Wall clock time and date at job start Tue Mar 31 2020 11:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99680 * 2 1 4 4 N 1.46497 * 109.47093 * 125.00251 * 3 2 1 5 5 C 1.46504 * 120.00056 * 274.99590 * 4 3 2 6 6 C 1.50697 * 109.47205 * 274.99997 * 5 4 3 7 7 H 1.07997 * 119.99918 * 0.02562 * 6 5 4 8 8 C 1.37871 * 119.99746 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00429 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00060 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46783 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47196 * 119.99936 * 10 8 6 13 13 H 1.48491 * 109.47208 * 240.00389 * 10 8 6 14 14 S 1.65609 * 120.00191 * 95.00072 * 4 3 2 15 15 O 1.42102 * 104.27406 * 333.92498 * 14 4 3 16 16 O 1.42097 * 104.27649 * 206.07163 * 14 4 3 17 17 C 1.81392 * 104.45180 * 89.99691 * 14 4 3 18 18 C 1.52999 * 109.47500 * 180.02562 * 17 14 4 19 19 C 1.53000 * 109.47540 * 179.97438 * 18 17 14 20 20 C 1.53175 * 109.53913 * 65.44548 * 19 18 17 21 21 C 1.53092 * 109.16179 * 176.85000 * 20 19 18 22 22 O 1.42910 * 109.41107 * 302.39040 * 21 20 19 23 23 C 1.42900 * 114.09727 * 61.16189 * 22 21 20 24 24 C 1.53090 * 109.41229 * 298.83586 * 23 22 21 25 25 H 1.07997 * 119.99707 * 180.02562 * 1 2 3 26 26 H 1.07992 * 120.00176 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00554 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47383 * 5.00114 * 3 2 1 29 29 H 1.09003 * 109.46843 * 245.00227 * 3 2 1 30 30 H 1.09004 * 109.46566 * 35.00179 * 5 4 3 31 31 H 1.08998 * 109.46703 * 155.00137 * 5 4 3 32 32 H 0.97005 * 120.00300 * 179.97438 * 9 8 6 33 33 H 1.09009 * 109.47060 * 60.00019 * 17 14 4 34 34 H 1.09005 * 109.47341 * 300.00258 * 17 14 4 35 35 H 1.09005 * 109.46474 * 59.99927 * 18 17 14 36 36 H 1.09005 * 109.47030 * 300.00444 * 18 17 14 37 37 H 1.08997 * 109.61228 * 305.22843 * 19 18 17 38 38 H 1.09006 * 109.52647 * 296.75300 * 20 19 18 39 39 H 1.08998 * 109.52537 * 56.94192 * 20 19 18 40 40 H 1.08998 * 109.48147 * 182.40843 * 21 20 19 41 41 H 1.08997 * 109.48550 * 62.37144 * 21 20 19 42 42 H 1.09003 * 109.47953 * 178.86010 * 23 22 21 43 43 H 1.08995 * 109.49265 * 58.82602 * 23 22 21 44 44 H 1.09001 * 109.52724 * 297.70937 * 24 23 22 45 45 H 1.09000 * 109.52338 * 177.51272 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5285 1.7622 2.4523 6 6 2.5991 3.2647 2.5449 7 1 2.9546 3.8414 1.7039 8 6 2.2089 3.9030 3.7030 9 7 1.7756 3.2007 4.7270 10 14 2.2958 5.7655 3.8178 11 1 2.8134 6.3165 2.5395 12 1 0.9386 6.3093 4.0771 13 1 3.2041 6.1512 4.9274 14 16 4.5713 0.8761 0.9172 15 8 4.5315 -0.0148 -0.1892 16 8 4.9849 0.4308 2.2017 17 6 5.4290 2.4102 0.4686 18 6 6.9133 2.1170 0.2412 19 6 7.6366 3.4109 -0.1378 20 6 7.6030 4.3822 1.0461 21 6 8.3959 5.6413 0.6858 22 8 9.7343 5.2774 0.3416 23 6 9.8303 4.4077 -0.7883 24 6 9.0951 3.0992 -0.4871 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8501 -0.9352 -0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6212 1.4027 -0.9314 30 1 1.4983 1.4372 2.5982 31 1 3.1614 1.3205 3.2219 32 1 1.5014 3.6498 5.5419 33 1 5.3210 3.1359 1.2748 34 1 4.9948 2.8153 -0.4455 35 1 7.0208 1.3914 -0.5652 36 1 7.3478 1.7116 1.1550 37 1 7.1451 3.8665 -0.9973 38 1 6.5702 4.6527 1.2662 39 1 8.0502 3.9076 1.9195 40 1 8.4114 6.3180 1.5401 41 1 7.9245 6.1374 -0.1626 42 1 10.8792 4.1958 -0.9957 43 1 9.3778 4.8876 -1.6560 44 1 9.5724 2.5986 0.3554 45 1 9.1293 2.4520 -1.3635 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431574330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:10 Heat of formation + Delta-G solvation = -116.720797 kcal Electronic energy + Delta-G solvation = -25754.215228 eV Core-core repulsion = 22091.844971 eV Total energy + Delta-G solvation = -3662.370257 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.56528 -36.62256 -36.31978 -35.74561 -35.31103 -33.23241 -31.91229 -31.41481 -30.88431 -27.51667 -25.73865 -24.93233 -23.66380 -22.54606 -21.76537 -20.14130 -19.67435 -18.18726 -16.92690 -16.59774 -16.30149 -16.16472 -15.94859 -15.63104 -15.24030 -14.80687 -14.63857 -14.48361 -14.03582 -13.75084 -13.38721 -13.04550 -12.69520 -12.53998 -12.48176 -12.23235 -12.12045 -11.74774 -11.58902 -11.49123 -11.40147 -11.28590 -11.20036 -11.02743 -10.88903 -10.77200 -10.54877 -10.49253 -10.44729 -10.24659 -10.03045 -9.81534 -9.55845 -9.04390 -8.54918 -8.06804 -6.16143 -4.24158 0.86861 2.62350 3.19328 3.27094 3.28851 3.42307 3.75780 4.26153 4.32670 4.52231 4.57417 4.68012 4.73078 4.87519 4.98736 5.11735 5.16243 5.20797 5.26191 5.33540 5.38756 5.44595 5.48107 5.55523 5.59860 5.67233 5.73629 5.80989 5.85521 5.94195 6.00311 6.11939 6.21089 6.28470 6.31403 6.46316 6.99618 7.06438 7.08156 7.35963 7.40792 7.62054 7.80387 8.09518 8.80743 9.42460 10.91657 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010413 B = 0.005090 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.365210 B = 5499.133836 C = 7487.027979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.158 4.158 3 C 0.158 3.842 4 N -0.982 5.982 5 C 0.243 3.757 6 C -0.547 4.547 7 H 0.062 0.938 8 C 0.066 3.934 9 N -0.885 5.885 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.282 1.282 14 S 2.607 3.393 15 O -0.977 6.977 16 O -0.955 6.955 17 C -0.635 4.635 18 C -0.104 4.104 19 C -0.080 4.080 20 C -0.159 4.159 21 C 0.061 3.939 22 O -0.386 6.386 23 C 0.061 3.939 24 C -0.155 4.155 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.265 0.735 33 H 0.144 0.856 34 H 0.124 0.876 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.049 0.951 42 H 0.091 0.909 43 H 0.048 0.952 44 H 0.074 0.926 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.016 1.172 -11.777 14.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.178 4.178 3 C 0.031 3.969 4 N -0.819 5.819 5 C 0.121 3.879 6 C -0.586 4.586 7 H 0.080 0.920 8 C -0.137 4.137 9 N -0.523 5.523 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.208 1.208 14 S 2.700 3.300 15 O -0.968 6.968 16 O -0.945 6.945 17 C -0.763 4.763 18 C -0.143 4.143 19 C -0.099 4.099 20 C -0.197 4.197 21 C -0.016 4.016 22 O -0.304 6.304 23 C -0.015 4.015 24 C -0.193 4.193 25 H 0.111 0.889 26 H 0.115 0.885 27 H 0.125 0.875 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.162 0.838 34 H 0.143 0.857 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.067 0.933 42 H 0.110 0.890 43 H 0.067 0.933 44 H 0.093 0.907 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.435 0.395 -11.361 14.773 hybrid contribution -0.485 1.694 -0.044 1.763 sum 8.950 2.089 -11.404 14.646 Atomic orbital electron populations 1.23764 0.95818 1.01511 1.01714 1.23448 0.96250 0.99428 0.98651 1.20175 0.93148 0.95498 0.88044 1.57390 1.24070 1.82873 1.17552 1.19238 0.97250 0.94571 0.76793 1.21600 1.45215 0.92064 0.99732 0.92009 1.24949 0.94882 0.98384 0.95532 1.69941 1.42743 1.35549 1.04092 0.86561 0.77942 0.85467 0.78164 1.19712 1.20843 1.20782 1.04917 0.74355 0.76665 0.74030 1.93522 1.86365 1.61128 1.55765 1.93566 1.82007 1.79318 1.39632 1.30778 1.07332 1.25430 1.12725 1.21337 0.91713 0.98501 1.02729 1.21126 0.94929 0.95388 0.98477 1.22365 1.01973 0.96527 0.98822 1.22609 0.82611 0.96108 1.00266 1.87921 1.27025 1.66490 1.49013 1.22552 1.00869 0.89754 0.88374 1.22303 0.95839 0.98398 1.02752 0.88945 0.88461 0.87462 0.89647 0.90932 0.94170 0.92772 0.92548 0.83783 0.85731 0.90702 0.90376 0.90696 0.89800 0.90519 0.88757 0.93267 0.89043 0.93340 0.90681 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.79 14.32 29.01 0.42 -2.38 16 2 C -0.16 -2.61 9.84 -36.02 -0.35 -2.97 16 3 C 0.16 2.69 5.69 -5.19 -0.03 2.66 16 4 N -0.98 -19.59 2.68 -116.95 -0.31 -19.91 16 5 C 0.24 5.92 5.41 -5.19 -0.03 5.89 16 6 C -0.55 -13.81 9.38 -34.44 -0.32 -14.13 16 7 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 8 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -24.92 13.29 55.43 0.74 -24.18 16 10 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 16 11 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 S 2.61 48.57 5.37 -107.50 -0.58 47.99 16 15 O -0.98 -18.80 16.99 -57.54 -0.98 -19.78 16 16 O -0.95 -21.38 16.53 -57.54 -0.95 -22.33 16 17 C -0.63 -9.32 5.94 37.16 0.22 -9.10 16 18 C -0.10 -1.33 4.69 -26.73 -0.13 -1.45 16 19 C -0.08 -0.89 2.27 -90.44 -0.21 -1.10 16 20 C -0.16 -1.92 5.10 -26.59 -0.14 -2.06 16 21 C 0.06 0.67 6.84 37.21 0.25 0.93 16 22 O -0.39 -4.66 10.77 -35.23 -0.38 -5.04 16 23 C 0.06 0.58 6.84 37.20 0.25 0.84 16 24 C -0.16 -1.51 5.42 -26.59 -0.14 -1.65 16 25 H 0.09 1.19 8.06 -52.49 -0.42 0.77 16 26 H 0.10 1.37 7.84 -52.49 -0.41 0.95 16 27 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 28 H 0.09 1.44 7.76 -51.93 -0.40 1.04 16 29 H 0.07 1.06 7.61 -51.93 -0.40 0.67 16 30 H 0.04 1.04 8.11 -51.93 -0.42 0.62 16 31 H 0.05 1.46 6.82 -51.93 -0.35 1.11 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.14 2.25 6.66 -51.92 -0.35 1.91 16 34 H 0.12 1.55 8.14 -51.92 -0.42 1.13 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.06 6.75 -51.93 -0.35 0.71 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 377.05 15.07 5.68 5.68 Total: -1.00 -31.58 377.05 -9.82 -41.40 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -7.72 Total: 3.96 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: -0.30 Total: -22.87 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.42 Total: -44.09 kcal Atomic # 8 Polarization: -44.84 SS G_CDS: -2.31 Total: -47.14 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 48.57 SS G_CDS: -0.58 Total: 47.99 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.58 -9.82 -41.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431574330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.320 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds