Wall clock time and date at job start Tue Mar 31 2020 11:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47219 * 2 1 4 4 H 1.08994 * 109.46779 * 304.99618 * 3 2 1 5 5 C 1.50701 * 109.46913 * 184.99793 * 3 2 1 6 6 H 1.08005 * 119.99936 * 239.99860 * 5 3 2 7 7 C 1.37880 * 119.99937 * 59.99941 * 5 3 2 8 8 N 1.31509 * 119.99875 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99867 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47126 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46789 * 120.00195 * 9 7 5 12 12 H 1.48494 * 109.47261 * 240.00229 * 9 7 5 13 13 N 1.46498 * 109.47150 * 64.99829 * 3 2 1 14 14 C 1.34775 * 120.00433 * 275.00362 * 13 3 2 15 15 O 1.21588 * 119.99384 * 359.97438 * 14 13 3 16 16 N 1.34774 * 120.00368 * 180.02562 * 14 13 3 17 17 C 1.39978 * 119.99705 * 174.50792 * 16 14 13 18 18 C 1.39120 * 120.09917 * 335.24796 * 17 16 14 19 19 C 1.38211 * 120.11304 * 179.97438 * 18 17 16 20 20 C 1.38026 * 120.40600 * 0.02566 * 19 18 17 21 21 C 1.39620 * 119.97363 * 359.97438 * 20 19 18 22 22 C 1.38183 * 120.09112 * 154.97189 * 17 16 14 23 23 C 1.50818 * 133.25678 * 0.70699 * 22 17 16 24 24 N 1.46733 * 106.24290 * 179.51461 * 23 22 17 25 25 C 1.46502 * 125.62695 * 179.74910 * 24 23 22 26 26 C 1.34422 * 108.74323 * 359.75974 * 24 23 22 27 27 O 1.21554 * 124.85523 * 179.97438 * 26 24 23 28 28 H 1.09003 * 109.46494 * 60.00118 * 1 2 3 29 29 H 1.08994 * 109.47275 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47157 * 300.00401 * 1 2 3 31 31 H 1.09002 * 109.47157 * 239.99599 * 2 1 3 32 32 H 1.09003 * 109.46846 * 120.00296 * 2 1 3 33 33 H 0.97007 * 119.99773 * 179.97438 * 8 7 5 34 34 H 0.97007 * 119.99627 * 94.99367 * 13 3 2 35 35 H 0.96995 * 119.99840 * 354.22604 * 16 14 13 36 36 H 1.08000 * 119.94273 * 0.02562 * 18 17 16 37 37 H 1.07991 * 119.80104 * 179.97438 * 19 18 17 38 38 H 1.07996 * 120.01404 * 179.97438 * 20 19 18 39 39 H 1.08996 * 110.30282 * 60.21254 * 23 22 17 40 40 H 1.08991 * 109.94537 * 298.63087 * 23 22 17 41 41 H 1.09004 * 109.47264 * 180.02562 * 25 24 23 42 42 H 1.08995 * 109.47838 * 300.02851 * 25 24 23 43 43 H 1.08996 * 109.46958 * 60.03319 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1727 9 14 6.0050 0.8810 -1.3817 10 1 6.5988 1.5460 -0.1941 11 1 6.4970 -0.5177 -1.4628 12 1 6.3992 1.6165 -2.6100 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3411 2.6326 0.4318 16 7 0.0788 3.2674 2.5184 17 6 -1.1375 3.9552 2.6009 18 6 -1.7294 4.4663 1.4503 19 6 -2.9307 5.1451 1.5313 20 6 -3.5521 5.3221 2.7510 21 6 -2.9672 4.8134 3.9122 22 6 -1.7566 4.1236 3.8247 23 6 -1.3951 3.7149 5.2308 24 7 -2.4753 4.2088 6.0923 25 6 -2.5534 4.0387 7.5453 26 6 -3.3815 4.8429 5.3283 27 8 -4.3973 5.3651 5.7442 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8294 -0.0614 -2.9497 34 1 2.2720 2.1231 1.9978 35 1 0.6633 3.2213 3.2911 36 1 -1.2498 4.3318 0.4920 37 1 -3.3855 5.5401 0.6350 38 1 -4.4904 5.8538 2.8070 39 1 -0.4468 4.1655 5.5235 40 1 -1.3298 2.6290 5.2971 41 1 -3.4645 4.5073 7.9176 42 1 -2.5667 2.9759 7.7866 43 1 -1.6872 4.5067 8.0129 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417251585.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:17 Heat of formation + Delta-G solvation = -36.975051 kcal Electronic energy + Delta-G solvation = -26312.201498 eV Core-core repulsion = 22550.138076 eV Total energy + Delta-G solvation = -3762.063422 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.36693 -41.25821 -39.21122 -37.33455 -36.99647 -35.68009 -34.30070 -32.89552 -32.76036 -30.59828 -28.78886 -28.18077 -27.64878 -25.11844 -24.06063 -22.84530 -22.51352 -21.36584 -20.76685 -19.77323 -18.71074 -18.04843 -17.62289 -17.19842 -17.15355 -16.86645 -16.46462 -16.41764 -15.74532 -15.49109 -14.87109 -14.83214 -14.53619 -14.52732 -14.38477 -14.24952 -13.94296 -13.50625 -13.29982 -13.18727 -13.15913 -13.06261 -12.80344 -12.67818 -12.36946 -12.11087 -12.03439 -11.65775 -11.45341 -11.24645 -11.01244 -10.83599 -10.51568 -9.98046 -9.89780 -9.67233 -8.96771 -8.13484 -6.29749 -0.26407 0.23641 1.46466 1.48277 1.58592 1.64950 1.74558 1.82872 2.26004 2.44469 2.82696 3.00145 3.16915 3.36278 3.43817 3.98856 4.20694 4.28644 4.33753 4.39498 4.40363 4.53298 4.54535 4.62065 4.66157 4.76730 4.80658 4.86675 5.00081 5.10169 5.14995 5.31153 5.37210 5.44519 5.48530 5.54071 5.59137 5.65005 5.78668 5.82407 5.90362 5.93680 6.20757 6.28306 6.78933 6.98443 7.25982 7.38554 7.72041 8.91900 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023235 B = 0.002875 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.805563 B = 9737.106277 C =10207.782648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.122 4.122 3 C 0.297 3.703 4 H 0.003 0.997 5 C -0.544 4.544 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.281 1.281 12 H -0.287 1.287 13 N -0.712 5.712 14 C 0.694 3.306 15 O -0.606 6.606 16 N -0.672 5.672 17 C 0.193 3.807 18 C -0.117 4.117 19 C -0.101 4.101 20 C -0.075 4.075 21 C -0.159 4.159 22 C -0.120 4.120 23 C 0.148 3.852 24 N -0.613 5.613 25 C 0.096 3.904 26 C 0.552 3.448 27 O -0.573 6.573 28 H 0.026 0.974 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.264 0.736 34 H 0.403 0.597 35 H 0.423 0.577 36 H 0.137 0.863 37 H 0.155 0.845 38 H 0.140 0.860 39 H 0.127 0.873 40 H 0.116 0.884 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.155 6.183 17.094 19.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C 0.193 3.807 4 H 0.021 0.979 5 C -0.583 4.583 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.183 1.183 11 H -0.207 1.207 12 H -0.213 1.213 13 N -0.364 5.364 14 C 0.394 3.606 15 O -0.486 6.486 16 N -0.320 5.320 17 C 0.096 3.904 18 C -0.138 4.138 19 C -0.119 4.119 20 C -0.095 4.095 21 C -0.163 4.163 22 C -0.125 4.125 23 C 0.026 3.974 24 N -0.344 5.344 25 C -0.043 4.043 26 C 0.342 3.658 27 O -0.454 6.454 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.238 0.762 35 H 0.261 0.739 36 H 0.155 0.845 37 H 0.172 0.828 38 H 0.158 0.842 39 H 0.145 0.855 40 H 0.133 0.867 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.211 6.234 16.425 18.991 hybrid contribution 1.253 -0.154 -0.097 1.266 sum -5.958 6.079 16.328 18.414 Atomic orbital electron populations 1.21647 0.97026 0.98832 1.00302 1.21811 0.93642 0.99340 1.01297 1.18271 0.93357 0.88785 0.80270 0.97928 1.21596 0.91408 1.38660 1.06587 0.90856 1.25709 1.02948 0.94528 0.95162 1.70049 1.36865 1.38431 1.09887 0.85371 0.79561 0.77670 0.78157 1.18347 1.20727 1.21322 1.45447 1.13730 1.58694 1.18522 1.16138 0.82998 0.78575 0.82860 1.90863 1.52442 1.65305 1.40015 1.42471 1.20501 1.54654 1.14361 1.16677 0.86785 0.94732 0.92157 1.21752 0.96996 0.96232 0.98811 1.21215 0.94474 0.98018 0.98188 1.20960 1.00081 0.98199 0.90251 1.20251 0.97663 1.04155 0.94223 1.20035 0.95752 1.02170 0.94529 1.20596 0.91482 1.01751 0.83564 1.47964 1.22750 1.54978 1.08747 1.21819 1.04041 1.03667 0.74800 1.18497 0.82714 0.77942 0.86640 1.90730 1.27279 1.48226 1.79200 0.95487 0.94105 0.93770 0.91108 0.93987 0.92681 0.76187 0.73928 0.84492 0.82750 0.84219 0.85545 0.86677 0.90936 0.89463 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.16 8.51 71.98 0.61 -4.55 16 2 C -0.12 -5.63 5.45 30.60 0.17 -5.47 16 3 C 0.30 14.05 2.24 44.25 0.10 14.15 16 4 H 0.00 0.16 7.58 -2.39 -0.02 0.14 16 5 C -0.54 -26.86 8.73 25.60 0.22 -26.63 16 6 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 7 C 0.02 0.86 5.29 84.66 0.45 1.31 16 8 N -0.91 -50.19 11.29 21.45 0.24 -49.95 16 9 Si 0.97 40.20 29.54 68.60 2.03 42.23 16 10 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 11 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 13 N -0.71 -25.82 5.03 -461.42 -2.32 -28.14 16 14 C 0.69 24.20 6.94 179.06 1.24 25.44 16 15 O -0.61 -25.91 10.63 -3.99 -0.04 -25.95 16 16 N -0.67 -16.50 5.37 -317.48 -1.71 -18.21 16 17 C 0.19 4.94 6.42 38.04 0.24 5.18 16 18 C -0.12 -3.35 8.73 22.48 0.20 -3.15 16 19 C -0.10 -2.40 10.01 22.21 0.22 -2.18 16 20 C -0.07 -1.79 10.10 22.55 0.23 -1.57 16 21 C -0.16 -3.98 6.26 -20.15 -0.13 -4.11 16 22 C -0.12 -2.59 6.27 -19.51 -0.12 -2.71 16 23 C 0.15 2.05 7.29 85.63 0.62 2.68 16 24 N -0.61 -11.02 3.37 -854.66 -2.88 -13.90 16 25 C 0.10 1.09 11.25 127.77 1.44 2.52 16 26 C 0.55 14.50 7.97 86.76 0.69 15.19 16 27 O -0.57 -18.99 17.47 -3.88 -0.07 -19.06 16 28 H 0.03 1.25 7.84 -2.39 -0.02 1.23 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.04 1.81 5.64 -2.39 -0.01 1.80 16 31 H 0.07 3.73 5.95 -2.39 -0.01 3.72 16 32 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.26 13.80 8.31 -92.70 -0.77 13.03 16 34 H 0.40 11.81 8.56 -92.70 -0.79 11.02 16 35 H 0.42 6.81 8.72 -92.71 -0.81 6.00 16 36 H 0.14 4.70 5.78 -2.91 -0.02 4.68 16 37 H 0.15 2.93 8.06 -2.92 -0.02 2.90 16 38 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 39 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.07 1.05 7.64 -2.39 -0.02 1.03 16 42 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -70.91 354.20 0.91 -70.00 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: -0.54 Total: 26.88 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 6.19 Total: 16.09 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -6.66 Total: -110.20 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -0.11 Total: -45.01 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -70.91 0.91 -70.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417251585.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.024 kcal (2) G-P(sol) polarization free energy of solvation -70.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds