Wall clock time and date at job start Tue Mar 31 2020 12:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.04912 * 2 1 4 4 N 1.47193 * 109.91389 * 238.81400 * 2 1 3 5 5 S 1.65602 * 125.66733 * 59.34506 * 4 2 1 6 6 O 1.42101 * 104.27602 * 25.78956 * 5 4 2 7 7 O 1.42102 * 104.27724 * 153.64687 * 5 4 2 8 8 C 1.81400 * 104.45243 * 269.71986 * 5 4 2 9 9 C 1.52999 * 109.47139 * 179.97438 * 8 5 4 10 10 C 1.50701 * 109.46919 * 179.97438 * 9 8 5 11 11 H 1.08007 * 119.99988 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99787 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00211 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99969 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47133 * 0.02562 * 14 12 10 16 16 H 1.48492 * 109.47377 * 120.00375 * 14 12 10 17 17 H 1.48503 * 109.47440 * 240.00562 * 14 12 10 18 18 C 1.47496 * 108.66918 * 239.08417 * 4 2 1 19 19 C 1.55034 * 104.90593 * 24.01700 * 18 4 2 20 20 C 1.53594 * 109.91207 * 121.18730 * 2 1 3 21 21 C 1.52346 * 110.77614 * 216.16375 * 20 2 1 22 22 C 1.53251 * 109.21051 * 178.58184 * 21 20 2 23 23 O 1.42910 * 109.31653 * 303.63068 * 22 21 20 24 24 C 1.42918 * 114.25799 * 61.72616 * 23 22 21 25 25 C 1.52349 * 110.79188 * 339.58688 * 20 2 1 26 26 H 1.09000 * 109.47148 * 179.73323 * 1 2 3 27 27 H 1.09003 * 109.47186 * 299.73342 * 1 2 3 28 28 H 1.08999 * 109.47401 * 59.73449 * 1 2 3 29 29 H 1.09005 * 109.46437 * 300.00165 * 8 5 4 30 30 H 1.08997 * 109.47126 * 59.99438 * 8 5 4 31 31 H 1.08998 * 109.47006 * 299.99496 * 9 8 5 32 32 H 1.09001 * 109.47116 * 59.99998 * 9 8 5 33 33 H 0.96998 * 120.00214 * 179.97438 * 13 12 10 34 34 H 1.08999 * 110.34963 * 142.87490 * 18 4 2 35 35 H 1.08997 * 110.35326 * 265.05161 * 18 4 2 36 36 H 1.08994 * 111.01705 * 81.74239 * 19 18 4 37 37 H 1.09000 * 111.01053 * 205.57993 * 19 18 4 38 38 H 1.08999 * 109.51403 * 298.50185 * 21 20 2 39 39 H 1.09005 * 109.51622 * 58.66589 * 21 20 2 40 40 H 1.09001 * 109.49623 * 183.68071 * 22 21 20 41 41 H 1.09001 * 109.49678 * 63.58833 * 22 21 20 42 42 H 1.09000 * 109.50167 * 178.31775 * 24 23 22 43 43 H 1.09007 * 109.49520 * 58.22529 * 24 23 22 44 44 H 1.08997 * 109.51466 * 301.34894 * 25 20 2 45 45 H 1.09005 * 109.51716 * 61.50872 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 7 2.0314 -0.7166 -1.1839 5 16 1.7153 -0.3176 -2.7598 6 8 1.4433 1.0766 -2.7204 7 8 2.8293 -0.8267 -3.4804 8 6 0.2129 -1.2478 -3.1698 9 6 -0.1862 -0.9593 -4.6183 10 6 -1.4340 -1.7326 -4.9591 11 1 -1.8963 -2.3662 -4.2165 12 6 -1.9859 -1.6305 -6.2184 13 7 -1.4233 -0.8586 -7.1224 14 14 -3.5330 -2.5885 -6.6406 15 1 -3.9656 -3.3762 -5.4583 16 1 -4.6110 -1.6429 -7.0262 17 1 -3.2526 -3.5078 -7.7727 18 6 2.8672 -1.8454 -0.7337 19 6 2.3713 -2.1615 0.7008 20 6 2.0531 -0.7478 1.2354 21 6 3.3184 -0.0891 1.7703 22 6 3.7884 -0.8407 3.0203 23 8 2.7322 -0.8647 3.9826 24 6 1.5527 -1.5417 3.5431 25 6 0.9823 -0.8216 2.3166 26 1 -0.3633 -1.0277 -0.0048 27 1 -0.3634 0.5097 0.8924 28 1 -0.3634 0.5179 -0.8876 29 1 0.4023 -2.3146 -3.0502 30 1 -0.5949 -0.9453 -2.5035 31 1 -0.3756 0.1075 -4.7373 32 1 0.6216 -1.2616 -5.2849 33 1 -1.8114 -0.7871 -8.0084 34 1 2.7214 -2.7080 -1.3840 35 1 3.9180 -1.5565 -0.7183 36 1 1.4752 -2.7815 0.6769 37 1 3.1563 -2.6355 1.2900 38 1 4.0976 -0.1255 1.0090 39 1 3.1076 0.9490 2.0274 40 1 4.6556 -0.3346 3.4446 41 1 4.0584 -1.8618 2.7508 42 1 0.8125 -1.5397 4.3432 43 1 1.8005 -2.5698 3.2788 44 1 0.6767 0.1868 2.5958 45 1 0.1208 -1.3725 1.9389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371995435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:53 Heat of formation + Delta-G solvation = -129.233502 kcal Electronic energy + Delta-G solvation = -26294.151891 eV Core-core repulsion = 22631.239042 eV Total energy + Delta-G solvation = -3662.912848 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.91078 -37.84003 -36.63277 -35.44161 -33.91763 -33.30667 -32.08340 -31.19049 -30.92081 -28.27434 -25.79923 -25.37658 -23.85055 -23.07319 -22.13346 -21.07646 -18.77705 -18.51751 -17.53403 -16.67946 -16.42357 -16.30013 -15.98335 -15.51581 -15.17362 -15.04005 -14.58240 -14.46645 -13.97882 -13.66267 -13.48693 -13.34627 -13.10230 -12.61326 -12.52815 -12.47301 -12.14101 -11.85174 -11.76226 -11.61133 -11.55940 -11.51352 -11.31885 -11.10824 -11.10065 -10.97029 -10.84449 -10.55911 -10.41387 -10.39176 -10.37922 -9.78865 -9.68662 -9.33103 -8.76643 -8.52440 -6.14148 -4.19777 0.72792 3.03040 3.23729 3.31000 3.34258 3.60537 4.05430 4.20815 4.27604 4.34354 4.41434 4.64799 4.71590 4.77659 4.86912 4.91441 5.07255 5.12862 5.21014 5.22017 5.26134 5.35197 5.36344 5.39373 5.43205 5.51105 5.61467 5.65793 5.67888 5.72455 5.77188 5.80416 5.91828 5.98855 6.05920 6.20690 6.26523 6.48150 6.53605 6.92125 7.28097 7.33976 7.78883 8.15715 8.83772 9.45057 10.96948 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023484 B = 0.003442 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.991448 B = 8132.546275 C = 8704.425731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.162 3.838 3 H 0.080 0.920 4 N -1.014 6.014 5 S 2.603 3.397 6 O -0.961 6.961 7 O -0.963 6.963 8 C -0.590 4.590 9 C 0.028 3.972 10 C -0.519 4.519 11 H 0.062 0.938 12 C 0.057 3.943 13 N -0.890 5.890 14 Si 0.900 3.100 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.124 3.876 19 C -0.127 4.127 20 C -0.064 4.064 21 C -0.143 4.143 22 C 0.061 3.939 23 O -0.385 6.385 24 C 0.061 3.939 25 C -0.142 4.142 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.033 0.967 32 H 0.032 0.968 33 H 0.265 0.735 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.052 0.948 42 H 0.092 0.908 43 H 0.051 0.949 44 H 0.076 0.924 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.673 -2.199 21.903 23.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.056 3.944 3 H 0.098 0.902 4 N -0.850 5.850 5 S 2.703 3.297 6 O -0.952 6.952 7 O -0.954 6.954 8 C -0.723 4.723 9 C -0.011 4.011 10 C -0.558 4.558 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.528 5.528 14 Si 0.727 3.273 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.002 4.002 19 C -0.165 4.165 20 C -0.065 4.065 21 C -0.181 4.181 22 C -0.015 4.015 23 O -0.303 6.303 24 C -0.016 4.016 25 C -0.180 4.180 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.070 0.930 42 H 0.111 0.889 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.231 -1.415 21.293 22.872 hybrid contribution -1.394 -1.032 -0.561 1.823 sum 6.837 -2.447 20.732 21.967 Atomic orbital electron populations 1.22524 0.95168 1.02942 1.03596 1.21137 0.93815 0.95826 0.83600 0.90199 1.59055 1.62943 1.40924 1.22125 1.05366 0.77524 0.75512 0.71301 1.93531 1.86812 1.29878 1.84956 1.93536 1.49766 1.81865 1.70240 1.30563 1.17726 1.13274 1.10725 1.18970 0.98680 0.98695 0.84789 1.21028 1.09527 1.27536 0.97735 0.92011 1.25074 0.97699 0.95443 0.96301 1.69963 1.40092 1.37975 1.04795 0.86415 0.82669 0.79737 0.78468 1.19654 1.20778 1.20779 1.21917 0.94603 0.88588 0.95071 1.22930 1.02002 0.95999 0.95594 1.21059 0.95569 0.95694 0.94205 1.22122 0.97420 1.00501 0.98066 1.22647 0.90014 0.99654 0.89204 1.87911 1.24163 1.77731 1.40544 1.22651 0.87277 0.94962 0.96723 1.22233 0.98210 1.02483 0.95089 0.91405 0.90543 0.91526 0.86356 0.86176 0.94881 0.94924 0.92565 0.90623 0.91498 0.90176 0.90114 0.90295 0.90589 0.88920 0.92961 0.88938 0.93076 0.90502 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 7.52 37.16 0.28 -1.77 16 2 C 0.16 1.90 2.90 -67.24 -0.20 1.70 16 3 H 0.08 1.00 7.82 -51.93 -0.41 0.59 16 4 N -1.01 -13.98 3.35 -104.58 -0.35 -14.33 16 5 S 2.60 48.42 5.16 -107.50 -0.56 47.87 16 6 O -0.96 -20.36 17.25 -57.54 -0.99 -21.35 16 7 O -0.96 -20.56 17.61 -57.54 -1.01 -21.58 16 8 C -0.59 -11.44 6.12 37.16 0.23 -11.21 16 9 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 10 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 11 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 14 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 C 0.12 1.37 6.57 -2.42 -0.02 1.35 16 19 C -0.13 -1.05 5.08 -24.89 -0.13 -1.18 16 20 C -0.06 -0.56 0.49 -154.10 -0.07 -0.64 16 21 C -0.14 -1.19 4.78 -26.94 -0.13 -1.32 16 22 C 0.06 0.46 6.65 37.29 0.25 0.71 16 23 O -0.38 -3.54 10.75 -35.23 -0.38 -3.92 16 24 C 0.06 0.44 6.66 37.29 0.25 0.69 16 25 C -0.14 -1.08 3.63 -26.94 -0.10 -1.18 16 26 H 0.07 0.69 7.49 -51.93 -0.39 0.30 16 27 H 0.08 0.69 6.67 -51.93 -0.35 0.34 16 28 H 0.07 0.88 6.93 -51.93 -0.36 0.52 16 29 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 30 H 0.12 2.11 6.97 -51.93 -0.36 1.74 16 31 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.70 7.71 -51.93 -0.40 0.30 16 36 H 0.08 0.63 7.95 -51.93 -0.41 0.21 16 37 H 0.08 0.54 6.29 -51.93 -0.33 0.22 16 38 H 0.08 0.66 7.41 -51.93 -0.38 0.28 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.34 6.53 -51.93 -0.34 0.01 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.33 7.59 -51.93 -0.39 -0.06 16 44 H 0.08 0.60 7.47 -51.93 -0.39 0.21 16 45 H 0.08 0.58 6.63 -51.93 -0.34 0.24 16 LS Contribution 354.71 15.07 5.35 5.35 Total: -1.00 -34.67 354.71 -9.77 -44.44 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -7.35 Total: -1.44 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: -0.19 Total: -25.40 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.39 Total: -40.10 kcal Atomic # 8 Polarization: -44.46 SS G_CDS: -2.38 Total: -46.84 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 48.42 SS G_CDS: -0.56 Total: 47.87 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.67 -9.77 -44.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371995435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.791 kcal (2) G-P(sol) polarization free energy of solvation -34.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds