Wall clock time and date at job start Tue Mar 31 2020 11:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47294 * 2 1 4 4 H 1.09000 * 109.47054 * 306.56331 * 3 2 1 5 5 C 1.50705 * 109.46740 * 186.56458 * 3 2 1 6 6 H 1.07998 * 120.00145 * 245.68894 * 5 3 2 7 7 C 1.37875 * 119.99884 * 65.69791 * 5 3 2 8 8 N 1.31519 * 119.99805 * 196.36184 * 7 5 3 9 9 Si 1.86798 * 120.00352 * 16.36025 * 7 5 3 10 10 H 1.48497 * 109.47360 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.46916 * 300.00174 * 9 7 5 12 12 H 1.48507 * 109.47382 * 60.00044 * 9 7 5 13 13 N 1.46492 * 109.47000 * 66.56643 * 3 2 1 14 14 C 1.34771 * 120.00224 * 274.99896 * 13 3 2 15 15 O 1.21595 * 120.00023 * 359.97438 * 14 13 3 16 16 N 1.34773 * 120.00518 * 180.02562 * 14 13 3 17 17 C 1.39981 * 120.00436 * 186.03787 * 16 14 13 18 18 C 1.39078 * 120.10391 * 20.13442 * 17 16 14 19 19 C 1.38217 * 120.36374 * 179.76233 * 18 17 16 20 20 C 1.38172 * 120.26617 * 0.51319 * 19 18 17 21 21 C 1.39226 * 119.71149 * 359.77439 * 20 19 18 22 22 C 1.38364 * 120.10755 * 200.41229 * 17 16 14 23 23 C 1.50544 * 120.96574 * 359.93689 * 22 17 16 24 24 C 1.52691 * 109.92500 * 146.00867 * 23 22 17 25 25 N 1.46039 * 111.04288 * 51.13168 * 24 23 22 26 26 C 1.34812 * 121.18122 * 322.30848 * 25 24 23 27 27 O 1.21550 * 120.44931 * 182.75145 * 26 25 24 28 28 H 1.08995 * 109.47546 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46736 * 300.00240 * 1 2 3 30 30 H 1.08997 * 109.47109 * 59.99633 * 1 2 3 31 31 H 1.09003 * 109.46923 * 240.00259 * 2 1 3 32 32 H 1.09002 * 109.47562 * 120.00472 * 2 1 3 33 33 H 0.96996 * 119.99609 * 354.92915 * 8 7 5 34 34 H 0.97001 * 120.00152 * 94.99773 * 13 3 2 35 35 H 0.97005 * 120.00015 * 6.03469 * 16 14 13 36 36 H 1.07998 * 119.82400 * 0.02562 * 18 17 16 37 37 H 1.07994 * 119.87030 * 180.27404 * 19 18 17 38 38 H 1.08000 * 120.14311 * 179.79061 * 20 19 18 39 39 H 1.09005 * 109.39291 * 266.14957 * 23 22 17 40 40 H 1.08998 * 109.39521 * 25.95983 * 23 22 17 41 41 H 1.08997 * 109.16447 * 171.54343 * 24 23 22 42 42 H 1.09010 * 109.16292 * 290.78518 * 24 23 22 43 43 H 0.97001 * 119.40716 * 142.28132 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5840 1.9891 -0.8254 5 6 3.5383 1.4455 -0.1624 6 1 4.1678 1.7988 0.6408 7 6 4.1053 0.9973 -1.3366 8 7 5.3844 0.6938 -1.3752 9 14 3.0568 0.8209 -2.8724 10 1 3.8973 0.3243 -3.9914 11 1 1.9579 -0.1439 -2.6135 12 1 2.4812 2.1415 -3.2333 13 7 1.6849 2.0860 1.2672 14 6 0.4712 2.6517 1.4189 15 8 -0.3291 2.6284 0.5037 16 7 0.1446 3.2441 2.5846 17 6 -1.1562 3.7195 2.7879 18 6 -2.2045 3.2369 2.0117 19 6 -3.4918 3.6989 2.2112 20 6 -3.7474 4.6531 3.1774 21 6 -2.7023 5.1455 3.9544 22 6 -1.4023 4.6752 3.7578 23 6 -0.2867 5.2194 4.6096 24 6 -0.5485 6.6884 4.9336 25 7 -1.8937 6.8751 5.4707 26 6 -2.9391 6.1686 4.9960 27 8 -4.0611 6.3701 5.4177 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 5.9445 0.8546 -0.5998 34 1 2.3234 2.1049 1.9972 35 1 0.8110 3.3411 3.2828 36 1 -2.0125 2.4939 1.2518 37 1 -4.3006 3.3154 1.6070 38 1 -4.7535 5.0152 3.3293 39 1 -0.2279 4.6490 5.5367 40 1 0.6564 5.1316 4.0702 41 1 0.1808 7.0281 5.6690 42 1 -0.4418 7.2799 4.0243 43 1 -2.0374 7.5188 6.1819 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417515323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:10 Heat of formation + Delta-G solvation = -38.078262 kcal Electronic energy + Delta-G solvation = -26606.206982 eV Core-core repulsion = 22844.095721 eV Total energy + Delta-G solvation = -3762.111261 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.12862 -39.98872 -38.19294 -36.35622 -35.72150 -34.51944 -32.58907 -32.06509 -31.56692 -29.98636 -28.83372 -27.12945 -24.34874 -24.26767 -22.59436 -22.01395 -20.84670 -19.86238 -19.67576 -18.68558 -17.85890 -17.39424 -17.07604 -16.29679 -16.02563 -15.71171 -15.24035 -14.78816 -14.45099 -14.37368 -14.10340 -14.05657 -13.46793 -13.37671 -12.95667 -12.81700 -12.71959 -12.60336 -12.39466 -12.01858 -11.82552 -11.68501 -11.41836 -10.99943 -10.78482 -10.55634 -10.44381 -10.19217 -9.96412 -9.65088 -9.49549 -9.43040 -9.15067 -8.83948 -8.42241 -8.34800 -7.91016 -6.66156 -4.30762 0.78340 1.25307 2.66380 2.86473 2.96989 3.33422 3.40130 3.44193 3.54890 3.86765 4.27514 4.29722 4.35099 4.43728 4.57700 4.80256 4.90604 4.98331 5.09026 5.23852 5.30332 5.41791 5.49918 5.56913 5.72412 6.00245 6.03510 6.14915 6.15588 6.19471 6.38483 6.48312 6.55114 6.57706 6.73195 6.83839 6.89000 6.93890 6.99778 7.05862 7.31342 7.36745 7.65157 7.95613 8.15467 8.44791 8.63522 8.94095 9.38714 10.74888 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024263 B = 0.003171 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.746625 B = 8827.821317 C = 9556.264650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.140 4.140 3 C 0.263 3.737 4 H 0.044 0.956 5 C -0.619 4.619 6 H 0.061 0.939 7 C 0.040 3.960 8 N -0.896 5.896 9 Si 1.040 2.960 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.279 1.279 13 N -0.709 5.709 14 C 0.693 3.307 15 O -0.573 6.573 16 N -0.689 5.689 17 C 0.182 3.818 18 C -0.109 4.109 19 C -0.109 4.109 20 C -0.085 4.085 21 C -0.121 4.121 22 C -0.100 4.100 23 C -0.099 4.099 24 C 0.117 3.883 25 N -0.727 5.727 26 C 0.570 3.430 27 O -0.539 6.539 28 H 0.030 0.970 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.269 0.731 34 H 0.391 0.609 35 H 0.403 0.597 36 H 0.166 0.834 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.113 8.406 12.718 18.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.179 4.179 3 C 0.160 3.840 4 H 0.062 0.938 5 C -0.657 4.657 6 H 0.079 0.921 7 C -0.167 4.167 8 N -0.529 5.529 9 Si 0.867 3.133 10 H -0.209 1.209 11 H -0.194 1.194 12 H -0.205 1.205 13 N -0.359 5.359 14 C 0.394 3.606 15 O -0.452 6.452 16 N -0.335 5.335 17 C 0.085 3.915 18 C -0.130 4.130 19 C -0.127 4.127 20 C -0.105 4.105 21 C -0.124 4.124 22 C -0.104 4.104 23 C -0.137 4.137 24 C -0.007 4.007 25 N -0.381 5.381 26 C 0.359 3.641 27 O -0.417 6.417 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.223 0.777 35 H 0.239 0.761 36 H 0.183 0.817 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.087 0.913 43 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -12.181 7.747 10.281 17.723 hybrid contribution 0.848 0.860 2.658 2.920 sum -11.333 8.608 12.940 19.234 Atomic orbital electron populations 1.21883 0.97342 0.98929 1.01925 1.22380 0.93891 0.99746 1.01896 1.19016 0.95904 0.88403 0.80701 0.93847 1.22076 0.89655 1.50131 1.03818 0.92066 1.25683 0.97753 0.92257 1.00979 1.70886 1.06528 1.40719 1.34786 0.84115 0.75493 0.77790 0.75888 1.20887 1.19431 1.20547 1.45606 1.13049 1.58249 1.19032 1.16117 0.83861 0.78817 0.81818 1.90806 1.49837 1.64496 1.40042 1.42863 1.10774 1.61971 1.17938 1.17209 0.84228 0.94098 0.95985 1.22051 0.90702 1.00467 0.99764 1.21114 0.96766 0.97106 0.97742 1.21063 0.98503 0.96366 0.94605 1.19328 0.93364 1.00109 0.99640 1.19455 0.94270 0.97507 0.99217 1.20708 0.97414 0.95804 0.99770 1.21267 0.83288 0.96109 1.00062 1.45707 1.08166 1.43271 1.40916 1.18295 0.83841 0.80650 0.81337 1.90796 1.22595 1.68027 1.60270 0.95061 0.93314 0.92952 0.91173 0.93104 0.92076 0.77657 0.76119 0.81731 0.85072 0.85048 0.89560 0.88970 0.89238 0.91278 0.76067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.55 37.16 0.32 -2.40 16 2 C -0.14 -2.95 5.26 -26.73 -0.14 -3.09 16 3 C 0.26 5.86 1.81 -69.08 -0.12 5.73 16 4 H 0.04 1.06 6.25 -51.93 -0.32 0.74 16 5 C -0.62 -15.83 9.01 -34.44 -0.31 -16.14 16 6 H 0.06 1.63 7.96 -52.49 -0.42 1.22 16 7 C 0.04 1.08 5.31 -17.82 -0.09 0.99 16 8 N -0.90 -25.81 13.70 55.43 0.76 -25.06 16 9 Si 1.04 24.14 26.26 -169.99 -4.46 19.67 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -5.79 5.70 56.52 0.32 -5.47 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.71 -12.90 5.04 -59.81 -0.30 -13.20 16 14 C 0.69 11.91 7.04 -86.93 -0.61 11.30 16 15 O -0.57 -11.42 10.42 5.28 0.06 -11.36 16 16 N -0.69 -8.97 5.10 -14.29 -0.07 -9.04 16 17 C 0.18 2.41 6.47 -83.78 -0.54 1.87 16 18 C -0.11 -1.55 8.77 -39.28 -0.34 -1.90 16 19 C -0.11 -1.33 10.03 -39.61 -0.40 -1.72 16 20 C -0.09 -1.06 9.64 -39.24 -0.38 -1.43 16 21 C -0.12 -1.51 5.78 -105.05 -0.61 -2.12 16 22 C -0.10 -1.14 5.70 -104.13 -0.59 -1.73 16 23 C -0.10 -0.76 5.59 -28.12 -0.16 -0.92 16 24 C 0.12 0.76 7.03 -4.45 -0.03 0.73 16 25 N -0.73 -6.28 5.58 -61.69 -0.34 -6.63 16 26 C 0.57 7.10 7.79 -12.28 -0.10 7.00 16 27 O -0.54 -8.38 17.46 5.32 0.09 -8.29 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.91 5.61 -51.93 -0.29 0.61 16 30 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 31 H 0.07 1.56 4.78 -51.93 -0.25 1.31 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.27 7.65 8.73 -40.82 -0.36 7.30 16 34 H 0.39 6.20 8.55 -40.82 -0.35 5.85 16 35 H 0.40 3.94 7.22 -40.82 -0.29 3.64 16 36 H 0.17 2.66 5.46 -52.49 -0.29 2.38 16 37 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 38 H 0.13 1.52 7.84 -52.49 -0.41 1.11 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.61 6.77 -51.93 -0.35 0.25 16 41 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 43 H 0.40 2.75 8.92 -40.82 -0.36 2.38 16 LS Contribution 342.04 15.07 5.15 5.15 Total: -1.00 -32.35 342.04 -8.75 -41.10 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -5.52 Total: 11.48 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -4.11 Total: -3.83 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.04 Total: -53.93 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: 0.15 Total: -19.65 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -4.46 Total: 19.67 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.35 -8.75 -41.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417515323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.021 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds