.52541 1.53247 2.22553 2.39179 2.56575 2.83444 3.10905 3.15271 3.23294 3.77334 3.93015 4.06655 4.06955 4.13309 4.21835 4.24768 4.31539 4.37828 4.43114 4.52604 4.64421 4.72330 4.83937 4.91083 4.94410 5.00005 5.06946 5.17283 5.23834 5.31703 5.32180 5.40651 5.43652 5.52680 5.55659 5.65278 5.76081 6.16600 6.37657 6.67496 6.94792 7.14048 7.60256 8.23000 8.67206 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018808 B = 0.003376 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.340730 B = 8292.647530 C = 9500.998757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.072 3.928 4 N -0.442 5.442 5 C -0.384 4.384 6 H 0.089 0.911 7 C 0.057 3.943 8 N -0.850 5.850 9 Si 0.943 3.057 10 H -0.258 1.258 11 H -0.297 1.297 12 H -0.274 1.274 13 C 0.493 3.507 14 O -0.606 6.606 15 C -0.112 4.112 16 C -0.103 4.103 17 C -0.072 4.072 18 C 0.074 3.926 19 N -0.544 5.544 20 C 0.475 3.525 21 O -0.299 6.299 22 C 0.068 3.932 23 C -0.147 4.147 24 N -0.580 5.580 25 H 0.439 0.561 26 C 0.034 3.966 27 C -0.062 4.062 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.106 0.894 35 H 0.263 0.737 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.108 0.892 42 H 0.067 0.933 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.891 3.656 -17.567 22.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C -0.050 4.050 4 N -0.160 5.160 5 C -0.509 4.509 6 H 0.106 0.894 7 C -0.153 4.153 8 N -0.484 5.484 9 Si 0.768 3.232 10 H -0.182 1.182 11 H -0.224 1.224 12 H -0.200 1.200 13 C 0.283 3.717 14 O -0.492 6.492 15 C -0.117 4.117 16 C -0.123 4.123 17 C -0.092 4.092 18 C -0.044 4.044 19 N -0.284 5.284 20 C 0.171 3.829 21 O -0.203 6.203 22 C -0.006 4.006 23 C -0.204 4.204 24 N -0.203 5.203 25 H 0.281 0.719 26 C -0.073 4.073 27 C -0.085 4.085 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.123 0.877 35 H 0.072 0.928 36 H 0.183 0.817 37 H 0.184 0.816 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.126 0.874 42 H 0.087 0.913 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.908 3.855 -17.966 22.456 hybrid contribution 2.448 0.536 1.022 2.706 sum -10.460 4.391 -16.944 20.391 Atomic orbital electron populations 1.21702 0.92896 1.02724 1.02653 1.21773 0.97453 0.95656 1.02001 1.22577 0.81380 0.98382 1.02692 1.43419 1.05093 1.53979 1.13509 1.19086 1.13606 1.06810 1.11431 0.89358 1.25809 1.01695 0.94815 0.92994 1.70231 1.27980 1.09937 1.40208 0.85741 0.80166 0.80528 0.76778 1.18175 1.22413 1.20014 1.18498 0.87017 0.82894 0.83283 1.90553 1.15923 1.59671 1.83017 1.19828 0.97088 0.98314 0.96494 1.21459 0.92784 1.01160 0.96945 1.20114 1.01460 0.95017 0.92575 1.19155 0.92704 0.98501 0.94082 1.70641 1.28945 1.12398 1.16385 1.20628 0.85040 0.90279 0.86909 1.85884 1.47920 1.53270 1.33216 1.23113 0.84077 1.01977 0.91440 1.21880 1.04548 0.98515 0.95412 1.42194 1.22878 1.33203 1.22055 0.71936 1.18308 0.99617 0.95238 0.94104 1.19776 0.99293 0.97107 0.92275 0.92729 0.90989 0.91187 0.91692 0.92872 0.93597 0.87652 0.92774 0.81723 0.81605 0.90847 0.90831 0.91334 0.87390 0.91345 0.86769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.91 71.98 0.71 -2.44 16 2 C -0.13 -4.07 5.23 30.59 0.16 -3.91 16 3 C 0.07 2.78 4.90 86.38 0.42 3.21 16 4 N -0.44 -22.45 2.66 -639.29 -1.70 -24.16 16 5 C -0.38 -21.48 8.72 84.09 0.73 -20.75 16 6 H 0.09 4.73 7.25 -2.91 -0.02 4.71 16 7 C 0.06 3.31 3.59 84.95 0.31 3.61 16 8 N -0.85 -52.01 13.20 21.67 0.29 -51.73 16 9 Si 0.94 46.85 29.69 68.60 2.04 48.88 16 10 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.30 -15.56 7.11 99.48 0.71 -14.85 16 12 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 13 C 0.49 26.03 7.04 86.65 0.61 26.64 16 14 O -0.61 -37.38 14.93 -4.15 -0.06 -37.45 16 15 C -0.11 -4.70 5.46 -20.05 -0.11 -4.81 16 16 C -0.10 -3.39 7.28 22.27 0.16 -3.22 16 17 C -0.07 -2.04 10.03 22.23 0.22 -1.82 16 18 C 0.07 2.32 7.22 39.62 0.29 2.61 16 19 N -0.54 -15.74 10.59 -306.21 -3.24 -18.98 16 20 C 0.48 12.40 8.87 179.75 1.59 13.99 16 21 O -0.30 -6.24 10.18 -84.81 -0.86 -7.11 16 22 C 0.07 1.02 6.27 71.98 0.45 1.47 16 23 C -0.15 -1.27 10.28 71.98 0.74 -0.53 16 24 N -0.58 -15.32 6.27 -302.67 -1.90 -17.22 16 25 H 0.44 8.95 8.96 -92.71 -0.83 8.12 16 26 C 0.03 1.13 7.28 38.68 0.28 1.41 16 27 C -0.06 -2.44 9.61 22.59 0.22 -2.22 16 28 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.96 7.13 -2.39 -0.02 1.95 16 32 H 0.05 1.85 7.22 -2.38 -0.02 1.83 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.11 3.64 3.80 -2.43 -0.01 3.64 16 35 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 36 H 0.17 4.91 3.72 -2.91 -0.01 4.90 16 37 H 0.17 3.49 8.06 -2.91 -0.02 3.47 16 38 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 41 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 43 H 0.11 4.74 7.93 -2.91 -0.02 4.72 16 Total: -1.00 -77.07 356.22 1.57 -75.51 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.22 Total: 19.01 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 6.79 Total: 13.24 kcal Atomic # 7 Polarization: -105.52 SS G_CDS: -6.56 Total: -112.08 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -0.93 Total: -44.55 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.04 Total: 48.88 kcal Total: -77.07 1.57 -75.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346208931.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.612 kcal (2) G-P(sol) polarization free energy of solvation -77.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds