Wall clock time and date at job start Tue Mar 31 2020 11:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46844 * 2 1 4 4 N 1.46495 * 109.46930 * 174.04076 * 3 2 1 5 5 C 1.36799 * 120.00208 * 82.10599 * 4 3 2 6 6 H 1.08006 * 119.99640 * 172.08587 * 5 4 3 7 7 C 1.39094 * 119.99884 * 352.08494 * 5 4 3 8 8 N 1.31329 * 120.00360 * 2.90711 * 7 5 4 9 9 Si 1.86806 * 119.99764 * 182.91080 * 7 5 4 10 10 H 1.48490 * 109.47322 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46922 * 120.00049 * 9 7 5 12 12 H 1.48505 * 109.46916 * 239.99629 * 9 7 5 13 13 C 1.34778 * 119.99836 * 262.10390 * 4 3 2 14 14 O 1.21562 * 120.00229 * 173.67931 * 13 4 3 15 15 C 1.48011 * 120.00120 * 353.68513 * 13 4 3 16 16 C 1.40073 * 120.89030 * 38.06878 * 15 13 4 17 17 C 1.37958 * 119.14452 * 179.72780 * 16 15 13 18 18 N 1.31913 * 120.99717 * 359.97438 * 17 16 15 19 19 C 1.32297 * 121.97807 * 0.02562 * 18 17 16 20 20 N 1.39428 * 119.63111 * 180.02562 * 19 18 17 21 21 C 1.34779 * 119.99882 * 5.45907 * 20 19 18 22 22 O 1.21279 * 119.99900 * 4.92507 * 21 20 19 23 23 C 1.50699 * 119.99989 * 184.92504 * 21 20 19 24 24 C 1.53005 * 117.49558 * 248.74864 * 23 21 20 25 25 C 1.52997 * 117.49926 * 180.08857 * 23 21 20 26 26 C 1.38973 * 120.73982 * 359.97438 * 19 18 17 27 27 H 1.08996 * 109.47577 * 300.00506 * 1 2 3 28 28 H 1.09005 * 109.47077 * 60.00624 * 1 2 3 29 29 H 1.09005 * 109.47081 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47418 * 240.00263 * 2 1 3 31 31 H 1.08996 * 109.47184 * 119.99591 * 2 1 3 32 32 H 1.08996 * 109.47239 * 54.03801 * 3 2 1 33 33 H 1.09006 * 109.46682 * 294.03817 * 3 2 1 34 34 H 0.97003 * 120.00106 * 180.02562 * 8 7 5 35 35 H 1.07997 * 120.42659 * 359.70358 * 16 15 13 36 36 H 1.07996 * 119.50158 * 180.02562 * 17 16 15 37 37 H 0.97003 * 119.99990 * 185.47129 * 20 19 18 38 38 H 1.08999 * 115.55357 * 34.41405 * 23 21 20 39 39 H 1.08996 * 117.50009 * 359.97438 * 24 23 21 40 40 H 1.08999 * 117.49932 * 145.01954 * 24 23 21 41 41 H 1.09002 * 117.50272 * 214.97903 * 25 23 21 42 42 H 1.09004 * 117.49894 * 359.97438 * 25 23 21 43 43 H 1.07999 * 120.53721 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.4979 1.4451 0.1434 5 6 4.2932 1.2430 -0.9511 6 1 5.3628 1.3710 -0.8724 7 6 3.7244 0.8728 -2.1653 8 7 2.4196 0.7727 -2.2759 9 14 4.8166 0.5178 -3.6386 10 1 6.2395 0.7010 -3.2556 11 1 4.6008 -0.8807 -4.0891 12 1 4.4775 1.4514 -4.7426 13 6 4.0556 1.6465 1.3537 14 8 5.2578 1.5349 1.4952 15 6 3.2043 2.0034 2.5107 16 6 1.9389 1.4263 2.6776 17 6 1.1779 1.7808 3.7724 18 7 1.6252 2.6503 4.6578 19 6 2.8133 3.2206 4.5415 20 7 3.2375 4.1330 5.5067 21 6 2.4886 4.3474 6.6066 22 8 1.4925 3.6834 6.8009 23 6 2.8890 5.4122 7.5950 24 6 3.3754 4.9520 8.9707 25 6 1.9989 5.6056 8.8243 26 6 3.6437 2.9196 3.4686 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.5921 1.9863 0.8318 33 1 1.7663 1.9246 -0.9386 34 1 2.0230 0.5142 -3.1225 35 1 1.5637 0.7134 1.9584 36 1 0.2016 1.3391 3.9070 37 1 4.0715 4.6135 5.3866 38 1 3.3557 6.2994 7.1670 39 1 3.4054 3.8793 9.1610 40 1 4.1618 5.5367 9.4480 41 1 1.8803 6.6200 9.2053 42 1 1.1235 4.9630 8.9180 43 1 4.6128 3.3874 3.3766 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350682082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:57 Heat of formation + Delta-G solvation = 39.994283 kcal Electronic energy + Delta-G solvation = -26429.236167 eV Core-core repulsion = 22670.510386 eV Total energy + Delta-G solvation = -3758.725781 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.73421 -39.59994 -38.22393 -36.32469 -35.63931 -34.75300 -32.74999 -31.79294 -31.38005 -29.83837 -26.17548 -25.52119 -24.83920 -23.42804 -22.72864 -22.42272 -20.79312 -20.45414 -19.35055 -18.03502 -17.36825 -17.01720 -16.13922 -15.95673 -15.50267 -15.21580 -14.79507 -14.67206 -14.24178 -14.16676 -13.93411 -13.69235 -13.45770 -13.17948 -12.79933 -12.72111 -12.16526 -11.85779 -11.83691 -11.60590 -11.33051 -11.10144 -10.91186 -10.88436 -10.75091 -10.57018 -10.48409 -10.37360 -10.20481 -10.09334 -9.95579 -9.24522 -9.04873 -8.90979 -8.47419 -8.02744 -7.80954 -6.34038 -3.96245 1.36982 1.42511 2.50838 2.81370 3.06045 3.16782 3.23427 3.58187 3.79263 3.96453 4.28835 4.33788 4.50003 4.60567 4.62979 4.81621 4.97478 5.05969 5.26919 5.31173 5.37017 5.46238 5.51768 5.61617 5.66863 5.85788 5.92922 5.97388 6.00012 6.12422 6.24523 6.35501 6.45463 6.60073 6.65302 6.82471 6.89516 6.99741 7.24043 7.27061 7.50245 7.69561 7.92487 8.08270 8.37573 8.44379 9.00803 9.24979 9.80715 10.47335 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025312 B = 0.003048 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.930628 B = 9183.128067 C =10032.778405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 C 0.103 3.897 4 N -0.420 5.420 5 C -0.289 4.289 6 H 0.107 0.893 7 C 0.024 3.976 8 N -0.865 5.865 9 Si 0.935 3.065 10 H -0.268 1.268 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.463 3.537 14 O -0.590 6.590 15 C -0.021 4.021 16 C -0.194 4.194 17 C 0.117 3.883 18 N -0.480 5.480 19 C 0.344 3.656 20 N -0.657 5.657 21 C 0.533 3.467 22 O -0.476 6.476 23 C -0.195 4.195 24 C -0.154 4.154 25 C -0.146 4.146 26 C -0.166 4.166 27 H 0.039 0.961 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.107 0.893 31 H 0.031 0.969 32 H 0.046 0.954 33 H 0.121 0.879 34 H 0.268 0.732 35 H 0.162 0.838 36 H 0.157 0.843 37 H 0.417 0.583 38 H 0.126 0.874 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.899 7.005 12.494 14.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.166 4.166 3 C -0.020 4.020 4 N -0.135 5.135 5 C -0.417 4.417 6 H 0.125 0.875 7 C -0.178 4.178 8 N -0.506 5.506 9 Si 0.761 3.239 10 H -0.192 1.192 11 H -0.205 1.205 12 H -0.206 1.206 13 C 0.252 3.748 14 O -0.477 6.477 15 C -0.033 4.033 16 C -0.216 4.216 17 C -0.040 4.040 18 N -0.195 5.195 19 C 0.114 3.886 20 N -0.304 5.304 21 C 0.318 3.682 22 O -0.345 6.345 23 C -0.216 4.216 24 C -0.191 4.191 25 C -0.184 4.184 26 C -0.191 4.191 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.125 0.875 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.139 0.861 34 H 0.079 0.921 35 H 0.179 0.821 36 H 0.174 0.826 37 H 0.253 0.747 38 H 0.143 0.857 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.127 0.873 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.703 6.689 13.267 15.312 hybrid contribution 1.324 -0.110 -1.615 2.091 sum -2.379 6.578 11.653 13.591 Atomic orbital electron populations 1.21652 0.97149 1.00178 1.00866 1.22133 0.93985 0.98249 1.02211 1.22308 0.79591 0.97290 1.02829 1.43768 1.06497 1.57477 1.05748 1.19946 0.92805 1.42310 0.86605 0.87504 1.25375 0.96433 0.96644 0.99386 1.70084 1.09003 1.45855 1.25693 0.85703 0.80018 0.78102 0.80036 1.19191 1.20487 1.20604 1.17695 0.87459 0.87136 0.82544 1.90612 1.14572 1.58679 1.83820 1.20433 0.93873 0.93880 0.95132 1.23163 0.94861 1.03369 1.00164 1.22492 0.99394 0.93117 0.88987 1.67360 1.12851 1.10265 1.29049 1.18194 0.90690 0.91446 0.88285 1.43426 1.25549 1.41622 1.19773 1.19826 0.83382 0.83841 0.81131 1.90796 1.24246 1.46010 1.73460 1.22208 1.08643 1.00549 0.90206 1.22979 0.98388 1.02141 0.95587 1.22976 0.95120 1.02718 0.97551 1.21419 1.00947 1.01746 0.94947 0.94229 0.92504 0.93968 0.87515 0.95062 0.93649 0.86117 0.92096 0.82111 0.82577 0.74691 0.85658 0.88156 0.87687 0.87846 0.87285 0.84432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.79 37.16 0.36 -1.91 16 2 C -0.13 -2.54 4.59 -26.73 -0.12 -2.67 16 3 C 0.10 2.21 4.16 -4.04 -0.02 2.20 16 4 N -0.42 -10.40 2.64 -115.83 -0.31 -10.71 16 5 C -0.29 -7.58 9.48 -15.02 -0.14 -7.72 16 6 H 0.11 2.97 7.22 -52.48 -0.38 2.59 16 7 C 0.02 0.57 5.28 -17.45 -0.09 0.48 16 8 N -0.87 -20.25 7.12 55.50 0.40 -19.86 16 9 Si 0.93 19.48 29.56 -169.99 -5.02 14.46 16 10 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 11 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 12 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 13 C 0.46 11.43 7.36 -12.25 -0.09 11.34 16 14 O -0.59 -16.39 16.55 5.31 0.09 -16.30 16 15 C -0.02 -0.44 5.36 -104.68 -0.56 -1.00 16 16 C -0.19 -3.55 7.49 -39.00 -0.29 -3.85 16 17 C 0.12 1.98 11.16 -17.62 -0.20 1.79 16 18 N -0.48 -8.86 7.89 -12.42 -0.10 -8.96 16 19 C 0.34 5.89 7.41 -154.75 -1.15 4.75 16 20 N -0.66 -8.75 5.39 -11.45 -0.06 -8.82 16 21 C 0.53 7.29 7.56 -10.98 -0.08 7.21 16 22 O -0.48 -8.45 14.55 5.56 0.08 -8.37 16 23 C -0.19 -1.77 6.19 -91.77 -0.57 -2.34 16 24 C -0.15 -1.18 10.24 -26.69 -0.27 -1.45 16 25 C -0.15 -1.22 10.05 -26.69 -0.27 -1.49 16 26 C -0.17 -3.03 9.58 -38.78 -0.37 -3.40 16 27 H 0.04 0.57 7.74 -51.93 -0.40 0.17 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.11 2.41 5.74 -51.93 -0.30 2.12 16 31 H 0.03 0.62 6.75 -51.93 -0.35 0.27 16 32 H 0.05 0.91 4.61 -51.93 -0.24 0.67 16 33 H 0.12 2.82 5.85 -51.93 -0.30 2.52 16 34 H 0.27 5.95 8.31 -40.82 -0.34 5.61 16 35 H 0.16 2.89 2.73 -52.49 -0.14 2.75 16 36 H 0.16 2.16 8.06 -52.49 -0.42 1.74 16 37 H 0.42 3.95 8.70 -40.82 -0.36 3.59 16 38 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.11 1.10 7.67 -51.93 -0.40 0.70 16 43 H 0.14 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 351.00 15.07 5.29 5.29 Total: -1.00 -31.97 351.00 -8.88 -40.85 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -5.39 Total: 10.49 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -3.86 Total: 1.93 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: -0.07 Total: -48.34 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: 0.17 Total: -24.68 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.97 -8.88 -40.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350682082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.843 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds