Wall clock time and date at job start Tue Mar 31 2020 12:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.04912 * 2 1 4 4 N 1.47193 * 109.91389 * 238.81400 * 2 1 3 5 5 S 1.65602 * 125.66733 * 59.34506 * 4 2 1 6 6 O 1.42101 * 104.27602 * 25.78956 * 5 4 2 7 7 O 1.42102 * 104.27724 * 153.64687 * 5 4 2 8 8 C 1.81400 * 104.45243 * 269.71986 * 5 4 2 9 9 C 1.52999 * 109.47139 * 179.97438 * 8 5 4 10 10 C 1.50701 * 109.46919 * 179.97438 * 9 8 5 11 11 H 1.08007 * 119.99988 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99787 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00211 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99969 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47133 * 0.02562 * 14 12 10 16 16 H 1.48492 * 109.47377 * 120.00375 * 14 12 10 17 17 H 1.48503 * 109.47440 * 240.00562 * 14 12 10 18 18 C 1.47496 * 108.66918 * 239.08417 * 4 2 1 19 19 C 1.55034 * 104.90593 * 24.01700 * 18 4 2 20 20 C 1.53594 * 109.91207 * 121.18730 * 2 1 3 21 21 C 1.52346 * 110.77614 * 216.16375 * 20 2 1 22 22 C 1.53251 * 109.21051 * 178.58184 * 21 20 2 23 23 O 1.42910 * 109.31653 * 303.63068 * 22 21 20 24 24 C 1.42918 * 114.25799 * 61.72616 * 23 22 21 25 25 C 1.52349 * 110.79188 * 339.58688 * 20 2 1 26 26 H 1.09000 * 109.47148 * 179.73323 * 1 2 3 27 27 H 1.09003 * 109.47186 * 299.73342 * 1 2 3 28 28 H 1.08999 * 109.47401 * 59.73449 * 1 2 3 29 29 H 1.09005 * 109.46437 * 300.00165 * 8 5 4 30 30 H 1.08997 * 109.47126 * 59.99438 * 8 5 4 31 31 H 1.08998 * 109.47006 * 299.99496 * 9 8 5 32 32 H 1.09001 * 109.47116 * 59.99998 * 9 8 5 33 33 H 0.96998 * 120.00214 * 179.97438 * 13 12 10 34 34 H 1.08999 * 110.34963 * 142.87490 * 18 4 2 35 35 H 1.08997 * 110.35326 * 265.05161 * 18 4 2 36 36 H 1.08994 * 111.01705 * 81.74239 * 19 18 4 37 37 H 1.09000 * 111.01053 * 205.57993 * 19 18 4 38 38 H 1.08999 * 109.51403 * 298.50185 * 21 20 2 39 39 H 1.09005 * 109.51622 * 58.66589 * 21 20 2 40 40 H 1.09001 * 109.49623 * 183.68071 * 22 21 20 41 41 H 1.09001 * 109.49678 * 63.58833 * 22 21 20 42 42 H 1.09000 * 109.50167 * 178.31775 * 24 23 22 43 43 H 1.09007 * 109.49520 * 58.22529 * 24 23 22 44 44 H 1.08997 * 109.51466 * 301.34894 * 25 20 2 45 45 H 1.09005 * 109.51716 * 61.50872 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 7 2.0314 -0.7166 -1.1839 5 16 1.7153 -0.3176 -2.7598 6 8 1.4433 1.0766 -2.7204 7 8 2.8293 -0.8267 -3.4804 8 6 0.2129 -1.2478 -3.1698 9 6 -0.1862 -0.9593 -4.6183 10 6 -1.4340 -1.7326 -4.9591 11 1 -1.8963 -2.3662 -4.2165 12 6 -1.9859 -1.6305 -6.2184 13 7 -1.4233 -0.8586 -7.1224 14 14 -3.5330 -2.5885 -6.6406 15 1 -3.9656 -3.3762 -5.4583 16 1 -4.6110 -1.6429 -7.0262 17 1 -3.2526 -3.5078 -7.7727 18 6 2.8672 -1.8454 -0.7337 19 6 2.3713 -2.1615 0.7008 20 6 2.0531 -0.7478 1.2354 21 6 3.3184 -0.0891 1.7703 22 6 3.7884 -0.8407 3.0203 23 8 2.7322 -0.8647 3.9826 24 6 1.5527 -1.5417 3.5431 25 6 0.9823 -0.8216 2.3166 26 1 -0.3633 -1.0277 -0.0048 27 1 -0.3634 0.5097 0.8924 28 1 -0.3634 0.5179 -0.8876 29 1 0.4023 -2.3146 -3.0502 30 1 -0.5949 -0.9453 -2.5035 31 1 -0.3756 0.1075 -4.7373 32 1 0.6216 -1.2616 -5.2849 33 1 -1.8114 -0.7871 -8.0084 34 1 2.7214 -2.7080 -1.3840 35 1 3.9180 -1.5565 -0.7183 36 1 1.4752 -2.7815 0.6769 37 1 3.1563 -2.6355 1.2900 38 1 4.0976 -0.1255 1.0090 39 1 3.1076 0.9490 2.0274 40 1 4.6556 -0.3346 3.4446 41 1 4.0584 -1.8618 2.7508 42 1 0.8125 -1.5397 4.3432 43 1 1.8005 -2.5698 3.2788 44 1 0.6767 0.1868 2.5958 45 1 0.1208 -1.3725 1.9389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371995435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:52 Heat of formation + Delta-G solvation = -154.302758 kcal Electronic energy + Delta-G solvation = -26295.238975 eV Core-core repulsion = 22631.239042 eV Total energy + Delta-G solvation = -3663.999933 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.63952 -38.58744 -38.24702 -37.07091 -35.93483 -34.14975 -33.20798 -32.76799 -31.63144 -29.11016 -27.66027 -26.27936 -24.49577 -23.88347 -23.64836 -22.35530 -19.89519 -19.49663 -19.05202 -18.28352 -17.47941 -17.19481 -16.88187 -16.83521 -16.54001 -16.33235 -15.68293 -15.47012 -15.17304 -14.78394 -14.53623 -14.47706 -14.14399 -13.99641 -13.75800 -13.42405 -13.32566 -13.19531 -13.13238 -13.00926 -12.95531 -12.81404 -12.59432 -12.40898 -12.26492 -12.13072 -12.00527 -11.89944 -11.77244 -11.58904 -11.24451 -11.16933 -11.00456 -10.67836 -10.31303 -9.95024 -8.28002 -6.42522 -0.78348 1.39956 1.40762 1.54089 1.70822 2.36556 2.79962 3.00764 3.05520 3.07806 3.38869 3.56068 3.66965 3.95488 4.05004 4.10406 4.11676 4.19770 4.30079 4.33022 4.37511 4.50475 4.56568 4.61183 4.66056 4.68921 4.74684 4.82825 4.89039 4.92318 5.02012 5.10161 5.11774 5.18601 5.21469 5.22520 5.26393 5.29042 5.37751 5.45500 5.56185 5.65929 6.03119 6.38216 6.71100 7.27920 8.84643 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023484 B = 0.003442 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.991448 B = 8132.546275 C = 8704.425731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.154 3.846 3 H 0.065 0.935 4 N -1.008 6.008 5 S 2.624 3.376 6 O -0.994 6.994 7 O -0.995 6.995 8 C -0.585 4.585 9 C 0.021 3.979 10 C -0.537 4.537 11 H 0.077 0.923 12 C -0.005 4.005 13 N -0.935 5.935 14 Si 0.976 3.024 15 H -0.254 1.254 16 H -0.278 1.278 17 H -0.278 1.278 18 C 0.109 3.891 19 C -0.116 4.116 20 C -0.057 4.057 21 C -0.144 4.144 22 C 0.063 3.937 23 O -0.404 6.404 24 C 0.059 3.941 25 C -0.139 4.139 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.039 0.961 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.004 0.996 32 H 0.005 0.995 33 H 0.268 0.732 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.103 0.897 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.820 -4.330 24.459 25.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.048 3.952 3 H 0.083 0.917 4 N -0.847 5.847 5 S 2.723 3.277 6 O -0.984 6.984 7 O -0.986 6.986 8 C -0.717 4.717 9 C -0.018 4.018 10 C -0.576 4.576 11 H 0.095 0.905 12 C -0.203 4.203 13 N -0.575 5.575 14 Si 0.799 3.201 15 H -0.178 1.178 16 H -0.204 1.204 17 H -0.203 1.203 18 C -0.015 4.015 19 C -0.154 4.154 20 C -0.059 4.059 21 C -0.181 4.181 22 C -0.014 4.014 23 O -0.323 6.323 24 C -0.018 4.018 25 C -0.177 4.177 26 H 0.101 0.899 27 H 0.117 0.883 28 H 0.058 0.942 29 H 0.160 0.840 30 H 0.158 0.842 31 H 0.022 0.978 32 H 0.023 0.977 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.121 0.879 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.377 -3.551 23.852 25.218 hybrid contribution -1.053 -0.321 -1.288 1.694 sum 6.324 -3.872 22.564 23.751 Atomic orbital electron populations 1.22587 0.94646 1.03870 1.03462 1.21388 0.94401 0.95471 0.83896 0.91662 1.58625 1.63125 1.42146 1.20774 1.04360 0.76598 0.74478 0.72237 1.93481 1.87043 1.31905 1.85999 1.93486 1.50747 1.82152 1.72189 1.30443 1.19211 1.15095 1.06933 1.18823 0.97729 0.96791 0.88446 1.21517 1.10082 1.27641 0.98328 0.90501 1.26149 1.01470 0.96456 0.96250 1.70112 1.42140 1.39814 1.05396 0.85234 0.77924 0.78219 0.78687 1.17768 1.20365 1.20327 1.22278 0.94559 0.87636 0.97043 1.22959 1.03263 0.95733 0.93493 1.21033 0.96144 0.95602 0.93108 1.22119 0.97176 1.00295 0.98550 1.22709 0.89905 1.00341 0.88412 1.87896 1.24964 1.78161 1.41306 1.22777 0.86964 0.95263 0.96762 1.22232 0.98028 1.02695 0.94771 0.89864 0.88286 0.94160 0.84046 0.84159 0.97753 0.97714 0.92360 0.90186 0.91059 0.88873 0.87758 0.90624 0.91419 0.88182 0.91561 0.87861 0.91805 0.90863 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.89 7.52 71.98 0.54 -3.35 16 2 C 0.15 3.42 2.90 45.06 0.13 3.55 16 3 H 0.07 1.64 7.82 -2.39 -0.02 1.62 16 4 N -1.01 -26.96 3.35 -484.78 -1.62 -28.58 16 5 S 2.62 99.64 5.16 -56.49 -0.29 99.35 16 6 O -0.99 -43.78 17.25 -127.65 -2.20 -45.98 16 7 O -1.00 -43.60 17.61 -127.65 -2.25 -45.84 16 8 C -0.58 -22.72 6.12 71.98 0.44 -22.27 16 9 C 0.02 1.12 4.98 29.85 0.15 1.27 16 10 C -0.54 -29.85 9.11 25.60 0.23 -29.61 16 11 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 12 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 13 N -0.94 -57.23 13.29 21.45 0.28 -56.95 16 14 Si 0.98 43.17 29.54 68.60 2.03 45.20 16 15 H -0.25 -10.41 7.11 99.48 0.71 -9.70 16 16 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 17 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 18 C 0.11 2.20 6.57 86.89 0.57 2.77 16 19 C -0.12 -1.52 5.08 31.79 0.16 -1.36 16 20 C -0.06 -0.87 0.49 -51.92 -0.03 -0.89 16 21 C -0.14 -2.12 4.78 30.46 0.15 -1.98 16 22 C 0.06 0.77 6.65 72.07 0.48 1.25 16 23 O -0.40 -6.31 10.75 -148.98 -1.60 -7.91 16 24 C 0.06 0.65 6.66 72.07 0.48 1.13 16 25 C -0.14 -1.68 3.63 30.46 0.11 -1.57 16 26 H 0.08 1.45 7.49 -2.39 -0.02 1.43 16 27 H 0.10 1.58 6.67 -2.39 -0.02 1.56 16 28 H 0.04 1.05 6.93 -2.39 -0.02 1.03 16 29 H 0.14 4.77 8.14 -2.39 -0.02 4.75 16 30 H 0.14 4.82 6.97 -2.39 -0.02 4.81 16 31 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 1.38 7.71 -2.39 -0.02 1.37 16 36 H 0.09 1.04 7.95 -2.39 -0.02 1.02 16 37 H 0.10 0.94 6.29 -2.39 -0.02 0.93 16 38 H 0.08 1.16 7.41 -2.39 -0.02 1.14 16 39 H 0.07 1.10 8.14 -2.38 -0.02 1.09 16 40 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.07 0.63 6.53 -2.39 -0.02 0.62 16 42 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.06 0.56 7.59 -2.38 -0.02 0.54 16 44 H 0.07 0.95 7.47 -2.39 -0.02 0.93 16 45 H 0.09 0.95 6.63 -2.38 -0.02 0.93 16 Total: -1.00 -77.03 354.71 -0.81 -77.84 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.97 Total: 13.75 kcal Atomic # 6 Polarization: -54.76 SS G_CDS: 3.88 Total: -50.88 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -1.34 Total: -85.53 kcal Atomic # 8 Polarization: -93.68 SS G_CDS: -6.05 Total: -99.73 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 99.64 SS G_CDS: -0.29 Total: 99.35 kcal Total: -77.03 -0.81 -77.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371995435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.467 kcal (2) G-P(sol) polarization free energy of solvation -77.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds