Wall clock time and date at job start Tue Mar 31 2020 11:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53003 * 109.46914 * 2 1 4 4 H 1.08993 * 109.47141 * 54.99588 * 3 2 1 5 5 C 1.50697 * 109.46729 * 175.00060 * 3 2 1 6 6 H 1.07995 * 120.00238 * 120.00140 * 5 3 2 7 7 C 1.37875 * 120.00059 * 299.99299 * 5 3 2 8 8 N 1.31521 * 120.00052 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00320 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46862 * 60.00148 * 9 7 5 11 11 H 1.48497 * 109.46961 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46926 * 300.00146 * 9 7 5 13 13 N 1.46504 * 109.46977 * 294.99731 * 3 2 1 14 14 C 1.34773 * 120.00428 * 85.00034 * 13 3 2 15 15 O 1.21591 * 119.99564 * 359.97438 * 14 13 3 16 16 N 1.34773 * 120.00491 * 179.97438 * 14 13 3 17 17 C 1.39978 * 120.00150 * 175.54810 * 16 14 13 18 18 C 1.39115 * 120.09336 * 34.64245 * 17 16 14 19 19 C 1.38216 * 120.10942 * 179.97438 * 18 17 16 20 20 C 1.38021 * 120.40501 * 0.02562 * 19 18 17 21 21 C 1.39615 * 119.97648 * 0.02562 * 20 19 18 22 22 C 1.38176 * 120.09132 * 214.36729 * 17 16 14 23 23 C 1.50811 * 133.25841 * 0.72551 * 22 17 16 24 24 N 1.46739 * 106.24283 * 179.51677 * 23 22 17 25 25 C 1.46504 * 125.62712 * 179.79366 * 24 23 22 26 26 C 1.34417 * 108.74307 * 359.77110 * 24 23 22 27 27 O 1.21548 * 124.85644 * 179.97438 * 26 24 23 28 28 H 1.08999 * 109.46974 * 300.00222 * 1 2 3 29 29 H 1.08998 * 109.46698 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46720 * 60.00760 * 1 2 3 31 31 H 1.09003 * 109.46720 * 119.99240 * 2 1 3 32 32 H 1.08999 * 109.47430 * 239.99501 * 2 1 3 33 33 H 0.96997 * 120.00206 * 180.02562 * 8 7 5 34 34 H 0.97002 * 119.99641 * 265.00614 * 13 3 2 35 35 H 0.97002 * 119.99764 * 355.55182 * 16 14 13 36 36 H 1.08005 * 119.94719 * 359.97438 * 18 17 16 37 37 H 1.07999 * 119.79864 * 179.97438 * 19 18 17 38 38 H 1.08004 * 120.01151 * 179.97438 * 20 19 18 39 39 H 1.08996 * 110.29434 * 60.21735 * 23 22 17 40 40 H 1.09000 * 109.95953 * 298.63299 * 23 22 17 41 41 H 1.09006 * 109.46943 * 180.02562 * 25 24 23 42 42 H 1.09008 * 109.47001 * 299.99529 * 25 24 23 43 43 H 1.08991 * 109.47578 * 59.99764 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6522 7 6 4.1433 0.8785 1.2280 8 7 3.4062 0.3368 2.1730 9 14 6.0050 0.8813 1.3819 10 1 6.4995 2.2815 1.3821 11 1 6.3977 0.2168 2.6505 12 1 6.5975 0.1472 0.2351 13 7 1.6525 2.0975 -1.2519 14 6 0.4352 2.6643 -1.3672 15 8 -0.3415 2.6318 -0.4323 16 7 0.0789 3.2673 -2.5186 17 6 -1.2171 3.7738 -2.6716 18 6 -1.8842 4.3236 -1.5817 19 6 -3.1636 4.8244 -1.7324 20 6 -3.7895 4.7831 -2.9619 21 6 -3.1299 4.2326 -4.0624 22 6 -1.8351 3.7342 -3.9068 23 6 -1.4121 3.2146 -5.2579 24 7 -2.5385 3.4639 -6.1646 25 6 -2.5778 3.1264 -7.5897 26 6 -3.5286 4.0525 -5.4717 27 8 -4.5994 4.3879 -5.9390 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5137 0.8901 32 1 1.8935 -0.5139 -0.8899 33 1 3.8292 -0.0609 2.9500 34 1 2.2720 2.1230 -1.9978 35 1 0.7205 3.3502 -3.2414 36 1 -1.4016 4.3593 -0.6161 37 1 -3.6771 5.2497 -0.8828 38 1 -4.7896 5.1759 -3.0724 39 1 -1.2042 2.1460 -5.2038 40 1 -0.5280 3.7508 -5.6027 41 1 -3.5383 3.4276 -8.0081 42 1 -1.7753 3.6501 -8.1093 43 1 -2.4489 2.0511 -7.7122 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417251584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:13 Heat of formation + Delta-G solvation = -38.254565 kcal Electronic energy + Delta-G solvation = -26353.857005 eV Core-core repulsion = 22591.738099 eV Total energy + Delta-G solvation = -3762.118906 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.35521 -41.22005 -39.21761 -37.32624 -36.99750 -35.64566 -34.28665 -32.90437 -32.75913 -30.59210 -28.78842 -28.18299 -27.64478 -25.11027 -24.04402 -22.82945 -22.50533 -21.35573 -20.76985 -19.78288 -18.70202 -18.02910 -17.63931 -17.19118 -17.14645 -16.80724 -16.50983 -16.40423 -15.79588 -15.49750 -14.91282 -14.83701 -14.52737 -14.48267 -14.37726 -14.21794 -13.92834 -13.49019 -13.25514 -13.17485 -13.14661 -13.05444 -12.84935 -12.62647 -12.39197 -12.15271 -12.04223 -11.60787 -11.38442 -11.24662 -11.02818 -10.86007 -10.49683 -9.98466 -9.90645 -9.67481 -9.03656 -8.12765 -6.29485 -0.26849 0.21665 1.48235 1.49331 1.56781 1.65030 1.76352 1.82890 2.27529 2.45084 2.79431 3.00655 3.17214 3.36156 3.46590 3.99158 4.20649 4.28261 4.32681 4.38808 4.40600 4.52893 4.54460 4.61947 4.65638 4.76527 4.80377 4.86114 5.00400 5.10227 5.16756 5.30971 5.37058 5.44574 5.48598 5.53460 5.59075 5.64866 5.78946 5.82083 5.89741 5.93776 6.21019 6.28909 6.78898 6.98090 7.28165 7.38964 7.74531 8.92173 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022935 B = 0.002920 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.557142 B = 9587.505681 C =10093.855531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C 0.298 3.702 4 H 0.002 0.998 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.265 1.265 13 N -0.713 5.713 14 C 0.694 3.306 15 O -0.610 6.610 16 N -0.675 5.675 17 C 0.188 3.812 18 C -0.104 4.104 19 C -0.104 4.104 20 C -0.069 4.069 21 C -0.162 4.162 22 C -0.113 4.113 23 C 0.148 3.852 24 N -0.613 5.613 25 C 0.096 3.904 26 C 0.552 3.448 27 O -0.573 6.573 28 H 0.026 0.974 29 H 0.039 0.961 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.264 0.736 34 H 0.403 0.597 35 H 0.422 0.578 36 H 0.133 0.867 37 H 0.156 0.844 38 H 0.141 0.859 39 H 0.114 0.886 40 H 0.127 0.873 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.250 5.903 -17.084 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.161 4.161 3 C 0.194 3.806 4 H 0.020 0.980 5 C -0.585 4.585 6 H 0.092 0.908 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.189 1.189 13 N -0.365 5.365 14 C 0.395 3.605 15 O -0.489 6.489 16 N -0.325 5.325 17 C 0.091 3.909 18 C -0.125 4.125 19 C -0.122 4.122 20 C -0.089 4.089 21 C -0.166 4.166 22 C -0.117 4.117 23 C 0.026 3.974 24 N -0.345 5.345 25 C -0.043 4.043 26 C 0.342 3.658 27 O -0.454 6.454 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.238 0.762 35 H 0.260 0.740 36 H 0.150 0.850 37 H 0.174 0.826 38 H 0.159 0.841 39 H 0.131 0.869 40 H 0.145 0.855 41 H 0.091 0.909 42 H 0.110 0.890 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.350 5.825 -16.435 18.923 hybrid contribution 1.292 -0.077 0.099 1.298 sum -6.058 5.748 -16.336 18.347 Atomic orbital electron populations 1.21642 0.97060 0.98776 1.00269 1.21809 0.93607 0.99376 1.01259 1.18248 0.93303 0.88750 0.80287 0.98021 1.21547 0.91442 1.38858 1.06652 0.90830 1.25716 1.02984 0.94488 0.95128 1.70039 1.37032 1.38335 1.09850 0.85473 0.79481 0.78375 0.77442 1.19720 1.21563 1.18939 1.45420 1.14034 1.58515 1.18517 1.16135 0.83000 0.78564 0.82806 1.90887 1.52655 1.65783 1.39619 1.42428 1.12277 1.60263 1.17498 1.16631 0.85292 0.96791 0.92152 1.21643 0.96159 0.95684 0.99029 1.21225 0.94111 0.99171 0.97690 1.20981 1.00318 0.96971 0.90665 1.20269 0.96272 1.05424 0.94673 1.20123 0.94814 1.01871 0.94941 1.20592 0.89961 1.03135 0.83732 1.47971 1.16040 1.59436 1.11026 1.21820 1.04093 1.02478 0.75938 1.18496 0.83490 0.77311 0.86496 1.90728 1.24915 1.53914 1.75858 0.95520 0.94148 0.93809 0.91108 0.94031 0.92668 0.76205 0.73956 0.84966 0.82607 0.84115 0.86851 0.85522 0.90893 0.89013 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.19 8.51 71.99 0.61 -4.57 16 2 C -0.12 -5.65 5.45 30.60 0.17 -5.49 16 3 C 0.30 14.18 2.24 44.24 0.10 14.28 16 4 H 0.00 0.11 7.58 -2.39 -0.02 0.09 16 5 C -0.55 -27.07 8.73 25.60 0.22 -26.85 16 6 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 7 C 0.02 0.88 5.29 84.65 0.45 1.33 16 8 N -0.91 -50.40 11.29 21.45 0.24 -50.16 16 9 Si 0.97 40.21 29.54 68.60 2.03 42.23 16 10 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 11 H -0.29 -12.15 7.11 99.48 0.71 -11.45 16 12 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 13 N -0.71 -26.00 5.03 -461.41 -2.32 -28.32 16 14 C 0.69 24.36 6.98 179.06 1.25 25.61 16 15 O -0.61 -26.28 10.89 -4.00 -0.04 -26.32 16 16 N -0.68 -16.61 5.34 -317.49 -1.70 -18.31 16 17 C 0.19 4.76 6.29 38.04 0.24 5.00 16 18 C -0.10 -2.92 8.71 22.48 0.20 -2.73 16 19 C -0.10 -2.41 10.01 22.21 0.22 -2.19 16 20 C -0.07 -1.64 10.10 22.55 0.23 -1.41 16 21 C -0.16 -4.06 6.26 -20.15 -0.13 -4.18 16 22 C -0.11 -2.45 6.29 -19.51 -0.12 -2.57 16 23 C 0.15 2.12 7.38 85.62 0.63 2.75 16 24 N -0.61 -11.20 3.37 -854.64 -2.88 -14.08 16 25 C 0.10 1.12 11.25 127.77 1.44 2.55 16 26 C 0.55 14.53 7.97 86.76 0.69 15.23 16 27 O -0.57 -18.99 17.47 -3.87 -0.07 -19.05 16 28 H 0.03 1.24 7.84 -2.39 -0.02 1.22 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.04 1.82 5.64 -2.39 -0.01 1.80 16 31 H 0.07 3.75 5.95 -2.39 -0.01 3.73 16 32 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 34 H 0.40 11.86 8.56 -92.71 -0.79 11.06 16 35 H 0.42 6.89 8.84 -92.71 -0.82 6.07 16 36 H 0.13 4.38 6.19 -2.91 -0.02 4.36 16 37 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 38 H 0.14 2.93 8.06 -2.91 -0.02 2.90 16 39 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.07 7.64 -2.38 -0.02 1.06 16 42 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 43 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -71.16 354.96 0.91 -70.25 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: -0.55 Total: 26.99 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 6.20 Total: 16.76 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -6.65 Total: -110.86 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -0.11 Total: -45.37 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.23 kcal Total: -71.16 0.91 -70.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417251584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.995 kcal (2) G-P(sol) polarization free energy of solvation -71.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds