Wall clock time and date at job start Tue Mar 31 2020 11:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47294 * 2 1 4 4 H 1.09000 * 109.47054 * 306.56331 * 3 2 1 5 5 C 1.50705 * 109.46740 * 186.56458 * 3 2 1 6 6 H 1.07998 * 120.00145 * 245.68894 * 5 3 2 7 7 C 1.37875 * 119.99884 * 65.69791 * 5 3 2 8 8 N 1.31519 * 119.99805 * 196.36184 * 7 5 3 9 9 Si 1.86798 * 120.00352 * 16.36025 * 7 5 3 10 10 H 1.48497 * 109.47360 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.46916 * 300.00174 * 9 7 5 12 12 H 1.48507 * 109.47382 * 60.00044 * 9 7 5 13 13 N 1.46492 * 109.47000 * 66.56643 * 3 2 1 14 14 C 1.34771 * 120.00224 * 274.99896 * 13 3 2 15 15 O 1.21595 * 120.00023 * 359.97438 * 14 13 3 16 16 N 1.34773 * 120.00518 * 180.02562 * 14 13 3 17 17 C 1.39981 * 120.00436 * 186.03787 * 16 14 13 18 18 C 1.39078 * 120.10391 * 20.13442 * 17 16 14 19 19 C 1.38217 * 120.36374 * 179.76233 * 18 17 16 20 20 C 1.38172 * 120.26617 * 0.51319 * 19 18 17 21 21 C 1.39226 * 119.71149 * 359.77439 * 20 19 18 22 22 C 1.38364 * 120.10755 * 200.41229 * 17 16 14 23 23 C 1.50544 * 120.96574 * 359.93689 * 22 17 16 24 24 C 1.52691 * 109.92500 * 146.00867 * 23 22 17 25 25 N 1.46039 * 111.04288 * 51.13168 * 24 23 22 26 26 C 1.34812 * 121.18122 * 322.30848 * 25 24 23 27 27 O 1.21550 * 120.44931 * 182.75145 * 26 25 24 28 28 H 1.08995 * 109.47546 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46736 * 300.00240 * 1 2 3 30 30 H 1.08997 * 109.47109 * 59.99633 * 1 2 3 31 31 H 1.09003 * 109.46923 * 240.00259 * 2 1 3 32 32 H 1.09002 * 109.47562 * 120.00472 * 2 1 3 33 33 H 0.96996 * 119.99609 * 354.92915 * 8 7 5 34 34 H 0.97001 * 120.00152 * 94.99773 * 13 3 2 35 35 H 0.97005 * 120.00015 * 6.03469 * 16 14 13 36 36 H 1.07998 * 119.82400 * 0.02562 * 18 17 16 37 37 H 1.07994 * 119.87030 * 180.27404 * 19 18 17 38 38 H 1.08000 * 120.14311 * 179.79061 * 20 19 18 39 39 H 1.09005 * 109.39291 * 266.14957 * 23 22 17 40 40 H 1.08998 * 109.39521 * 25.95983 * 23 22 17 41 41 H 1.08997 * 109.16447 * 171.54343 * 24 23 22 42 42 H 1.09010 * 109.16292 * 290.78518 * 24 23 22 43 43 H 0.97001 * 119.40716 * 142.28132 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5840 1.9891 -0.8254 5 6 3.5383 1.4455 -0.1624 6 1 4.1678 1.7988 0.6408 7 6 4.1053 0.9973 -1.3366 8 7 5.3844 0.6938 -1.3752 9 14 3.0568 0.8209 -2.8724 10 1 3.8973 0.3243 -3.9914 11 1 1.9579 -0.1439 -2.6135 12 1 2.4812 2.1415 -3.2333 13 7 1.6849 2.0860 1.2672 14 6 0.4712 2.6517 1.4189 15 8 -0.3291 2.6284 0.5037 16 7 0.1446 3.2441 2.5846 17 6 -1.1562 3.7195 2.7879 18 6 -2.2045 3.2369 2.0117 19 6 -3.4918 3.6989 2.2112 20 6 -3.7474 4.6531 3.1774 21 6 -2.7023 5.1455 3.9544 22 6 -1.4023 4.6752 3.7578 23 6 -0.2867 5.2194 4.6096 24 6 -0.5485 6.6884 4.9336 25 7 -1.8937 6.8751 5.4707 26 6 -2.9391 6.1686 4.9960 27 8 -4.0611 6.3701 5.4177 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 5.9445 0.8546 -0.5998 34 1 2.3234 2.1049 1.9972 35 1 0.8110 3.3411 3.2828 36 1 -2.0125 2.4939 1.2518 37 1 -4.3006 3.3154 1.6070 38 1 -4.7535 5.0152 3.3293 39 1 -0.2279 4.6490 5.5367 40 1 0.6564 5.1316 4.0702 41 1 0.1808 7.0281 5.6690 42 1 -0.4418 7.2799 4.0243 43 1 -2.0374 7.5188 6.1819 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417515323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:09 Heat of formation + Delta-G solvation = -62.094774 kcal Electronic energy + Delta-G solvation = -26607.248416 eV Core-core repulsion = 22844.095721 eV Total energy + Delta-G solvation = -3763.152695 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.16226 -41.14654 -39.30524 -37.33233 -37.09018 -35.77936 -34.48250 -33.21678 -32.82756 -30.99318 -29.82192 -28.82648 -25.31820 -25.06771 -24.30933 -23.31196 -21.92835 -21.47381 -20.74281 -20.07889 -19.19936 -18.55386 -18.11303 -17.38826 -17.02445 -16.89461 -16.56854 -15.97928 -15.70972 -15.39446 -15.26749 -15.04262 -14.91493 -14.58003 -14.40882 -14.27427 -14.04037 -13.75754 -13.64871 -13.47896 -12.86470 -12.66945 -12.48983 -12.45892 -12.32241 -12.24671 -11.78150 -11.62502 -11.34172 -11.20747 -11.06946 -10.81587 -10.46022 -10.24649 -9.89078 -9.74991 -9.00557 -8.77080 -6.42518 -0.18841 0.26837 1.48363 1.52801 1.59097 1.70449 1.74813 2.15381 2.24357 2.43549 2.84570 3.03491 3.28027 3.45158 3.58766 3.77541 4.02698 4.22267 4.27538 4.34172 4.38363 4.43311 4.44335 4.55730 4.64329 4.71955 4.84429 4.88034 5.01734 5.11759 5.19689 5.22289 5.24087 5.33278 5.36205 5.46706 5.58327 5.63309 5.70279 5.84494 5.97479 6.02611 6.08727 6.13443 6.55458 7.10342 7.11855 7.31345 7.57694 8.62520 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024263 B = 0.003171 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.746625 B = 8827.821317 C = 9556.264650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 C 0.271 3.729 4 H 0.025 0.975 5 C -0.611 4.611 6 H 0.042 0.958 7 C -0.004 4.004 8 N -0.930 5.930 9 Si 1.069 2.931 10 H -0.286 1.286 11 H -0.243 1.243 12 H -0.274 1.274 13 N -0.710 5.710 14 C 0.695 3.305 15 O -0.600 6.600 16 N -0.670 5.670 17 C 0.164 3.836 18 C -0.127 4.127 19 C -0.108 4.108 20 C -0.090 4.090 21 C -0.135 4.135 22 C -0.086 4.086 23 C -0.103 4.103 24 C 0.114 3.886 25 N -0.712 5.712 26 C 0.566 3.434 27 O -0.579 6.579 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.258 0.742 34 H 0.402 0.598 35 H 0.421 0.579 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.136 0.864 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.130 0.870 42 H 0.069 0.931 43 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.766 9.171 14.118 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.176 4.176 3 C 0.165 3.835 4 H 0.043 0.957 5 C -0.649 4.649 6 H 0.061 0.939 7 C -0.205 4.205 8 N -0.565 5.565 9 Si 0.891 3.109 10 H -0.212 1.212 11 H -0.167 1.167 12 H -0.199 1.199 13 N -0.362 5.362 14 C 0.396 3.604 15 O -0.480 6.480 16 N -0.318 5.318 17 C 0.067 3.933 18 C -0.148 4.148 19 C -0.126 4.126 20 C -0.110 4.110 21 C -0.139 4.139 22 C -0.090 4.090 23 C -0.140 4.140 24 C -0.010 4.010 25 N -0.365 5.365 26 C 0.354 3.646 27 O -0.461 6.461 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.237 0.763 35 H 0.259 0.741 36 H 0.162 0.838 37 H 0.167 0.833 38 H 0.154 0.846 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.148 0.852 42 H 0.088 0.912 43 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -12.810 8.551 11.759 19.378 hybrid contribution 1.037 0.718 2.334 2.653 sum -11.774 9.269 14.093 20.570 Atomic orbital electron populations 1.21757 0.95509 1.00207 1.01516 1.22271 0.95411 0.98432 1.01484 1.18649 0.93403 0.89415 0.81993 0.95687 1.22281 0.91526 1.48295 1.02812 0.93926 1.26740 0.97919 0.92142 1.03679 1.70985 1.07553 1.43402 1.34565 0.83749 0.75143 0.78690 0.73283 1.21216 1.16739 1.19938 1.45261 1.14025 1.58724 1.18169 1.16103 0.83015 0.78687 0.82571 1.90808 1.50443 1.65350 1.41431 1.42493 1.11270 1.60980 1.17026 1.17302 0.83802 0.95197 0.96953 1.21984 0.91948 1.00814 1.00037 1.21248 0.96652 0.96875 0.97852 1.21225 0.98973 0.96218 0.94536 1.19550 0.93915 1.00498 0.99916 1.19733 0.94993 0.95948 0.98316 1.20889 0.96486 0.96644 0.99962 1.21524 0.82687 0.95362 1.01390 1.45688 1.08235 1.42205 1.40327 1.18344 0.84047 0.80926 0.81237 1.90775 1.24257 1.69376 1.61644 0.92869 0.93182 0.93946 0.92382 0.92727 0.93212 0.76333 0.74076 0.83782 0.83291 0.84625 0.87774 0.87386 0.85202 0.91220 0.74829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 8.55 71.98 0.62 -4.18 16 2 C -0.14 -5.58 5.26 30.59 0.16 -5.42 16 3 C 0.27 11.84 1.81 44.25 0.08 11.92 16 4 H 0.03 1.22 6.25 -2.39 -0.01 1.20 16 5 C -0.61 -31.33 9.01 25.60 0.23 -31.10 16 6 H 0.04 2.30 7.96 -2.91 -0.02 2.27 16 7 C 0.00 -0.21 5.31 84.65 0.45 0.24 16 8 N -0.93 -54.46 13.70 21.45 0.29 -54.16 16 9 Si 1.07 48.43 26.26 68.60 1.80 50.23 16 10 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.24 -9.96 5.70 99.48 0.57 -9.39 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 13 N -0.71 -25.02 5.04 -461.42 -2.33 -27.35 16 14 C 0.70 23.03 7.04 179.06 1.26 24.29 16 15 O -0.60 -23.52 10.42 -4.02 -0.04 -23.56 16 16 N -0.67 -16.12 5.10 -317.37 -1.62 -17.74 16 17 C 0.16 4.08 6.47 38.07 0.25 4.33 16 18 C -0.13 -3.53 8.77 22.47 0.20 -3.34 16 19 C -0.11 -2.56 10.03 22.25 0.22 -2.34 16 20 C -0.09 -2.15 9.64 22.49 0.22 -1.93 16 21 C -0.14 -3.18 5.78 -20.14 -0.12 -3.29 16 22 C -0.09 -1.76 5.70 -19.54 -0.11 -1.87 16 23 C -0.10 -1.19 5.59 29.70 0.17 -1.03 16 24 C 0.11 1.02 7.03 86.36 0.61 1.63 16 25 N -0.71 -10.28 5.58 -467.36 -2.61 -12.89 16 26 C 0.57 13.20 7.79 86.80 0.68 13.87 16 27 O -0.58 -17.64 17.46 -3.87 -0.07 -17.70 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.05 1.79 5.61 -2.38 -0.01 1.77 16 30 H 0.04 1.61 7.93 -2.39 -0.02 1.59 16 31 H 0.06 2.50 4.78 -2.39 -0.01 2.48 16 32 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.26 15.12 8.73 -92.71 -0.81 14.31 16 34 H 0.40 12.20 8.55 -92.71 -0.79 11.41 16 35 H 0.42 7.02 7.22 -92.70 -0.67 6.35 16 36 H 0.14 4.67 5.46 -2.91 -0.02 4.65 16 37 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.14 3.08 7.84 -2.91 -0.02 3.06 16 39 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.11 0.97 6.77 -2.39 -0.02 0.95 16 41 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 42 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 43 H 0.41 4.45 8.92 -92.71 -0.83 3.63 16 Total: -1.00 -71.34 342.04 -1.04 -72.37 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: -1.37 Total: 29.01 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 4.90 Total: 1.79 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -6.26 Total: -112.14 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -0.11 Total: -41.26 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 1.80 Total: 50.23 kcal Total: -71.34 -1.04 -72.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417515323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.279 kcal (2) G-P(sol) polarization free energy of solvation -71.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds