Wall clock time and date at job start Tue Mar 31 2020 12:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99753 * 2 1 4 4 C 1.52999 * 109.46814 * 177.56096 * 3 2 1 5 5 C 1.52999 * 109.47029 * 57.56244 * 3 2 1 6 6 N 1.46499 * 109.47500 * 64.99873 * 5 3 2 7 7 S 1.65598 * 120.00139 * 164.99739 * 6 5 3 8 8 O 1.42097 * 104.28024 * 308.92860 * 7 6 5 9 9 O 1.42100 * 104.27740 * 181.07192 * 7 6 5 10 10 C 1.81405 * 104.44994 * 65.00088 * 7 6 5 11 11 C 1.52993 * 109.46994 * 173.79012 * 10 7 6 12 12 C 1.50699 * 115.55350 * 62.02516 * 11 10 7 13 13 H 1.08007 * 119.99849 * 264.55839 * 12 11 10 14 14 C 1.37872 * 120.00112 * 84.55393 * 12 11 10 15 15 N 1.31508 * 120.00000 * 1.85722 * 14 12 11 16 16 Si 1.86806 * 119.99957 * 181.86241 * 14 12 11 17 17 H 1.48498 * 109.47068 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47241 * 120.00110 * 16 14 12 19 19 H 1.48505 * 109.46869 * 239.99994 * 16 14 12 20 20 C 1.53004 * 117.49875 * 276.34865 * 11 10 7 21 21 C 1.53010 * 117.49794 * 207.69349 * 11 10 7 22 22 C 1.52995 * 109.47230 * 297.56068 * 3 2 1 23 23 C 1.52995 * 117.50020 * 248.70126 * 22 3 2 24 24 C 1.52999 * 60.00151 * 252.51037 * 23 22 3 25 25 H 1.09006 * 109.47261 * 178.21739 * 1 2 3 26 26 H 1.09004 * 109.47105 * 298.21255 * 1 2 3 27 27 H 1.09005 * 109.47610 * 58.21514 * 1 2 3 28 28 H 1.08996 * 109.47037 * 299.99716 * 4 3 2 29 29 H 1.08994 * 109.47115 * 59.99950 * 4 3 2 30 30 H 1.09004 * 109.47100 * 180.02562 * 4 3 2 31 31 H 1.09007 * 109.47551 * 304.99450 * 5 3 2 32 32 H 1.09007 * 109.46817 * 184.99823 * 5 3 2 33 33 H 0.97003 * 119.99581 * 345.00194 * 6 5 3 34 34 H 1.09000 * 109.46833 * 293.78816 * 10 7 6 35 35 H 1.09000 * 109.46941 * 53.78879 * 10 7 6 36 36 H 0.97010 * 120.00069 * 185.01145 * 15 14 12 37 37 H 1.08999 * 117.50168 * 0.02562 * 20 11 10 38 38 H 1.09003 * 117.49941 * 145.02193 * 20 11 10 39 39 H 1.08998 * 117.49688 * 214.98294 * 21 11 10 40 40 H 1.09003 * 117.49409 * 359.97438 * 21 11 10 41 41 H 1.09005 * 115.55218 * 34.41114 * 22 3 2 42 42 H 1.09003 * 117.49708 * 359.97438 * 23 22 3 43 43 H 1.09002 * 117.50136 * 145.01789 * 23 22 3 44 44 H 1.09002 * 117.49508 * 252.50985 * 24 23 22 45 45 H 1.08999 * 117.49997 * 107.48906 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5342 1.1852 0.0614 5 6 1.5107 2.0860 1.2174 6 7 1.9973 1.4452 2.4417 7 16 1.9349 2.2584 3.8830 8 8 2.5496 3.5093 3.6065 9 8 2.5032 1.3542 4.8204 10 6 0.1627 2.4768 4.2031 11 6 -0.0332 3.0850 5.5932 12 6 0.5656 4.4532 5.7945 13 1 1.5474 4.5538 6.2333 14 6 -0.1398 5.5765 5.4184 15 7 -1.3500 5.4560 4.9179 16 14 0.6234 7.2696 5.6198 17 1 1.9828 7.1337 6.2018 18 1 0.7160 7.9317 4.2939 19 1 -0.2222 8.0893 6.5245 20 6 -0.0311 2.1301 6.7887 21 6 -1.3407 2.7717 6.3235 22 6 1.6079 2.0428 -1.2788 23 6 2.7046 2.3211 -2.3086 24 6 2.1352 3.4664 -1.4690 25 1 -0.3634 -1.0272 -0.0320 26 1 -0.3633 0.4858 0.9056 27 1 -0.3634 0.5413 -0.8736 28 1 3.8208 0.6599 0.9724 29 1 3.8900 0.6291 -0.8059 30 1 3.9775 2.1810 0.0618 31 1 0.4207 2.0956 1.2208 32 1 1.8829 3.1095 1.1705 33 1 2.3560 0.5446 2.4080 34 1 -0.2628 3.1425 3.4521 35 1 -0.3369 1.5093 4.1560 36 1 -1.8177 6.2385 4.5861 37 1 0.1102 1.0687 6.5849 38 1 0.4031 2.4916 7.7209 39 1 -1.7676 3.5551 6.9497 40 1 -2.0615 2.1327 5.8133 41 1 0.6087 1.8219 -1.6544 42 1 3.7129 1.9792 -2.0748 43 1 2.4273 2.2830 -3.3620 44 1 1.4832 4.1819 -1.9702 45 1 2.7688 3.8777 -0.6832 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451565514.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:05 Heat of formation + Delta-G solvation = -87.944458 kcal Electronic energy + Delta-G solvation = -26384.583935 eV Core-core repulsion = 22723.461514 eV Total energy + Delta-G solvation = -3661.122421 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.85677 -38.56900 -37.94717 -37.26863 -36.80255 -35.75535 -34.08773 -31.50941 -29.88685 -28.06051 -27.49890 -26.99461 -24.34910 -23.07969 -22.97604 -21.55586 -20.46763 -19.98458 -18.51473 -18.43546 -18.02779 -17.26172 -16.88328 -16.72730 -16.44446 -16.18561 -15.93770 -15.64623 -15.30612 -14.90466 -14.49632 -14.17232 -13.82140 -13.71889 -13.57338 -13.32219 -13.10408 -13.01870 -12.91336 -12.88356 -12.85464 -12.73610 -12.50863 -12.44425 -12.21166 -12.05630 -11.91021 -11.88268 -11.49866 -11.26813 -10.99850 -10.92664 -10.59655 -10.50677 -10.36597 -9.85935 -8.20692 -6.36080 -0.52197 1.35741 1.39444 1.50992 2.00393 2.39253 2.63568 2.93661 3.04084 3.07137 3.36493 3.43139 3.62454 3.70483 3.87312 3.96568 4.04144 4.17384 4.23665 4.28297 4.42332 4.50340 4.54433 4.58264 4.60002 4.69695 4.71905 4.80941 4.84489 4.86916 4.96791 4.97980 5.01636 5.06663 5.14855 5.21259 5.28376 5.37050 5.43324 5.61424 5.70041 6.11176 6.21187 6.26288 6.70952 7.37264 8.86679 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014858 B = 0.004739 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.079694 B = 5907.535676 C = 6616.184654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.381 6.381 3 C 0.148 3.852 4 C -0.147 4.147 5 C 0.083 3.917 6 N -1.109 6.109 7 S 2.626 3.374 8 O -0.989 6.989 9 O -0.996 6.996 10 C -0.552 4.552 11 C 0.007 3.993 12 C -0.532 4.532 13 H 0.047 0.953 14 C 0.045 3.955 15 N -0.891 5.891 16 Si 0.932 3.068 17 H -0.275 1.275 18 H -0.273 1.273 19 H -0.272 1.272 20 C -0.197 4.197 21 C -0.132 4.132 22 C -0.191 4.191 23 C -0.162 4.162 24 C -0.183 4.183 25 H 0.100 0.900 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.422 0.578 34 H 0.122 0.878 35 H 0.134 0.866 36 H 0.265 0.735 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.120 0.880 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.349 -9.540 -15.221 18.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.300 6.300 3 C 0.107 3.893 4 C -0.204 4.204 5 C -0.043 4.043 6 N -0.870 5.870 7 S 2.723 3.277 8 O -0.979 6.979 9 O -0.986 6.986 10 C -0.685 4.685 11 C 0.005 3.995 12 C -0.569 4.569 13 H 0.065 0.935 14 C -0.158 4.158 15 N -0.528 5.528 16 Si 0.757 3.243 17 H -0.200 1.200 18 H -0.199 1.199 19 H -0.197 1.197 20 C -0.235 4.235 21 C -0.171 4.171 22 C -0.210 4.210 23 C -0.198 4.198 24 C -0.220 4.220 25 H 0.119 0.881 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.259 0.741 34 H 0.140 0.860 35 H 0.152 0.848 36 H 0.075 0.925 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.137 0.863 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.991 -9.137 -14.736 17.595 hybrid contribution -0.629 0.965 0.131 1.159 sum 2.362 -8.172 -14.605 16.902 Atomic orbital electron populations 1.23045 0.80508 1.03946 1.00981 1.87956 1.20762 1.26499 1.94796 1.21028 0.94705 0.82852 0.90748 1.21936 0.91739 1.03235 1.03452 1.22066 0.99963 0.97715 0.84572 1.55397 1.79515 1.29930 1.22188 1.04289 0.78201 0.72782 0.72449 1.93476 1.74723 1.45809 1.83880 1.93464 1.77331 1.65213 1.62620 1.29868 1.23088 1.08597 1.06963 1.18432 1.01293 0.93505 0.86298 1.20737 1.02337 0.90363 1.43471 0.93479 1.25469 0.94578 1.01661 0.94094 1.70047 1.11552 1.31014 1.40158 0.85901 0.78934 0.80989 0.78448 1.19965 1.19858 1.19745 1.23236 1.02955 0.97813 0.99456 1.22458 0.90230 1.00969 1.03446 1.22831 1.00666 0.99529 0.98016 1.23202 0.98455 1.01322 0.96854 1.23071 1.04257 0.91075 1.03601 0.88142 0.93704 0.92450 0.92000 0.89768 0.90546 0.90318 0.90189 0.74139 0.85956 0.84800 0.92539 0.88354 0.90096 0.91527 0.89458 0.86261 0.87454 0.87416 0.87663 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 10.26 113.37 1.16 1.35 16 2 O -0.38 -8.19 10.15 -148.98 -1.51 -9.70 16 3 C 0.15 3.15 0.65 -10.80 -0.01 3.14 16 4 C -0.15 -2.98 7.21 71.98 0.52 -2.46 16 5 C 0.08 2.18 4.70 86.38 0.41 2.59 16 6 N -1.11 -32.46 5.29 -187.48 -0.99 -33.45 16 7 S 2.63 104.94 5.13 -56.49 -0.29 104.66 16 8 O -0.99 -47.22 17.05 -127.65 -2.18 -49.40 16 9 O -1.00 -43.66 18.08 -127.65 -2.31 -45.97 16 10 C -0.55 -22.31 5.94 71.98 0.43 -21.88 16 11 C 0.01 0.33 1.42 -52.93 -0.08 0.26 16 12 C -0.53 -29.45 7.99 25.60 0.20 -29.25 16 13 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 14 C 0.04 2.45 5.43 84.65 0.46 2.91 16 15 N -0.89 -48.67 12.73 21.44 0.27 -48.40 16 16 Si 0.93 44.16 29.54 68.60 2.03 46.19 16 17 H -0.27 -13.25 7.11 99.48 0.71 -12.55 16 18 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 20 C -0.20 -8.52 9.95 30.62 0.30 -8.21 16 21 C -0.13 -5.92 9.25 30.62 0.28 -5.64 16 22 C -0.19 -3.46 5.14 -10.80 -0.06 -3.51 16 23 C -0.16 -2.44 9.57 30.59 0.29 -2.15 16 24 C -0.18 -3.29 9.32 30.59 0.29 -3.01 16 25 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 26 H 0.04 0.82 6.36 -2.39 -0.02 0.80 16 27 H 0.06 0.84 6.17 -2.38 -0.01 0.82 16 28 H 0.06 1.33 6.89 -2.39 -0.02 1.32 16 29 H 0.08 1.43 6.97 -2.39 -0.02 1.41 16 30 H 0.08 1.53 7.07 -2.38 -0.02 1.52 16 31 H 0.08 1.88 6.28 -2.38 -0.01 1.86 16 32 H 0.08 2.29 6.68 -2.38 -0.02 2.28 16 33 H 0.42 10.91 7.54 -96.74 -0.73 10.18 16 34 H 0.12 5.09 8.14 -2.39 -0.02 5.07 16 35 H 0.13 4.36 8.11 -2.39 -0.02 4.34 16 36 H 0.27 13.71 8.32 -92.70 -0.77 12.94 16 37 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 38 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 39 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 40 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 41 H 0.12 1.94 6.23 -2.38 -0.01 1.93 16 42 H 0.11 1.53 5.85 -2.39 -0.01 1.51 16 43 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.09 1.84 7.05 -2.39 -0.02 1.82 16 Total: -1.00 -68.68 368.61 -0.50 -69.18 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: 0.27 Total: 32.75 kcal Atomic # 6 Polarization: -70.07 SS G_CDS: 4.21 Total: -65.86 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -0.72 Total: -81.84 kcal Atomic # 8 Polarization: -99.07 SS G_CDS: -6.00 Total: -105.06 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: 104.94 SS G_CDS: -0.29 Total: 104.66 kcal Total: -68.68 -0.50 -69.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451565514.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.765 kcal (2) G-P(sol) polarization free energy of solvation -68.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds