Wall clock time and date at job start Tue Mar 31 2020 12:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99753 * 2 1 4 4 C 1.52999 * 109.46814 * 177.56096 * 3 2 1 5 5 C 1.52999 * 109.47029 * 57.56244 * 3 2 1 6 6 N 1.46499 * 109.47500 * 64.99873 * 5 3 2 7 7 S 1.65598 * 120.00139 * 164.99739 * 6 5 3 8 8 O 1.42097 * 104.28024 * 308.92860 * 7 6 5 9 9 O 1.42100 * 104.27740 * 181.07192 * 7 6 5 10 10 C 1.81405 * 104.44994 * 65.00088 * 7 6 5 11 11 C 1.52993 * 109.46994 * 173.79012 * 10 7 6 12 12 C 1.50699 * 115.55350 * 62.02516 * 11 10 7 13 13 H 1.08007 * 119.99849 * 264.55839 * 12 11 10 14 14 C 1.37872 * 120.00112 * 84.55393 * 12 11 10 15 15 N 1.31508 * 120.00000 * 1.85722 * 14 12 11 16 16 Si 1.86806 * 119.99957 * 181.86241 * 14 12 11 17 17 H 1.48498 * 109.47068 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47241 * 120.00110 * 16 14 12 19 19 H 1.48505 * 109.46869 * 239.99994 * 16 14 12 20 20 C 1.53004 * 117.49875 * 276.34865 * 11 10 7 21 21 C 1.53010 * 117.49794 * 207.69349 * 11 10 7 22 22 C 1.52995 * 109.47230 * 297.56068 * 3 2 1 23 23 C 1.52995 * 117.50020 * 248.70126 * 22 3 2 24 24 C 1.52999 * 60.00151 * 252.51037 * 23 22 3 25 25 H 1.09006 * 109.47261 * 178.21739 * 1 2 3 26 26 H 1.09004 * 109.47105 * 298.21255 * 1 2 3 27 27 H 1.09005 * 109.47610 * 58.21514 * 1 2 3 28 28 H 1.08996 * 109.47037 * 299.99716 * 4 3 2 29 29 H 1.08994 * 109.47115 * 59.99950 * 4 3 2 30 30 H 1.09004 * 109.47100 * 180.02562 * 4 3 2 31 31 H 1.09007 * 109.47551 * 304.99450 * 5 3 2 32 32 H 1.09007 * 109.46817 * 184.99823 * 5 3 2 33 33 H 0.97003 * 119.99581 * 345.00194 * 6 5 3 34 34 H 1.09000 * 109.46833 * 293.78816 * 10 7 6 35 35 H 1.09000 * 109.46941 * 53.78879 * 10 7 6 36 36 H 0.97010 * 120.00069 * 185.01145 * 15 14 12 37 37 H 1.08999 * 117.50168 * 0.02562 * 20 11 10 38 38 H 1.09003 * 117.49941 * 145.02193 * 20 11 10 39 39 H 1.08998 * 117.49688 * 214.98294 * 21 11 10 40 40 H 1.09003 * 117.49409 * 359.97438 * 21 11 10 41 41 H 1.09005 * 115.55218 * 34.41114 * 22 3 2 42 42 H 1.09003 * 117.49708 * 359.97438 * 23 22 3 43 43 H 1.09002 * 117.50136 * 145.01789 * 23 22 3 44 44 H 1.09002 * 117.49508 * 252.50985 * 24 23 22 45 45 H 1.08999 * 117.49997 * 107.48906 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5342 1.1852 0.0614 5 6 1.5107 2.0860 1.2174 6 7 1.9973 1.4452 2.4417 7 16 1.9349 2.2584 3.8830 8 8 2.5496 3.5093 3.6065 9 8 2.5032 1.3542 4.8204 10 6 0.1627 2.4768 4.2031 11 6 -0.0332 3.0850 5.5932 12 6 0.5656 4.4532 5.7945 13 1 1.5474 4.5538 6.2333 14 6 -0.1398 5.5765 5.4184 15 7 -1.3500 5.4560 4.9179 16 14 0.6234 7.2696 5.6198 17 1 1.9828 7.1337 6.2018 18 1 0.7160 7.9317 4.2939 19 1 -0.2222 8.0893 6.5245 20 6 -0.0311 2.1301 6.7887 21 6 -1.3407 2.7717 6.3235 22 6 1.6079 2.0428 -1.2788 23 6 2.7046 2.3211 -2.3086 24 6 2.1352 3.4664 -1.4690 25 1 -0.3634 -1.0272 -0.0320 26 1 -0.3633 0.4858 0.9056 27 1 -0.3634 0.5413 -0.8736 28 1 3.8208 0.6599 0.9724 29 1 3.8900 0.6291 -0.8059 30 1 3.9775 2.1810 0.0618 31 1 0.4207 2.0956 1.2208 32 1 1.8829 3.1095 1.1705 33 1 2.3560 0.5446 2.4080 34 1 -0.2628 3.1425 3.4521 35 1 -0.3369 1.5093 4.1560 36 1 -1.8177 6.2385 4.5861 37 1 0.1102 1.0687 6.5849 38 1 0.4031 2.4916 7.7209 39 1 -1.7676 3.5551 6.9497 40 1 -2.0615 2.1327 5.8133 41 1 0.6087 1.8219 -1.6544 42 1 3.7129 1.9792 -2.0748 43 1 2.4273 2.2830 -3.3620 44 1 1.4832 4.1819 -1.9702 45 1 2.7688 3.8777 -0.6832 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451565514.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:06 Heat of formation + Delta-G solvation = -65.656370 kcal Electronic energy + Delta-G solvation = -26383.617451 eV Core-core repulsion = 22723.461514 eV Total energy + Delta-G solvation = -3660.155937 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.99274 -36.74605 -36.48557 -36.23377 -35.10325 -34.56823 -32.04118 -30.58613 -28.19415 -27.09920 -26.17633 -25.46237 -23.45103 -22.35474 -21.18469 -19.81747 -19.29528 -18.60961 -17.28009 -17.07860 -16.42218 -16.04232 -15.61860 -15.28105 -14.97265 -14.89754 -14.65835 -14.17474 -13.76896 -13.64754 -13.26755 -13.12977 -12.58063 -12.43182 -12.05876 -12.02743 -11.86788 -11.77460 -11.39170 -11.30214 -11.25647 -11.15547 -11.05857 -10.99149 -10.94833 -10.55599 -10.54225 -10.44174 -10.11910 -10.10805 -9.66852 -9.62282 -9.14931 -9.04820 -8.54158 -8.07628 -6.14801 -4.26390 1.08344 3.28695 3.32320 3.36448 3.45102 3.55233 3.83220 4.37055 4.38057 4.53963 4.62391 4.75436 4.78191 4.92283 4.99038 5.10339 5.15293 5.23251 5.28193 5.34167 5.43651 5.49343 5.57754 5.59864 5.66721 5.70107 5.77069 5.83134 5.92135 5.94942 5.98672 6.11975 6.19104 6.26614 6.36771 6.61345 6.73235 6.99164 7.07704 7.21524 7.32369 7.44222 7.78947 8.19342 8.80227 9.45943 10.92895 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014858 B = 0.004739 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.079694 B = 5907.535676 C = 6616.184654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.371 6.371 3 C 0.143 3.857 4 C -0.142 4.142 5 C 0.093 3.907 6 N -1.128 6.128 7 S 2.610 3.390 8 O -0.950 6.950 9 O -0.973 6.973 10 C -0.556 4.556 11 C 0.039 3.961 12 C -0.513 4.513 13 H 0.068 0.932 14 C 0.082 3.918 15 N -0.875 5.875 16 Si 0.891 3.109 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.283 1.283 20 C -0.208 4.208 21 C -0.136 4.136 22 C -0.184 4.184 23 C -0.174 4.174 24 C -0.174 4.174 25 H 0.085 0.915 26 H 0.050 0.950 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.412 0.588 34 H 0.128 0.872 35 H 0.099 0.901 36 H 0.262 0.738 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.774 -8.475 -13.652 16.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.290 6.290 3 C 0.102 3.898 4 C -0.199 4.199 5 C -0.034 4.034 6 N -0.885 5.885 7 S 2.706 3.294 8 O -0.939 6.939 9 O -0.963 6.963 10 C -0.689 4.689 11 C 0.037 3.963 12 C -0.551 4.551 13 H 0.086 0.914 14 C -0.123 4.123 15 N -0.511 5.511 16 Si 0.718 3.282 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.209 1.209 20 C -0.245 4.245 21 C -0.175 4.175 22 C -0.203 4.203 23 C -0.211 4.211 24 C -0.211 4.211 25 H 0.104 0.896 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.246 0.754 34 H 0.146 0.854 35 H 0.118 0.882 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.129 0.871 42 H 0.121 0.879 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.417 -8.067 -13.178 15.824 hybrid contribution -0.757 0.674 -0.344 1.070 sum 2.660 -7.393 -13.521 15.638 Atomic orbital electron populations 1.22864 0.81458 1.02718 1.00645 1.87966 1.19651 1.26583 1.94767 1.21090 0.94539 0.82938 0.91209 1.21876 0.91898 1.03039 1.03097 1.21812 0.99182 0.97904 0.84499 1.55923 1.79665 1.29770 1.23179 1.05057 0.78680 0.73607 0.72012 1.93526 1.73803 1.43570 1.83038 1.93507 1.76849 1.64994 1.60997 1.29981 1.22413 1.07194 1.09263 1.18288 1.00174 0.93837 0.84002 1.20587 1.02961 0.88184 1.43323 0.91357 1.24944 0.94065 0.99268 0.94034 1.70016 1.11144 1.30255 1.39685 0.86527 0.79853 0.83670 0.78137 1.19130 1.20543 1.20948 1.23181 1.03961 0.96871 1.00506 1.22520 0.89978 1.01160 1.03833 1.22841 0.99702 0.99562 0.98230 1.23109 0.98699 1.02915 0.96409 1.23045 1.03905 0.90808 1.03324 0.89647 0.93148 0.93738 0.91220 0.91330 0.90545 0.91445 0.89059 0.75381 0.85372 0.88241 0.92850 0.90845 0.89571 0.89341 0.91702 0.87105 0.87878 0.88952 0.88421 0.87955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.26 101.05 1.04 1.23 16 2 O -0.37 -4.39 10.15 -35.23 -0.36 -4.75 16 3 C 0.14 1.64 0.65 -90.62 -0.06 1.58 16 4 C -0.14 -1.54 7.21 37.16 0.27 -1.27 16 5 C 0.09 1.26 4.70 -4.04 -0.02 1.25 16 6 N -1.13 -17.06 5.29 -10.61 -0.06 -17.12 16 7 S 2.61 52.58 5.13 -107.50 -0.55 52.03 16 8 O -0.95 -22.30 17.05 -57.54 -0.98 -23.28 16 9 O -0.97 -21.59 18.08 -57.54 -1.04 -22.63 16 10 C -0.56 -11.52 5.94 37.15 0.22 -11.30 16 11 C 0.04 0.96 1.42 -155.66 -0.22 0.74 16 12 C -0.51 -14.03 7.99 -34.44 -0.28 -14.31 16 13 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 14 C 0.08 2.22 5.43 -17.82 -0.10 2.12 16 15 N -0.88 -23.93 12.73 55.43 0.71 -23.23 16 16 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 C -0.21 -4.60 9.95 -26.69 -0.27 -4.87 16 21 C -0.14 -3.11 9.25 -26.69 -0.25 -3.36 16 22 C -0.18 -1.85 5.14 -90.62 -0.47 -2.31 16 23 C -0.17 -1.52 9.57 -26.73 -0.26 -1.77 16 24 C -0.17 -1.68 9.32 -26.73 -0.25 -1.93 16 25 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.52 6.36 -51.93 -0.33 0.19 16 27 H 0.04 0.38 6.17 -51.93 -0.32 0.06 16 28 H 0.07 0.79 6.89 -51.93 -0.36 0.43 16 29 H 0.07 0.65 6.97 -51.93 -0.36 0.29 16 30 H 0.08 0.80 7.07 -51.93 -0.37 0.43 16 31 H 0.07 0.85 6.28 -51.93 -0.33 0.52 16 32 H 0.09 1.31 6.68 -51.92 -0.35 0.96 16 33 H 0.41 5.60 7.54 -34.47 -0.26 5.34 16 34 H 0.13 2.70 8.14 -51.92 -0.42 2.28 16 35 H 0.10 1.74 8.11 -51.92 -0.42 1.32 16 36 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 37 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.09 1.89 8.14 -51.93 -0.42 1.46 16 39 H 0.09 2.16 8.14 -51.93 -0.42 1.73 16 40 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 41 H 0.11 1.04 6.23 -51.93 -0.32 0.72 16 42 H 0.10 0.85 5.85 -51.93 -0.30 0.55 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.10 1.06 7.05 -51.93 -0.37 0.69 16 LS Contribution 368.61 15.07 5.55 5.55 Total: -1.00 -32.42 368.61 -9.39 -41.81 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -7.01 Total: 9.35 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: -0.63 Total: -34.20 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.65 Total: -40.35 kcal Atomic # 8 Polarization: -48.28 SS G_CDS: -2.38 Total: -50.66 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 52.58 SS G_CDS: -0.55 Total: 52.03 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.42 -9.39 -41.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451565514.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.845 kcal (2) G-P(sol) polarization free energy of solvation -32.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds