Wall clock time and date at job start Tue Mar 31 2020 11:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99680 * 2 1 4 4 N 1.46497 * 109.47093 * 125.00251 * 3 2 1 5 5 C 1.46504 * 120.00056 * 274.99590 * 4 3 2 6 6 C 1.50697 * 109.47205 * 274.99997 * 5 4 3 7 7 H 1.07997 * 119.99918 * 0.02562 * 6 5 4 8 8 C 1.37871 * 119.99746 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00429 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00060 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46783 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47196 * 119.99936 * 10 8 6 13 13 H 1.48491 * 109.47208 * 240.00389 * 10 8 6 14 14 S 1.65609 * 120.00191 * 95.00072 * 4 3 2 15 15 O 1.42102 * 104.27406 * 333.92498 * 14 4 3 16 16 O 1.42097 * 104.27649 * 206.07163 * 14 4 3 17 17 C 1.81392 * 104.45180 * 89.99691 * 14 4 3 18 18 C 1.52999 * 109.47500 * 180.02562 * 17 14 4 19 19 C 1.53000 * 109.47540 * 179.97438 * 18 17 14 20 20 C 1.53175 * 109.53913 * 65.44548 * 19 18 17 21 21 C 1.53092 * 109.16179 * 176.85000 * 20 19 18 22 22 O 1.42910 * 109.41107 * 302.39040 * 21 20 19 23 23 C 1.42900 * 114.09727 * 61.16189 * 22 21 20 24 24 C 1.53090 * 109.41229 * 298.83586 * 23 22 21 25 25 H 1.07997 * 119.99707 * 180.02562 * 1 2 3 26 26 H 1.07992 * 120.00176 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00554 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47383 * 5.00114 * 3 2 1 29 29 H 1.09003 * 109.46843 * 245.00227 * 3 2 1 30 30 H 1.09004 * 109.46566 * 35.00179 * 5 4 3 31 31 H 1.08998 * 109.46703 * 155.00137 * 5 4 3 32 32 H 0.97005 * 120.00300 * 179.97438 * 9 8 6 33 33 H 1.09009 * 109.47060 * 60.00019 * 17 14 4 34 34 H 1.09005 * 109.47341 * 300.00258 * 17 14 4 35 35 H 1.09005 * 109.46474 * 59.99927 * 18 17 14 36 36 H 1.09005 * 109.47030 * 300.00444 * 18 17 14 37 37 H 1.08997 * 109.61228 * 305.22843 * 19 18 17 38 38 H 1.09006 * 109.52647 * 296.75300 * 20 19 18 39 39 H 1.08998 * 109.52537 * 56.94192 * 20 19 18 40 40 H 1.08998 * 109.48147 * 182.40843 * 21 20 19 41 41 H 1.08997 * 109.48550 * 62.37144 * 21 20 19 42 42 H 1.09003 * 109.47953 * 178.86010 * 23 22 21 43 43 H 1.08995 * 109.49265 * 58.82602 * 23 22 21 44 44 H 1.09001 * 109.52724 * 297.70937 * 24 23 22 45 45 H 1.09000 * 109.52338 * 177.51272 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5285 1.7622 2.4523 6 6 2.5991 3.2647 2.5449 7 1 2.9546 3.8414 1.7039 8 6 2.2089 3.9030 3.7030 9 7 1.7756 3.2007 4.7270 10 14 2.2958 5.7655 3.8178 11 1 2.8134 6.3165 2.5395 12 1 0.9386 6.3093 4.0771 13 1 3.2041 6.1512 4.9274 14 16 4.5713 0.8761 0.9172 15 8 4.5315 -0.0148 -0.1892 16 8 4.9849 0.4308 2.2017 17 6 5.4290 2.4102 0.4686 18 6 6.9133 2.1170 0.2412 19 6 7.6366 3.4109 -0.1378 20 6 7.6030 4.3822 1.0461 21 6 8.3959 5.6413 0.6858 22 8 9.7343 5.2774 0.3416 23 6 9.8303 4.4077 -0.7883 24 6 9.0951 3.0992 -0.4871 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8501 -0.9352 -0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6212 1.4027 -0.9314 30 1 1.4983 1.4372 2.5982 31 1 3.1614 1.3205 3.2219 32 1 1.5014 3.6498 5.5419 33 1 5.3210 3.1359 1.2748 34 1 4.9948 2.8153 -0.4455 35 1 7.0208 1.3914 -0.5652 36 1 7.3478 1.7116 1.1550 37 1 7.1451 3.8665 -0.9973 38 1 6.5702 4.6527 1.2662 39 1 8.0502 3.9076 1.9195 40 1 8.4114 6.3180 1.5401 41 1 7.9245 6.1374 -0.1626 42 1 10.8792 4.1958 -0.9957 43 1 9.3778 4.8876 -1.6560 44 1 9.5724 2.5986 0.3554 45 1 9.1293 2.4520 -1.3635 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431574330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:09 Heat of formation + Delta-G solvation = -137.351083 kcal Electronic energy + Delta-G solvation = -25755.109824 eV Core-core repulsion = 22091.844971 eV Total energy + Delta-G solvation = -3663.264853 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.39887 -38.16522 -37.88628 -36.93190 -36.65791 -34.99207 -33.52419 -32.28506 -31.83826 -29.32054 -26.73945 -26.49596 -24.48790 -24.20351 -22.87366 -21.02180 -20.96454 -19.69185 -18.58669 -18.31439 -17.53090 -17.46806 -16.97848 -16.78307 -16.52130 -16.13665 -15.86105 -15.56354 -15.21821 -15.00284 -14.61903 -14.43556 -14.20518 -13.78510 -13.71147 -13.47116 -13.37270 -13.16018 -13.07891 -13.00085 -12.92020 -12.50538 -12.45635 -12.35840 -12.24612 -12.22910 -11.96553 -11.87260 -11.67725 -11.49337 -11.33349 -11.12026 -10.58970 -10.44493 -10.30865 -9.70738 -8.16193 -6.31415 -0.59611 1.33498 1.43286 1.44998 1.55596 1.93962 2.42278 2.92720 3.00118 3.15773 3.27498 3.50044 3.66619 3.78991 3.94129 4.02868 4.08279 4.13464 4.17917 4.32594 4.40276 4.46272 4.50632 4.55894 4.72099 4.77478 4.81791 4.82885 4.89113 4.94028 4.96648 5.03304 5.08718 5.17000 5.22929 5.33407 5.42510 5.48073 5.72482 5.77361 5.80997 6.02686 6.10316 6.29115 6.82397 7.39752 8.92228 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010413 B = 0.005090 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.365210 B = 5499.133836 C = 7487.027979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.188 4.188 3 C 0.151 3.849 4 N -0.989 5.989 5 C 0.261 3.739 6 C -0.546 4.546 7 H 0.080 0.920 8 C 0.010 3.990 9 N -0.929 5.929 10 Si 0.958 3.042 11 H -0.252 1.252 12 H -0.283 1.283 13 H -0.285 1.285 14 S 2.602 3.398 15 O -0.986 6.986 16 O -1.003 7.003 17 C -0.608 4.608 18 C -0.111 4.111 19 C -0.076 4.076 20 C -0.164 4.164 21 C 0.061 3.939 22 O -0.406 6.406 23 C 0.056 3.944 24 C -0.154 4.154 25 H 0.111 0.889 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.015 0.985 31 H 0.017 0.983 32 H 0.265 0.735 33 H 0.138 0.862 34 H 0.158 0.842 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.096 0.904 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.668 3.022 -14.375 17.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.208 4.208 3 C 0.026 3.974 4 N -0.825 5.825 5 C 0.137 3.863 6 C -0.585 4.585 7 H 0.098 0.902 8 C -0.190 4.190 9 N -0.569 5.569 10 Si 0.783 3.217 11 H -0.175 1.175 12 H -0.209 1.209 13 H -0.211 1.211 14 S 2.701 3.299 15 O -0.976 6.976 16 O -0.994 6.994 17 C -0.740 4.740 18 C -0.150 4.150 19 C -0.096 4.096 20 C -0.202 4.202 21 C -0.016 4.016 22 O -0.326 6.326 23 C -0.020 4.020 24 C -0.191 4.191 25 H 0.129 0.871 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.105 0.895 29 H 0.117 0.883 30 H 0.033 0.967 31 H 0.035 0.965 32 H 0.074 0.926 33 H 0.156 0.844 34 H 0.176 0.824 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.125 0.875 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.060 2.195 -13.984 17.366 hybrid contribution -0.669 1.051 0.707 1.433 sum 9.391 3.246 -13.277 16.583 Atomic orbital electron populations 1.24007 0.95281 1.02836 0.98890 1.23447 0.97050 0.98973 1.01299 1.20412 0.93255 0.95828 0.87934 1.57260 1.25417 1.83088 1.16758 1.18703 0.95052 0.94293 0.78267 1.21954 1.44023 0.92438 1.00057 0.90184 1.25852 0.94670 1.03171 0.95267 1.70089 1.44361 1.37622 1.04839 0.85510 0.77725 0.79714 0.78798 1.17485 1.20853 1.21065 1.04890 0.74027 0.77945 0.73038 1.93501 1.86380 1.62593 1.55159 1.93506 1.82528 1.81211 1.42178 1.30512 1.08219 1.21352 1.13949 1.21501 0.90153 1.00137 1.03219 1.21134 0.95917 0.94021 0.98519 1.22393 1.01559 0.97368 0.98862 1.22635 0.82335 0.95613 1.00988 1.87898 1.27438 1.67089 1.50132 1.22747 1.02019 0.89211 0.88011 1.22308 0.94573 0.98964 1.03289 0.87052 0.87663 0.88391 0.89476 0.88252 0.96650 0.96466 0.92632 0.84383 0.82379 0.88862 0.91282 0.89014 0.90527 0.92023 0.88594 0.91863 0.87537 0.91922 0.91622 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.86 14.32 67.78 0.97 -3.89 16 2 C -0.19 -6.15 9.84 25.65 0.25 -5.90 16 3 C 0.15 5.02 5.69 85.63 0.49 5.51 16 4 N -0.99 -39.70 2.68 -523.91 -1.41 -41.11 16 5 C 0.26 13.08 5.41 85.63 0.46 13.55 16 6 C -0.55 -27.51 9.38 25.60 0.24 -27.27 16 7 H 0.08 3.65 7.81 -2.91 -0.02 3.63 16 8 C 0.01 0.52 5.46 84.65 0.46 0.99 16 9 N -0.93 -53.65 13.29 21.44 0.28 -53.36 16 10 Si 0.96 40.69 29.54 68.60 2.03 42.72 16 11 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 12 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 13 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 14 S 2.60 96.98 5.37 -56.49 -0.30 96.67 16 15 O -0.99 -37.27 16.99 -127.65 -2.17 -39.44 16 16 O -1.00 -46.84 16.53 -127.65 -2.11 -48.95 16 17 C -0.61 -16.62 5.94 71.98 0.43 -16.19 16 18 C -0.11 -2.60 4.69 30.59 0.14 -2.46 16 19 C -0.08 -1.49 2.27 -10.68 -0.02 -1.52 16 20 C -0.16 -3.69 5.10 30.68 0.16 -3.53 16 21 C 0.06 1.22 6.84 72.01 0.49 1.72 16 22 O -0.41 -8.97 10.77 -148.98 -1.60 -10.57 16 23 C 0.06 0.90 6.84 72.01 0.49 1.40 16 24 C -0.15 -2.55 5.42 30.68 0.17 -2.38 16 25 H 0.11 2.68 8.06 -2.91 -0.02 2.65 16 26 H 0.11 2.79 7.84 -2.91 -0.02 2.77 16 27 H 0.10 3.35 8.06 -2.91 -0.02 3.33 16 28 H 0.09 2.84 7.76 -2.39 -0.02 2.82 16 29 H 0.10 2.71 7.61 -2.39 -0.02 2.69 16 30 H 0.02 0.83 8.11 -2.39 -0.02 0.81 16 31 H 0.02 0.99 6.82 -2.39 -0.02 0.97 16 32 H 0.26 14.44 8.31 -92.70 -0.77 13.67 16 33 H 0.14 4.11 6.66 -2.39 -0.02 4.09 16 34 H 0.16 3.30 8.14 -2.39 -0.02 3.28 16 35 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 36 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.08 1.81 6.75 -2.38 -0.02 1.79 16 39 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -69.59 377.05 0.39 -69.20 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.94 Total: 24.83 kcal Atomic # 6 Polarization: -44.72 SS G_CDS: 4.73 Total: -39.98 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -1.12 Total: -94.47 kcal Atomic # 8 Polarization: -93.08 SS G_CDS: -5.88 Total: -98.97 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Atomic # 16 Polarization: 96.98 SS G_CDS: -0.30 Total: 96.67 kcal Total: -69.59 0.39 -69.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431574330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.151 kcal (2) G-P(sol) polarization free energy of solvation -69.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds