Wall clock time and date at job start Tue Mar 31 2020 12:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.90480 * 2 1 4 4 N 1.47196 * 109.91526 * 121.09673 * 2 1 3 5 5 S 1.65603 * 125.65789 * 300.89207 * 4 2 1 6 6 O 1.42095 * 104.27784 * 26.06798 * 5 4 2 7 7 O 1.42104 * 104.27976 * 153.92980 * 5 4 2 8 8 C 1.81407 * 104.44530 * 269.99647 * 5 4 2 9 9 C 1.53007 * 109.47051 * 180.02562 * 8 5 4 10 10 C 1.50697 * 109.47015 * 180.02562 * 9 8 5 11 11 H 1.08001 * 120.00281 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99746 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00124 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99699 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47544 * 59.99963 * 14 12 10 16 16 H 1.48505 * 109.47019 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47386 * 299.99449 * 14 12 10 18 18 C 1.47495 * 108.68052 * 120.90866 * 4 2 1 19 19 C 1.55026 * 104.90801 * 335.98197 * 18 4 2 20 20 C 1.53658 * 109.87242 * 238.70534 * 2 1 3 21 21 C 1.52336 * 110.82554 * 20.38544 * 20 2 1 22 22 C 1.53240 * 109.22881 * 178.54115 * 21 20 2 23 23 O 1.42912 * 109.31129 * 303.63614 * 22 21 20 24 24 C 1.42925 * 114.25146 * 61.73712 * 23 22 21 25 25 C 1.52354 * 110.75489 * 143.81518 * 20 2 1 26 26 H 1.09003 * 109.46879 * 300.36050 * 1 2 3 27 27 H 1.09001 * 109.47245 * 60.35883 * 1 2 3 28 28 H 1.08996 * 109.47087 * 180.36107 * 1 2 3 29 29 H 1.09000 * 109.47155 * 299.99830 * 8 5 4 30 30 H 1.09000 * 109.46854 * 60.00042 * 8 5 4 31 31 H 1.09001 * 109.46726 * 300.00388 * 9 8 5 32 32 H 1.08997 * 109.46865 * 59.99664 * 9 8 5 33 33 H 0.96998 * 120.00129 * 180.02562 * 13 12 10 34 34 H 1.09001 * 110.35054 * 217.12456 * 18 4 2 35 35 H 1.08993 * 110.44243 * 94.89042 * 18 4 2 36 36 H 1.09002 * 111.01765 * 154.37648 * 19 18 4 37 37 H 1.09000 * 111.02082 * 278.22293 * 19 18 4 38 38 H 1.09005 * 109.50711 * 298.46558 * 21 20 2 39 39 H 1.08998 * 109.51137 * 58.61249 * 21 20 2 40 40 H 1.09000 * 109.50152 * 183.68484 * 22 21 20 41 41 H 1.09004 * 109.52653 * 63.60305 * 22 21 20 42 42 H 1.09000 * 109.49449 * 178.31048 * 24 23 22 43 43 H 1.08999 * 109.52678 * 58.22486 * 24 23 22 44 44 H 1.09004 * 109.51007 * 301.33932 * 25 20 2 45 45 H 1.08996 * 109.51318 * 61.43843 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 7 2.0314 -0.7148 1.1851 5 16 1.7107 -0.3164 2.7601 6 8 0.4642 0.3633 2.7029 7 8 1.8450 -1.5423 3.4661 8 6 3.0405 0.8300 3.2167 9 6 2.8539 1.2753 4.6686 10 6 3.9582 2.2281 5.0477 11 1 4.7175 2.4895 4.3255 12 6 3.9998 2.7652 6.3168 13 7 3.0755 2.4465 7.1963 14 14 5.3691 3.9457 6.7869 15 1 5.3267 5.1330 5.8961 16 1 5.1878 4.3780 8.1960 17 1 6.6809 3.2649 6.6424 18 6 2.8671 -1.8445 0.7369 19 6 2.3714 -2.1631 -0.6970 20 6 2.0523 -0.7506 -1.2348 21 6 0.9813 -0.8271 -2.3154 22 6 1.5514 -1.5490 -3.5409 23 8 2.7302 -0.8721 -3.9822 24 6 3.7871 -0.8462 -3.0205 25 6 3.3173 -0.0926 -1.7716 26 1 -0.3633 0.5194 0.8868 27 1 -0.3634 0.5083 -0.8932 28 1 -0.3633 -1.0276 0.0065 29 1 4.0033 0.3300 3.1114 30 1 3.0099 1.7011 2.5622 31 1 1.8909 1.7751 4.7743 32 1 2.8847 0.4040 5.3227 33 1 3.1045 2.8247 8.0891 34 1 2.7213 -2.7059 1.3886 35 1 3.9183 -1.5569 0.7194 36 1 3.1565 -2.6375 -1.2857 37 1 1.4755 -2.7835 -0.6721 38 1 0.1204 -1.3778 -1.9362 39 1 0.6749 0.1806 -2.5962 40 1 0.8107 -1.5486 -4.3407 41 1 1.7997 -2.5767 -3.2756 42 1 4.6538 -0.3405 -3.4460 43 1 4.0580 -1.8666 -2.7492 44 1 3.1062 0.9450 -2.0304 45 1 4.0965 -0.1266 -1.0103 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371995434.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:48 Heat of formation + Delta-G solvation = -151.363856 kcal Electronic energy + Delta-G solvation = -26230.489630 eV Core-core repulsion = 22566.617137 eV Total energy + Delta-G solvation = -3663.872493 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.62167 -38.57936 -38.21586 -37.03080 -35.92559 -34.14110 -33.15882 -32.73744 -31.60376 -29.14209 -27.58995 -26.26158 -24.48695 -23.83063 -23.60650 -22.49741 -19.84410 -19.50675 -18.97630 -18.34840 -17.32428 -17.16573 -16.89022 -16.80917 -16.55441 -16.36162 -15.72579 -15.47794 -15.10443 -14.74038 -14.58878 -14.37173 -14.15235 -14.07881 -13.76193 -13.45345 -13.20891 -13.16168 -13.12101 -12.94946 -12.92983 -12.81836 -12.52880 -12.29540 -12.26783 -12.17678 -11.99852 -11.84116 -11.77424 -11.49963 -11.22502 -11.19612 -10.97430 -10.66512 -10.30244 -9.92846 -8.28296 -6.43080 -0.75500 1.39165 1.42872 1.51135 1.73084 2.36313 2.83087 3.03767 3.05215 3.08141 3.40341 3.56758 3.68408 3.96910 4.06058 4.12706 4.14800 4.21198 4.29455 4.34468 4.39831 4.54448 4.58826 4.62231 4.67884 4.70976 4.80416 4.82754 4.89539 4.95180 5.03417 5.09743 5.12083 5.19836 5.21742 5.23044 5.29182 5.36335 5.39542 5.54965 5.60031 5.65120 6.03176 6.38188 6.70065 7.27292 8.83844 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021410 B = 0.003445 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.457243 B = 8125.019694 C = 8747.421774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.153 3.847 3 H 0.077 0.923 4 N -1.007 6.007 5 S 2.628 3.372 6 O -0.983 6.983 7 O -0.995 6.995 8 C -0.589 4.589 9 C 0.022 3.978 10 C -0.542 4.542 11 H 0.075 0.925 12 C -0.004 4.004 13 N -0.934 5.934 14 Si 0.975 3.025 15 H -0.263 1.263 16 H -0.283 1.283 17 H -0.262 1.262 18 C 0.104 3.896 19 C -0.115 4.115 20 C -0.057 4.057 21 C -0.139 4.139 22 C 0.060 3.940 23 O -0.404 6.404 24 C 0.061 3.939 25 C -0.143 4.143 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.006 0.994 32 H 0.005 0.995 33 H 0.268 0.732 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.061 0.939 42 H 0.101 0.899 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.520 -8.699 -24.276 25.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.048 3.952 3 H 0.095 0.905 4 N -0.846 5.846 5 S 2.728 3.272 6 O -0.974 6.974 7 O -0.985 6.985 8 C -0.721 4.721 9 C -0.017 4.017 10 C -0.580 4.580 11 H 0.093 0.907 12 C -0.202 4.202 13 N -0.574 5.574 14 Si 0.798 3.202 15 H -0.187 1.187 16 H -0.209 1.209 17 H -0.187 1.187 18 C -0.021 4.021 19 C -0.153 4.153 20 C -0.059 4.059 21 C -0.177 4.177 22 C -0.017 4.017 23 O -0.323 6.323 24 C -0.016 4.016 25 C -0.181 4.181 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.156 0.844 30 H 0.156 0.844 31 H 0.024 0.976 32 H 0.023 0.977 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.124 0.876 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.121 0.879 41 H 0.080 0.920 42 H 0.119 0.881 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.285 -8.917 -23.676 25.301 hybrid contribution 0.759 0.911 1.227 1.706 sum 0.473 -8.006 -22.449 23.839 Atomic orbital electron populations 1.22636 0.95083 1.02871 1.03955 1.21460 0.94283 0.95690 0.83816 0.90509 1.58586 1.64587 1.40707 1.20732 1.04260 0.76101 0.74744 0.72135 1.93464 1.41081 1.77222 1.85588 1.93481 1.87960 1.44283 1.72813 1.30405 1.18604 1.16112 1.06947 1.18804 0.97861 0.96581 0.88454 1.21474 1.11172 1.27095 0.98307 0.90689 1.26138 0.99009 0.98675 0.96394 1.70094 1.36006 1.45364 1.05895 0.85349 0.78746 0.78769 0.77306 1.18731 1.20855 1.18678 1.22330 0.94912 0.87964 0.96861 1.22898 1.02795 0.95890 0.93742 1.21054 0.96229 0.95468 0.93147 1.22200 0.97979 1.02590 0.94921 1.22745 0.87071 0.95158 0.96681 1.87899 1.24917 1.78133 1.41353 1.22737 0.89865 1.00371 0.88592 1.22130 0.97026 1.00307 0.98603 0.91880 0.89288 0.92135 0.84383 0.84441 0.97589 0.97702 0.92315 0.90803 0.89701 0.87597 0.90110 0.89501 0.90784 0.87944 0.92029 0.88073 0.91666 0.91098 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.35 7.80 71.98 0.56 -3.79 16 2 C 0.15 3.34 3.23 45.08 0.15 3.48 16 3 H 0.08 1.64 7.84 -2.39 -0.02 1.62 16 4 N -1.01 -26.37 3.35 -484.68 -1.63 -28.00 16 5 S 2.63 97.09 5.64 -56.49 -0.32 96.77 16 6 O -0.98 -41.16 14.86 -127.65 -1.90 -43.06 16 7 O -0.99 -42.73 17.28 -127.65 -2.21 -44.94 16 8 C -0.59 -22.93 6.12 71.98 0.44 -22.49 16 9 C 0.02 1.17 4.98 29.85 0.15 1.32 16 10 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 11 H 0.07 3.87 7.74 -2.91 -0.02 3.85 16 12 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 13 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 14 Si 0.98 43.39 29.54 68.60 2.03 45.42 16 15 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 18 C 0.10 2.08 6.76 86.88 0.59 2.67 16 19 C -0.11 -1.62 5.08 31.79 0.16 -1.46 16 20 C -0.06 -0.88 0.49 -51.89 -0.03 -0.90 16 21 C -0.14 -1.81 3.63 30.45 0.11 -1.70 16 22 C 0.06 0.70 6.66 72.06 0.48 1.18 16 23 O -0.40 -6.37 10.75 -148.98 -1.60 -7.97 16 24 C 0.06 0.73 6.65 72.06 0.48 1.21 16 25 C -0.14 -1.96 4.78 30.46 0.15 -1.82 16 26 H 0.06 1.92 5.54 -2.39 -0.01 1.91 16 27 H 0.09 1.59 6.67 -2.39 -0.02 1.58 16 28 H 0.06 1.34 7.49 -2.39 -0.02 1.32 16 29 H 0.14 4.73 8.14 -2.39 -0.02 4.71 16 30 H 0.14 4.75 8.14 -2.39 -0.02 4.73 16 31 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 34 H 0.07 1.64 7.67 -2.39 -0.02 1.62 16 35 H 0.08 1.37 7.71 -2.39 -0.02 1.36 16 36 H 0.11 1.01 6.29 -2.39 -0.02 1.00 16 37 H 0.08 1.13 7.95 -2.39 -0.02 1.11 16 38 H 0.09 1.05 6.63 -2.38 -0.02 1.04 16 39 H 0.07 1.01 7.47 -2.39 -0.02 1.00 16 40 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.06 0.59 7.59 -2.39 -0.02 0.57 16 42 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.07 0.62 6.54 -2.39 -0.02 0.60 16 44 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.08 1.09 7.41 -2.39 -0.02 1.07 16 Total: -1.00 -75.71 352.62 -0.44 -76.14 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.97 Total: 14.86 kcal Atomic # 6 Polarization: -56.13 SS G_CDS: 3.93 Total: -52.20 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -1.34 Total: -85.03 kcal Atomic # 8 Polarization: -90.26 SS G_CDS: -5.70 Total: -95.96 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: 97.09 SS G_CDS: -0.32 Total: 96.77 kcal Total: -75.71 -0.44 -76.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371995434.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.220 kcal (2) G-P(sol) polarization free energy of solvation -75.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds