Wall clock time and date at job start Tue Mar 31 2020 11:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46844 * 2 1 4 4 N 1.46495 * 109.46930 * 174.04076 * 3 2 1 5 5 C 1.36799 * 120.00208 * 82.10599 * 4 3 2 6 6 H 1.08006 * 119.99640 * 172.08587 * 5 4 3 7 7 C 1.39094 * 119.99884 * 352.08494 * 5 4 3 8 8 N 1.31329 * 120.00360 * 2.90711 * 7 5 4 9 9 Si 1.86806 * 119.99764 * 182.91080 * 7 5 4 10 10 H 1.48490 * 109.47322 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46922 * 120.00049 * 9 7 5 12 12 H 1.48505 * 109.46916 * 239.99629 * 9 7 5 13 13 C 1.34778 * 119.99836 * 262.10390 * 4 3 2 14 14 O 1.21562 * 120.00229 * 173.67931 * 13 4 3 15 15 C 1.48011 * 120.00120 * 353.68513 * 13 4 3 16 16 C 1.40073 * 120.89030 * 38.06878 * 15 13 4 17 17 C 1.37958 * 119.14452 * 179.72780 * 16 15 13 18 18 N 1.31913 * 120.99717 * 359.97438 * 17 16 15 19 19 C 1.32297 * 121.97807 * 0.02562 * 18 17 16 20 20 N 1.39428 * 119.63111 * 180.02562 * 19 18 17 21 21 C 1.34779 * 119.99882 * 5.45907 * 20 19 18 22 22 O 1.21279 * 119.99900 * 4.92507 * 21 20 19 23 23 C 1.50699 * 119.99989 * 184.92504 * 21 20 19 24 24 C 1.53005 * 117.49558 * 248.74864 * 23 21 20 25 25 C 1.52997 * 117.49926 * 180.08857 * 23 21 20 26 26 C 1.38973 * 120.73982 * 359.97438 * 19 18 17 27 27 H 1.08996 * 109.47577 * 300.00506 * 1 2 3 28 28 H 1.09005 * 109.47077 * 60.00624 * 1 2 3 29 29 H 1.09005 * 109.47081 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47418 * 240.00263 * 2 1 3 31 31 H 1.08996 * 109.47184 * 119.99591 * 2 1 3 32 32 H 1.08996 * 109.47239 * 54.03801 * 3 2 1 33 33 H 1.09006 * 109.46682 * 294.03817 * 3 2 1 34 34 H 0.97003 * 120.00106 * 180.02562 * 8 7 5 35 35 H 1.07997 * 120.42659 * 359.70358 * 16 15 13 36 36 H 1.07996 * 119.50158 * 180.02562 * 17 16 15 37 37 H 0.97003 * 119.99990 * 185.47129 * 20 19 18 38 38 H 1.08999 * 115.55357 * 34.41405 * 23 21 20 39 39 H 1.08996 * 117.50009 * 359.97438 * 24 23 21 40 40 H 1.08999 * 117.49932 * 145.01954 * 24 23 21 41 41 H 1.09002 * 117.50272 * 214.97903 * 25 23 21 42 42 H 1.09004 * 117.49894 * 359.97438 * 25 23 21 43 43 H 1.07999 * 120.53721 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.4979 1.4451 0.1434 5 6 4.2932 1.2430 -0.9511 6 1 5.3628 1.3710 -0.8724 7 6 3.7244 0.8728 -2.1653 8 7 2.4196 0.7727 -2.2759 9 14 4.8166 0.5178 -3.6386 10 1 6.2395 0.7010 -3.2556 11 1 4.6008 -0.8807 -4.0891 12 1 4.4775 1.4514 -4.7426 13 6 4.0556 1.6465 1.3537 14 8 5.2578 1.5349 1.4952 15 6 3.2043 2.0034 2.5107 16 6 1.9389 1.4263 2.6776 17 6 1.1779 1.7808 3.7724 18 7 1.6252 2.6503 4.6578 19 6 2.8133 3.2206 4.5415 20 7 3.2375 4.1330 5.5067 21 6 2.4886 4.3474 6.6066 22 8 1.4925 3.6834 6.8009 23 6 2.8890 5.4122 7.5950 24 6 3.3754 4.9520 8.9707 25 6 1.9989 5.6056 8.8243 26 6 3.6437 2.9196 3.4686 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.5921 1.9863 0.8318 33 1 1.7663 1.9246 -0.9386 34 1 2.0230 0.5142 -3.1225 35 1 1.5637 0.7134 1.9584 36 1 0.2016 1.3391 3.9070 37 1 4.0715 4.6135 5.3866 38 1 3.3557 6.2994 7.1670 39 1 3.4054 3.8793 9.1610 40 1 4.1618 5.5367 9.4480 41 1 1.8803 6.6200 9.2053 42 1 1.1235 4.9630 8.9180 43 1 4.6128 3.3874 3.3766 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350682082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:57 Heat of formation + Delta-G solvation = 20.965819 kcal Electronic energy + Delta-G solvation = -26430.061303 eV Core-core repulsion = 22670.510386 eV Total energy + Delta-G solvation = -3759.550917 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.06473 -40.98911 -39.75943 -37.50980 -37.16176 -35.99495 -34.42166 -33.44985 -33.08955 -31.19087 -27.93191 -26.93480 -26.13868 -24.97285 -23.78623 -23.29412 -22.36732 -21.77361 -20.73210 -19.37228 -18.88841 -18.47485 -17.73228 -17.44891 -16.72117 -16.49715 -16.31071 -15.96979 -15.78912 -15.41119 -15.38671 -15.35106 -14.93538 -14.55026 -14.36277 -13.82270 -13.58042 -13.56153 -13.18939 -12.87634 -12.77615 -12.43423 -12.40693 -12.28399 -12.11322 -11.94994 -11.80235 -11.57608 -11.54709 -11.47954 -11.26146 -10.88232 -10.76818 -10.56561 -10.11368 -9.73950 -9.29386 -8.20685 -5.93627 -0.11019 0.01500 1.35180 1.43237 1.47469 1.55165 1.72900 2.02577 2.23021 2.78314 2.89840 2.96371 3.10269 3.29277 3.68803 3.77429 3.86201 3.92846 3.98268 4.05885 4.19276 4.27176 4.39202 4.56034 4.59342 4.66635 4.71895 4.76357 4.90342 4.93134 5.03834 5.11479 5.13379 5.19906 5.24812 5.29540 5.35054 5.48696 5.65635 5.68098 5.96856 6.04287 6.16983 6.48303 6.88059 7.08332 7.24121 7.36084 7.91042 8.57676 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025312 B = 0.003048 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.930628 B = 9183.128067 C =10032.778405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.120 4.120 3 C 0.107 3.893 4 N -0.426 5.426 5 C -0.337 4.337 6 H 0.077 0.923 7 C 0.003 3.997 8 N -0.859 5.859 9 Si 0.994 3.006 10 H -0.280 1.280 11 H -0.270 1.270 12 H -0.267 1.267 13 C 0.448 3.552 14 O -0.637 6.637 15 C -0.042 4.042 16 C -0.194 4.194 17 C 0.127 3.873 18 N -0.497 5.497 19 C 0.349 3.651 20 N -0.646 5.646 21 C 0.528 3.472 22 O -0.521 6.521 23 C -0.198 4.198 24 C -0.141 4.141 25 C -0.148 4.148 26 C -0.168 4.168 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.027 0.973 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.276 0.724 35 H 0.164 0.836 36 H 0.192 0.808 37 H 0.434 0.566 38 H 0.158 0.842 39 H 0.084 0.916 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.085 0.915 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.133 7.990 13.456 16.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.158 4.158 3 C -0.015 4.015 4 N -0.140 5.140 5 C -0.465 4.465 6 H 0.095 0.905 7 C -0.200 4.200 8 N -0.498 5.498 9 Si 0.818 3.182 10 H -0.205 1.205 11 H -0.195 1.195 12 H -0.192 1.192 13 C 0.239 3.761 14 O -0.527 6.527 15 C -0.054 4.054 16 C -0.216 4.216 17 C -0.029 4.029 18 N -0.213 5.213 19 C 0.118 3.882 20 N -0.294 5.294 21 C 0.316 3.684 22 O -0.394 6.394 23 C -0.219 4.219 24 C -0.178 4.178 25 C -0.185 4.185 26 C -0.193 4.193 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.087 0.913 35 H 0.182 0.818 36 H 0.209 0.791 37 H 0.274 0.726 38 H 0.176 0.824 39 H 0.103 0.897 40 H 0.155 0.845 41 H 0.150 0.850 42 H 0.103 0.897 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.965 7.702 14.228 16.924 hybrid contribution 1.658 -0.409 -1.863 2.527 sum -3.308 7.293 12.365 14.732 Atomic orbital electron populations 1.21579 0.93881 1.01681 1.01818 1.21965 0.96722 0.96503 1.00590 1.22354 0.78024 0.98544 1.02529 1.43977 1.07638 1.56889 1.05530 1.19806 0.92083 1.46263 0.88346 0.90512 1.25998 0.97830 0.95461 1.00709 1.70175 1.09345 1.43745 1.26505 0.84858 0.77763 0.78414 0.77196 1.20519 1.19499 1.19242 1.18318 0.87487 0.86808 0.83534 1.90549 1.16641 1.60744 1.84793 1.20224 0.94697 0.95908 0.94571 1.23139 0.94069 1.03402 1.00960 1.23001 1.00231 0.92047 0.87653 1.67515 1.13403 1.10837 1.29513 1.18350 0.90045 0.91391 0.88451 1.43510 1.26296 1.40669 1.18974 1.20709 0.82488 0.84001 0.81220 1.90770 1.26222 1.47915 1.74459 1.22275 1.09900 1.00100 0.89616 1.23093 0.98874 1.01780 0.94050 1.23064 0.94585 1.03884 0.96999 1.21466 1.01435 1.01492 0.94864 0.92014 0.92789 0.92212 0.90321 0.95417 0.91895 0.87883 0.91305 0.81845 0.79118 0.72578 0.82407 0.89706 0.84541 0.85041 0.89679 0.83770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 9.79 71.98 0.70 -3.27 16 2 C -0.12 -4.73 4.59 30.60 0.14 -4.59 16 3 C 0.11 4.68 4.16 86.38 0.36 5.04 16 4 N -0.43 -21.99 2.64 -638.65 -1.68 -23.68 16 5 C -0.34 -18.57 9.48 84.12 0.80 -17.77 16 6 H 0.08 4.59 7.22 -2.91 -0.02 4.56 16 7 C 0.00 0.15 5.28 84.97 0.45 0.59 16 8 N -0.86 -40.19 7.12 21.69 0.15 -40.04 16 9 Si 0.99 40.29 29.56 68.60 2.03 42.32 16 10 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 11 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 12 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 13 C 0.45 23.18 7.36 86.84 0.64 23.81 16 14 O -0.64 -37.51 16.55 -3.91 -0.06 -37.57 16 15 C -0.04 -1.79 5.36 -19.90 -0.11 -1.89 16 16 C -0.19 -6.99 7.49 22.65 0.17 -6.82 16 17 C 0.13 4.10 11.16 84.61 0.94 5.05 16 18 N -0.50 -17.76 7.89 -193.21 -1.53 -19.28 16 19 C 0.35 11.67 7.41 132.91 0.98 12.66 16 20 N -0.65 -16.34 5.39 -308.51 -1.66 -18.00 16 21 C 0.53 13.71 7.56 87.66 0.66 14.37 16 22 O -0.52 -18.22 14.55 -3.03 -0.04 -18.26 16 23 C -0.20 -3.07 6.19 -11.54 -0.07 -3.14 16 24 C -0.14 -1.76 10.24 30.62 0.31 -1.45 16 25 C -0.15 -2.11 10.05 30.62 0.31 -1.80 16 26 C -0.17 -6.17 9.58 22.79 0.22 -5.95 16 27 H 0.06 1.59 7.74 -2.39 -0.02 1.58 16 28 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.08 3.57 5.74 -2.39 -0.01 3.56 16 31 H 0.03 1.10 6.75 -2.39 -0.02 1.08 16 32 H 0.06 2.51 4.61 -2.39 -0.01 2.49 16 33 H 0.10 4.86 5.85 -2.38 -0.01 4.85 16 34 H 0.28 11.99 8.31 -92.71 -0.77 11.22 16 35 H 0.16 5.73 2.73 -2.91 -0.01 5.73 16 36 H 0.19 4.69 8.06 -2.91 -0.02 4.66 16 37 H 0.43 7.47 8.70 -92.71 -0.81 6.66 16 38 H 0.16 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.08 1.65 7.67 -2.39 -0.02 1.64 16 43 H 0.14 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -73.31 351.00 3.98 -69.34 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 0.26 Total: 30.34 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 6.51 Total: 14.84 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -4.72 Total: -101.00 kcal Atomic # 8 Polarization: -55.72 SS G_CDS: -0.11 Total: -55.83 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -73.31 3.98 -69.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350682082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.302 kcal (2) G-P(sol) polarization free energy of solvation -73.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds