Wall clock time and date at job start Tue Mar 31 2020 12:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.90480 * 2 1 4 4 N 1.47196 * 109.91526 * 121.09673 * 2 1 3 5 5 S 1.65603 * 125.65789 * 300.89207 * 4 2 1 6 6 O 1.42095 * 104.27784 * 26.06798 * 5 4 2 7 7 O 1.42104 * 104.27976 * 153.92980 * 5 4 2 8 8 C 1.81407 * 104.44530 * 269.99647 * 5 4 2 9 9 C 1.53007 * 109.47051 * 180.02562 * 8 5 4 10 10 C 1.50697 * 109.47015 * 180.02562 * 9 8 5 11 11 H 1.08001 * 120.00281 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99746 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00124 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99699 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47544 * 59.99963 * 14 12 10 16 16 H 1.48505 * 109.47019 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47386 * 299.99449 * 14 12 10 18 18 C 1.47495 * 108.68052 * 120.90866 * 4 2 1 19 19 C 1.55026 * 104.90801 * 335.98197 * 18 4 2 20 20 C 1.53658 * 109.87242 * 238.70534 * 2 1 3 21 21 C 1.52336 * 110.82554 * 20.38544 * 20 2 1 22 22 C 1.53240 * 109.22881 * 178.54115 * 21 20 2 23 23 O 1.42912 * 109.31129 * 303.63614 * 22 21 20 24 24 C 1.42925 * 114.25146 * 61.73712 * 23 22 21 25 25 C 1.52354 * 110.75489 * 143.81518 * 20 2 1 26 26 H 1.09003 * 109.46879 * 300.36050 * 1 2 3 27 27 H 1.09001 * 109.47245 * 60.35883 * 1 2 3 28 28 H 1.08996 * 109.47087 * 180.36107 * 1 2 3 29 29 H 1.09000 * 109.47155 * 299.99830 * 8 5 4 30 30 H 1.09000 * 109.46854 * 60.00042 * 8 5 4 31 31 H 1.09001 * 109.46726 * 300.00388 * 9 8 5 32 32 H 1.08997 * 109.46865 * 59.99664 * 9 8 5 33 33 H 0.96998 * 120.00129 * 180.02562 * 13 12 10 34 34 H 1.09001 * 110.35054 * 217.12456 * 18 4 2 35 35 H 1.08993 * 110.44243 * 94.89042 * 18 4 2 36 36 H 1.09002 * 111.01765 * 154.37648 * 19 18 4 37 37 H 1.09000 * 111.02082 * 278.22293 * 19 18 4 38 38 H 1.09005 * 109.50711 * 298.46558 * 21 20 2 39 39 H 1.08998 * 109.51137 * 58.61249 * 21 20 2 40 40 H 1.09000 * 109.50152 * 183.68484 * 22 21 20 41 41 H 1.09004 * 109.52653 * 63.60305 * 22 21 20 42 42 H 1.09000 * 109.49449 * 178.31048 * 24 23 22 43 43 H 1.08999 * 109.52678 * 58.22486 * 24 23 22 44 44 H 1.09004 * 109.51007 * 301.33932 * 25 20 2 45 45 H 1.08996 * 109.51318 * 61.43843 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 7 2.0314 -0.7148 1.1851 5 16 1.7107 -0.3164 2.7601 6 8 0.4642 0.3633 2.7029 7 8 1.8450 -1.5423 3.4661 8 6 3.0405 0.8300 3.2167 9 6 2.8539 1.2753 4.6686 10 6 3.9582 2.2281 5.0477 11 1 4.7175 2.4895 4.3255 12 6 3.9998 2.7652 6.3168 13 7 3.0755 2.4465 7.1963 14 14 5.3691 3.9457 6.7869 15 1 5.3267 5.1330 5.8961 16 1 5.1878 4.3780 8.1960 17 1 6.6809 3.2649 6.6424 18 6 2.8671 -1.8445 0.7369 19 6 2.3714 -2.1631 -0.6970 20 6 2.0523 -0.7506 -1.2348 21 6 0.9813 -0.8271 -2.3154 22 6 1.5514 -1.5490 -3.5409 23 8 2.7302 -0.8721 -3.9822 24 6 3.7871 -0.8462 -3.0205 25 6 3.3173 -0.0926 -1.7716 26 1 -0.3633 0.5194 0.8868 27 1 -0.3634 0.5083 -0.8932 28 1 -0.3633 -1.0276 0.0065 29 1 4.0033 0.3300 3.1114 30 1 3.0099 1.7011 2.5622 31 1 1.8909 1.7751 4.7743 32 1 2.8847 0.4040 5.3227 33 1 3.1045 2.8247 8.0891 34 1 2.7213 -2.7059 1.3886 35 1 3.9183 -1.5569 0.7194 36 1 3.1565 -2.6375 -1.2857 37 1 1.4755 -2.7835 -0.6721 38 1 0.1204 -1.3778 -1.9362 39 1 0.6749 0.1806 -2.5962 40 1 0.8107 -1.5486 -4.3407 41 1 1.7997 -2.5767 -3.2756 42 1 4.6538 -0.3405 -3.4460 43 1 4.0580 -1.8666 -2.7492 44 1 3.1062 0.9450 -2.0304 45 1 4.0965 -0.1266 -1.0103 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371995434.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:49 Heat of formation + Delta-G solvation = -127.088728 kcal Electronic energy + Delta-G solvation = -26229.436981 eV Core-core repulsion = 22566.617137 eV Total energy + Delta-G solvation = -3662.819844 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.88621 -37.82213 -36.65212 -35.45095 -33.90433 -33.29642 -31.99792 -31.16962 -30.88756 -28.27855 -25.60370 -25.47381 -23.83112 -23.06358 -21.97480 -21.28764 -18.78041 -18.45355 -17.52698 -16.74242 -16.30854 -16.29453 -15.94384 -15.51456 -15.16303 -15.07741 -14.58900 -14.45439 -13.92379 -13.63600 -13.45760 -13.27699 -13.16555 -12.58138 -12.50165 -12.45022 -12.18195 -11.84523 -11.76843 -11.58986 -11.54611 -11.49135 -11.14898 -11.12280 -11.07881 -10.97257 -10.63302 -10.52286 -10.43974 -10.38694 -10.34107 -9.78609 -9.65906 -9.33666 -8.76533 -8.51506 -6.13666 -4.19502 0.72607 3.02548 3.26116 3.30942 3.32748 3.61421 4.07594 4.25107 4.26395 4.34781 4.42373 4.64666 4.73156 4.80347 4.87526 4.94275 5.09068 5.13995 5.21278 5.24450 5.30166 5.37326 5.39991 5.43611 5.46070 5.58193 5.64104 5.68511 5.70938 5.73942 5.78760 5.83848 5.95450 6.01270 6.11945 6.25909 6.47246 6.55482 6.57214 6.92944 7.27872 7.34164 7.78941 8.16091 8.83573 9.45254 10.97353 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021410 B = 0.003445 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.457243 B = 8125.019694 C = 8747.421774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.163 3.837 3 H 0.074 0.926 4 N -1.014 6.014 5 S 2.605 3.395 6 O -0.958 6.958 7 O -0.963 6.963 8 C -0.589 4.589 9 C 0.029 3.971 10 C -0.521 4.521 11 H 0.061 0.939 12 C 0.058 3.942 13 N -0.891 5.891 14 Si 0.900 3.100 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.275 1.275 18 C 0.117 3.883 19 C -0.123 4.123 20 C -0.065 4.065 21 C -0.141 4.141 22 C 0.061 3.939 23 O -0.385 6.385 24 C 0.061 3.939 25 C -0.144 4.144 26 H 0.095 0.905 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.033 0.967 32 H 0.033 0.967 33 H 0.266 0.734 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.093 0.907 43 H 0.052 0.948 44 H 0.076 0.924 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.140 -8.550 -21.759 23.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.057 3.943 3 H 0.092 0.908 4 N -0.850 5.850 5 S 2.705 3.295 6 O -0.949 6.949 7 O -0.954 6.954 8 C -0.723 4.723 9 C -0.010 4.010 10 C -0.561 4.561 11 H 0.079 0.921 12 C -0.145 4.145 13 N -0.529 5.529 14 Si 0.728 3.272 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.201 1.201 18 C -0.009 4.009 19 C -0.162 4.162 20 C -0.066 4.066 21 C -0.179 4.179 22 C -0.016 4.016 23 O -0.303 6.303 24 C -0.015 4.015 25 C -0.182 4.182 26 H 0.114 0.886 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.069 0.931 42 H 0.111 0.889 43 H 0.070 0.930 44 H 0.094 0.906 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.956 -8.773 -21.159 22.989 hybrid contribution 1.327 0.908 0.523 1.691 sum -0.628 -7.865 -20.636 22.093 Atomic orbital electron populations 1.22653 0.94621 1.02842 1.04414 1.21169 0.94482 0.95139 0.83552 0.90790 1.58993 1.64123 1.39861 1.22038 1.05305 0.77058 0.75864 0.71281 1.93484 1.39936 1.76774 1.84666 1.93529 1.87758 1.43191 1.70930 1.30497 1.16534 1.14469 1.10777 1.18956 0.99409 0.97967 0.84705 1.20959 1.10522 1.26897 0.97680 0.92124 1.25067 0.96295 0.96715 0.96380 1.69942 1.33731 1.43804 1.05376 0.86524 0.82018 0.81087 0.77608 1.20062 1.21039 1.20066 1.21984 0.94126 0.89247 0.95531 1.22875 1.01853 0.96005 0.95434 1.21090 0.95524 0.95722 0.94271 1.22209 0.98194 1.02431 0.95047 1.22646 0.87320 0.94936 0.96713 1.87915 1.24160 1.77747 1.40519 1.22648 0.89998 0.99642 0.89248 1.22131 0.97413 1.00512 0.98115 0.88604 0.91669 0.92439 0.86399 0.86356 0.94856 0.94923 0.92446 0.89884 0.91711 0.90147 0.90420 0.90005 0.90526 0.88990 0.93144 0.88877 0.92983 0.90562 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.25 7.80 37.16 0.29 -1.96 16 2 C 0.16 1.90 3.23 -67.21 -0.22 1.68 16 3 H 0.07 0.84 7.84 -51.93 -0.41 0.43 16 4 N -1.01 -13.80 3.35 -104.55 -0.35 -14.15 16 5 S 2.60 47.29 5.64 -107.50 -0.61 46.68 16 6 O -0.96 -19.39 14.86 -57.54 -0.85 -20.25 16 7 O -0.96 -20.19 17.28 -57.54 -0.99 -21.19 16 8 C -0.59 -11.42 6.12 37.16 0.23 -11.19 16 9 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 10 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 11 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 14 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 C 0.12 1.29 6.76 -2.43 -0.02 1.27 16 19 C -0.12 -1.06 5.08 -24.89 -0.13 -1.19 16 20 C -0.06 -0.58 0.49 -154.07 -0.07 -0.65 16 21 C -0.14 -1.11 3.63 -26.95 -0.10 -1.21 16 22 C 0.06 0.45 6.66 37.28 0.25 0.70 16 23 O -0.38 -3.60 10.75 -35.23 -0.38 -3.98 16 24 C 0.06 0.47 6.65 37.28 0.25 0.72 16 25 C -0.14 -1.19 4.78 -26.94 -0.13 -1.32 16 26 H 0.10 1.44 5.54 -51.93 -0.29 1.15 16 27 H 0.06 0.63 6.67 -51.93 -0.35 0.29 16 28 H 0.06 0.67 7.49 -51.93 -0.39 0.28 16 29 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 30 H 0.12 2.08 8.14 -51.92 -0.42 1.65 16 31 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.08 0.97 7.67 -51.93 -0.40 0.58 16 35 H 0.06 0.62 7.71 -51.93 -0.40 0.22 16 36 H 0.08 0.55 6.29 -51.93 -0.33 0.23 16 37 H 0.08 0.66 7.95 -51.93 -0.41 0.25 16 38 H 0.08 0.61 6.63 -51.93 -0.34 0.26 16 39 H 0.08 0.62 7.47 -51.93 -0.39 0.23 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.34 7.59 -51.93 -0.39 -0.06 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.35 6.54 -51.93 -0.34 0.01 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.65 7.41 -51.93 -0.39 0.27 16 LS Contribution 352.62 15.07 5.31 5.31 Total: -1.00 -34.16 352.62 -9.67 -43.84 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -7.32 Total: -0.86 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: -0.20 Total: -25.80 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.39 Total: -39.96 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -2.23 Total: -45.41 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 47.29 SS G_CDS: -0.61 Total: 46.68 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.16 -9.67 -43.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371995434.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.251 kcal (2) G-P(sol) polarization free energy of solvation -34.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds