Wall clock time and date at job start Tue Mar 31 2020 11:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53003 * 109.46914 * 2 1 4 4 H 1.08993 * 109.47141 * 54.99588 * 3 2 1 5 5 C 1.50697 * 109.46729 * 175.00060 * 3 2 1 6 6 H 1.07995 * 120.00238 * 120.00140 * 5 3 2 7 7 C 1.37875 * 120.00059 * 299.99299 * 5 3 2 8 8 N 1.31521 * 120.00052 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00320 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46862 * 60.00148 * 9 7 5 11 11 H 1.48497 * 109.46961 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46926 * 300.00146 * 9 7 5 13 13 N 1.46504 * 109.46977 * 294.99731 * 3 2 1 14 14 C 1.34773 * 120.00428 * 85.00034 * 13 3 2 15 15 O 1.21591 * 119.99564 * 359.97438 * 14 13 3 16 16 N 1.34773 * 120.00491 * 179.97438 * 14 13 3 17 17 C 1.39978 * 120.00150 * 175.54810 * 16 14 13 18 18 C 1.39115 * 120.09336 * 34.64245 * 17 16 14 19 19 C 1.38216 * 120.10942 * 179.97438 * 18 17 16 20 20 C 1.38021 * 120.40501 * 0.02562 * 19 18 17 21 21 C 1.39615 * 119.97648 * 0.02562 * 20 19 18 22 22 C 1.38176 * 120.09132 * 214.36729 * 17 16 14 23 23 C 1.50811 * 133.25841 * 0.72551 * 22 17 16 24 24 N 1.46739 * 106.24283 * 179.51677 * 23 22 17 25 25 C 1.46504 * 125.62712 * 179.79366 * 24 23 22 26 26 C 1.34417 * 108.74307 * 359.77110 * 24 23 22 27 27 O 1.21548 * 124.85644 * 179.97438 * 26 24 23 28 28 H 1.08999 * 109.46974 * 300.00222 * 1 2 3 29 29 H 1.08998 * 109.46698 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46720 * 60.00760 * 1 2 3 31 31 H 1.09003 * 109.46720 * 119.99240 * 2 1 3 32 32 H 1.08999 * 109.47430 * 239.99501 * 2 1 3 33 33 H 0.96997 * 120.00206 * 180.02562 * 8 7 5 34 34 H 0.97002 * 119.99641 * 265.00614 * 13 3 2 35 35 H 0.97002 * 119.99764 * 355.55182 * 16 14 13 36 36 H 1.08005 * 119.94719 * 359.97438 * 18 17 16 37 37 H 1.07999 * 119.79864 * 179.97438 * 19 18 17 38 38 H 1.08004 * 120.01151 * 179.97438 * 20 19 18 39 39 H 1.08996 * 110.29434 * 60.21735 * 23 22 17 40 40 H 1.09000 * 109.95953 * 298.63299 * 23 22 17 41 41 H 1.09006 * 109.46943 * 180.02562 * 25 24 23 42 42 H 1.09008 * 109.47001 * 299.99529 * 25 24 23 43 43 H 1.08991 * 109.47578 * 59.99764 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6522 7 6 4.1433 0.8785 1.2280 8 7 3.4062 0.3368 2.1730 9 14 6.0050 0.8813 1.3819 10 1 6.4995 2.2815 1.3821 11 1 6.3977 0.2168 2.6505 12 1 6.5975 0.1472 0.2351 13 7 1.6525 2.0975 -1.2519 14 6 0.4352 2.6643 -1.3672 15 8 -0.3415 2.6318 -0.4323 16 7 0.0789 3.2673 -2.5186 17 6 -1.2171 3.7738 -2.6716 18 6 -1.8842 4.3236 -1.5817 19 6 -3.1636 4.8244 -1.7324 20 6 -3.7895 4.7831 -2.9619 21 6 -3.1299 4.2326 -4.0624 22 6 -1.8351 3.7342 -3.9068 23 6 -1.4121 3.2146 -5.2579 24 7 -2.5385 3.4639 -6.1646 25 6 -2.5778 3.1264 -7.5897 26 6 -3.5286 4.0525 -5.4717 27 8 -4.5994 4.3879 -5.9390 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5137 0.8901 32 1 1.8935 -0.5139 -0.8899 33 1 3.8292 -0.0609 2.9500 34 1 2.2720 2.1230 -1.9978 35 1 0.7205 3.3502 -3.2414 36 1 -1.4016 4.3593 -0.6161 37 1 -3.6771 5.2497 -0.8828 38 1 -4.7896 5.1759 -3.0724 39 1 -1.2042 2.1460 -5.2038 40 1 -0.5280 3.7508 -5.6027 41 1 -3.5383 3.4276 -8.0081 42 1 -1.7753 3.6501 -8.1093 43 1 -2.4489 2.0511 -7.7122 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417251584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:13 Heat of formation + Delta-G solvation = -16.998810 kcal Electronic energy + Delta-G solvation = -26352.935287 eV Core-core repulsion = 22591.738099 eV Total energy + Delta-G solvation = -3761.197187 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.36447 -39.91603 -38.06550 -36.26324 -35.49926 -34.30296 -32.51084 -32.04955 -31.06146 -29.40053 -27.51098 -26.98049 -26.66056 -23.46107 -22.79892 -21.85059 -21.18024 -19.69886 -19.61020 -18.36265 -17.58950 -16.82788 -16.39668 -16.16544 -15.86204 -15.61434 -15.15963 -14.95253 -14.31088 -14.22190 -13.93293 -13.55089 -13.52722 -13.45724 -13.28365 -12.72397 -12.62195 -12.57500 -12.12493 -12.00887 -11.62729 -11.46241 -11.30660 -11.04719 -10.89121 -10.39360 -10.33613 -10.21323 -10.12055 -9.66795 -9.45821 -9.15058 -9.11967 -8.90519 -8.57242 -8.17602 -7.82836 -6.18814 -4.28766 0.73834 1.20979 2.57993 2.69735 3.01489 3.20789 3.27023 3.28098 3.59062 3.85908 3.94208 4.24558 4.26236 4.78503 4.85549 4.93562 4.97551 5.07733 5.12962 5.18804 5.23169 5.35335 5.38687 5.50651 5.71599 5.91325 6.18063 6.33903 6.35468 6.39226 6.42379 6.50083 6.60938 6.71908 6.91254 6.97275 7.05934 7.25990 7.29531 7.36504 7.57405 7.78340 7.88527 7.94048 8.11689 8.63528 8.74677 9.12591 9.39257 10.86387 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022935 B = 0.002920 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.557142 B = 9587.505681 C =10093.855531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C 0.287 3.713 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.716 5.716 14 C 0.693 3.307 15 O -0.574 6.574 16 N -0.697 5.697 17 C 0.203 3.797 18 C -0.087 4.087 19 C -0.107 4.107 20 C -0.069 4.069 21 C -0.143 4.143 22 C -0.128 4.128 23 C 0.150 3.850 24 N -0.620 5.620 25 C 0.103 3.897 26 C 0.563 3.437 27 O -0.531 6.531 28 H 0.050 0.950 29 H 0.021 0.979 30 H 0.038 0.962 31 H 0.100 0.900 32 H 0.030 0.970 33 H 0.266 0.734 34 H 0.386 0.614 35 H 0.402 0.598 36 H 0.156 0.844 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.504 5.973 -14.586 17.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.367 5.367 14 C 0.394 3.606 15 O -0.452 6.452 16 N -0.345 5.345 17 C 0.106 3.894 18 C -0.108 4.108 19 C -0.126 4.126 20 C -0.089 4.089 21 C -0.147 4.147 22 C -0.132 4.132 23 C 0.027 3.973 24 N -0.354 5.354 25 C -0.037 4.037 26 C 0.352 3.648 27 O -0.409 6.409 28 H 0.069 0.931 29 H 0.040 0.960 30 H 0.057 0.943 31 H 0.118 0.882 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.218 0.782 35 H 0.237 0.763 36 H 0.174 0.826 37 H 0.153 0.847 38 H 0.147 0.853 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.083 0.917 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.640 5.883 -13.844 17.347 hybrid contribution 1.751 -0.143 -0.635 1.868 sum -6.889 5.740 -14.479 17.031 Atomic orbital electron populations 1.21818 0.98233 0.97978 1.01256 1.21965 0.92695 0.99824 1.02280 1.18738 0.94028 0.88907 0.79798 0.93125 1.21168 0.90597 1.39375 1.06400 0.92136 1.24871 0.98629 0.94728 0.95345 1.69879 1.35283 1.37325 1.09313 0.86505 0.84751 0.78322 0.77501 1.20177 1.21102 1.20175 1.45861 1.13134 1.58295 1.19399 1.16098 0.83755 0.78688 0.82102 1.90892 1.51731 1.64658 1.37876 1.42866 1.11772 1.61416 1.18484 1.16630 0.85270 0.95816 0.91655 1.21694 0.95142 0.94376 0.99576 1.21062 0.94863 0.99722 0.96957 1.20764 0.99810 0.97558 0.90803 1.20038 0.95492 1.04697 0.94437 1.20013 0.95588 1.03301 0.94335 1.20308 0.89588 1.01666 0.85710 1.47756 1.16697 1.61119 1.09841 1.21546 1.03705 1.00774 0.77723 1.18317 0.83348 0.76991 0.86096 1.90756 1.23231 1.51721 1.75194 0.93095 0.95976 0.94342 0.88221 0.95090 0.92410 0.78183 0.76297 0.82627 0.84707 0.85262 0.88808 0.89127 0.89583 0.91685 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.51 37.16 0.32 -2.60 16 2 C -0.13 -2.98 5.45 -26.72 -0.15 -3.12 16 3 C 0.29 6.75 2.24 -69.08 -0.15 6.59 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.54 -13.38 8.73 -34.44 -0.30 -13.68 16 6 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.75 11.29 55.43 0.63 -23.12 16 9 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 10 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 13 N -0.72 -13.36 5.03 -59.81 -0.30 -13.66 16 14 C 0.69 12.35 6.98 -86.92 -0.61 11.74 16 15 O -0.57 -12.11 10.89 5.29 0.06 -12.05 16 16 N -0.70 -9.21 5.34 -14.32 -0.08 -9.29 16 17 C 0.20 2.72 6.29 -83.83 -0.53 2.19 16 18 C -0.09 -1.22 8.71 -39.26 -0.34 -1.57 16 19 C -0.11 -1.28 10.01 -39.67 -0.40 -1.67 16 20 C -0.07 -0.84 10.10 -39.15 -0.40 -1.24 16 21 C -0.14 -1.87 6.26 -105.06 -0.66 -2.53 16 22 C -0.13 -1.53 6.29 -104.08 -0.65 -2.18 16 23 C 0.15 1.36 7.38 -5.01 -0.04 1.33 16 24 N -0.62 -6.53 3.37 -184.03 -0.62 -7.15 16 25 C 0.10 0.76 11.25 59.85 0.67 1.43 16 26 C 0.56 7.75 7.97 -12.61 -0.10 7.65 16 27 O -0.53 -8.84 17.47 5.32 0.09 -8.75 16 28 H 0.05 1.17 7.84 -51.93 -0.41 0.76 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.81 5.64 -51.93 -0.29 0.51 16 31 H 0.10 2.58 5.95 -51.93 -0.31 2.27 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 34 H 0.39 6.08 8.56 -40.82 -0.35 5.73 16 35 H 0.40 3.92 8.84 -40.82 -0.36 3.56 16 36 H 0.16 2.47 6.19 -52.48 -0.33 2.15 16 37 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.70 7.64 -51.93 -0.40 0.30 16 42 H 0.06 0.35 8.14 -51.92 -0.42 -0.08 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 354.96 15.07 5.35 5.35 Total: -1.00 -31.62 354.96 -9.07 -40.70 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -5.76 Total: 9.22 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -3.42 Total: 3.99 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.37 Total: -53.22 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: 0.15 Total: -20.80 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.62 -9.07 -40.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417251584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.698 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds