Wall clock time and date at job start Tue Mar 31 2020 12:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.06028 * 2 1 4 4 C 1.54274 * 110.03225 * 121.41137 * 2 1 3 5 5 C 1.55029 * 104.28110 * 95.76445 * 4 2 1 6 6 C 1.54889 * 102.68278 * 37.76937 * 5 4 2 7 7 C 1.53875 * 110.03539 * 238.57583 * 2 1 3 8 8 O 1.42903 * 110.02963 * 0.02562 * 7 2 1 9 9 C 1.52992 * 110.07094 * 121.40899 * 7 2 1 10 10 N 1.46507 * 109.46914 * 178.64791 * 9 7 2 11 11 S 1.65601 * 120.00052 * 165.00146 * 10 9 7 12 12 O 1.42100 * 104.27631 * 181.06864 * 11 10 9 13 13 O 1.42098 * 104.27775 * 308.93016 * 11 10 9 14 14 C 1.81400 * 104.44948 * 64.99755 * 11 10 9 15 15 C 1.53002 * 109.47180 * 173.86061 * 14 11 10 16 16 C 1.50701 * 115.54511 * 39.92359 * 15 14 11 17 17 H 1.08001 * 120.00086 * 264.79054 * 16 15 14 18 18 C 1.37873 * 120.00200 * 84.79597 * 16 15 14 19 19 N 1.31514 * 120.00135 * 353.00026 * 18 16 15 20 20 Si 1.86802 * 120.00124 * 173.00006 * 18 16 15 21 21 H 1.48493 * 109.47183 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46913 * 119.99858 * 20 18 16 23 23 H 1.48498 * 109.47477 * 239.99696 * 20 18 16 24 24 C 1.53003 * 117.50246 * 254.21476 * 15 14 11 25 25 C 1.53001 * 117.50183 * 185.58976 * 15 14 11 26 26 H 1.08999 * 109.47200 * 181.42001 * 1 2 3 27 27 H 1.09002 * 109.47085 * 301.42256 * 1 2 3 28 28 H 1.09003 * 109.47050 * 61.42026 * 1 2 3 29 29 H 1.08996 * 110.48443 * 214.35936 * 4 2 1 30 30 H 1.09007 * 110.48169 * 336.86044 * 4 2 1 31 31 H 1.08995 * 110.69545 * 279.51819 * 5 4 2 32 32 H 1.08993 * 110.87276 * 156.10243 * 5 4 2 33 33 H 1.08996 * 110.48658 * 203.48415 * 6 5 4 34 34 H 1.09001 * 110.48483 * 80.96762 * 6 5 4 35 35 H 0.96692 * 113.99727 * 181.38090 * 8 7 2 36 36 H 1.09003 * 109.47792 * 298.64729 * 9 7 2 37 37 H 1.08998 * 109.47337 * 58.65139 * 9 7 2 38 38 H 0.96999 * 119.99960 * 345.00000 * 10 9 7 39 39 H 1.09003 * 109.47473 * 293.86171 * 14 11 10 40 40 H 1.09006 * 109.46887 * 53.86394 * 14 11 10 41 41 H 0.97002 * 120.00473 * 185.02330 * 19 18 16 42 42 H 1.09000 * 117.49484 * 359.97438 * 24 15 14 43 43 H 1.08997 * 117.49586 * 145.02177 * 24 15 14 44 44 H 1.08992 * 117.50139 * 214.98305 * 25 15 14 45 45 H 1.09003 * 117.49699 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7554 1.2370 5 6 2.3312 -2.1914 0.7205 6 6 2.8874 -1.9408 -0.7032 7 6 2.0571 -0.7537 -1.2336 8 8 0.9635 -1.2328 -2.0188 9 6 2.9406 0.1694 -2.0750 10 7 3.4610 -0.5700 -3.2277 11 16 4.1335 0.2477 -4.5011 12 8 4.4947 -0.7729 -5.4215 13 8 3.1630 1.2292 -4.8391 14 6 5.6145 1.0305 -3.8050 15 6 6.4136 1.6976 -4.9263 16 6 5.5951 2.4038 -5.9762 17 1 5.3321 1.8923 -6.8903 18 6 5.1820 3.7029 -5.7700 19 7 5.3820 4.2794 -4.6049 20 14 4.3383 4.6443 -7.1453 21 1 4.2334 3.7776 -8.3465 22 1 2.9783 5.0483 -6.7067 23 1 5.1319 5.8552 -7.4757 24 6 7.7040 1.0113 -5.3791 25 6 7.7706 2.3036 -4.5626 26 1 -0.3633 -1.0273 0.0255 27 1 -0.3633 0.5358 0.8770 28 1 -0.3633 0.4916 -0.9025 29 1 2.9810 -0.2999 1.5967 30 1 1.3069 -0.7673 2.0265 31 1 1.4069 -2.7676 0.6782 32 1 3.0726 -2.6934 1.3420 33 1 2.7401 -2.8199 -1.3306 34 1 3.9442 -1.6776 -0.6590 35 1 1.2309 -1.7352 -2.8004 36 1 2.3516 1.0179 -2.4235 37 1 3.7719 0.5289 -1.4685 38 1 3.4117 -1.5386 -3.2451 39 1 5.3184 1.7820 -3.0731 40 1 6.2313 0.2739 -3.3198 41 1 5.0275 5.1663 -4.4354 42 1 7.9837 0.0847 -4.8778 43 1 7.9610 1.0704 -6.4367 44 1 8.0716 3.2127 -5.0831 45 1 8.0943 2.2266 -3.5246 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451605534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:12 Heat of formation + Delta-G solvation = -116.670472 kcal Electronic energy + Delta-G solvation = -26313.889608 eV Core-core repulsion = 22651.521533 eV Total energy + Delta-G solvation = -3662.368075 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.86715 -36.73805 -36.12220 -35.35325 -34.90994 -34.15086 -32.05373 -31.19771 -28.61706 -28.19588 -26.07057 -25.46696 -23.52553 -21.21640 -21.03882 -19.86446 -19.44689 -18.54805 -17.29705 -16.62498 -16.18601 -16.10945 -15.58350 -15.11268 -14.97564 -14.64739 -14.17154 -13.84315 -13.68485 -13.56129 -13.09387 -13.05683 -12.70676 -12.50162 -12.23130 -12.04657 -11.79631 -11.61076 -11.37354 -11.14512 -11.13548 -11.01055 -10.98621 -10.88779 -10.73557 -10.67398 -10.51132 -10.45170 -10.35808 -10.12703 -9.86543 -9.72697 -9.24182 -8.91300 -8.55151 -8.12313 -6.16743 -4.31139 1.17460 3.31276 3.40452 3.45419 3.56056 4.06643 4.32185 4.39882 4.42773 4.57280 4.71584 4.98037 5.04979 5.13698 5.14523 5.19067 5.21732 5.32842 5.42322 5.45921 5.51874 5.60902 5.68916 5.77999 5.80540 5.82993 5.88184 5.96017 6.02663 6.08529 6.17032 6.20696 6.29812 6.34251 6.40663 6.60298 6.68540 6.93812 7.15453 7.22946 7.38090 7.63847 7.78489 8.17844 8.77983 9.46257 10.90974 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017537 B = 0.004292 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.263302 B = 6521.929376 C = 6971.026285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.085 4.085 3 H 0.083 0.917 4 C -0.122 4.122 5 C -0.119 4.119 6 C -0.153 4.153 7 C 0.130 3.870 8 O -0.547 6.547 9 C 0.094 3.906 10 N -1.138 6.138 11 S 2.625 3.375 12 O -0.976 6.976 13 O -0.939 6.939 14 C -0.560 4.560 15 C 0.050 3.950 16 C -0.542 4.542 17 H 0.069 0.931 18 C 0.098 3.902 19 N -0.867 5.867 20 Si 0.893 3.107 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.283 1.283 24 C -0.204 4.204 25 C -0.144 4.144 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.374 0.626 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.404 0.596 39 H 0.126 0.874 40 H 0.096 0.904 41 H 0.264 0.736 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.742 -10.373 12.571 16.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.104 4.104 3 H 0.101 0.899 4 C -0.159 4.159 5 C -0.157 4.157 6 C -0.191 4.191 7 C 0.088 3.912 8 O -0.353 6.353 9 C -0.033 4.033 10 N -0.895 5.895 11 S 2.721 3.279 12 O -0.967 6.967 13 O -0.929 6.929 14 C -0.692 4.692 15 C 0.048 3.952 16 C -0.580 4.580 17 H 0.088 0.912 18 C -0.110 4.110 19 N -0.501 5.501 20 Si 0.719 3.281 21 H -0.192 1.192 22 H -0.203 1.203 23 H -0.209 1.209 24 C -0.242 4.242 25 C -0.183 4.183 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.222 0.778 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.236 0.764 39 H 0.144 0.856 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.446 -9.646 12.259 16.522 hybrid contribution 0.476 0.057 -0.415 0.634 sum -4.970 -9.589 11.844 16.029 Atomic orbital electron populations 1.21512 0.93706 1.02099 1.01242 1.21767 0.97470 0.99114 0.92034 0.89865 1.22493 1.01010 0.95433 0.96969 1.22441 1.00797 0.96863 0.95594 1.23109 1.00320 0.98246 0.97435 1.21990 0.86003 0.92602 0.90644 1.86566 1.32877 1.74740 1.41078 1.22018 0.97807 0.95725 0.87758 1.56156 1.78077 1.18151 1.37086 1.04625 0.76635 0.73769 0.72828 1.93486 1.85422 1.57949 1.59832 1.93535 1.57464 1.61376 1.80500 1.29971 1.18479 1.10233 1.10559 1.18186 0.86295 0.97601 0.93157 1.20629 1.35770 0.98412 1.03141 0.91241 1.24892 0.93613 0.96860 0.95599 1.69955 1.42824 1.15531 1.21825 0.86510 0.79442 0.79573 0.82544 1.19206 1.20278 1.20854 1.23126 1.05845 0.95389 0.99793 1.22528 1.02806 0.95492 0.97478 0.92322 0.93410 0.91983 0.91356 0.91216 0.91333 0.91581 0.91012 0.90302 0.77848 0.89222 0.91213 0.76360 0.85560 0.88571 0.92592 0.91286 0.89677 0.89635 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 8.08 37.16 0.30 -1.05 16 2 C -0.08 -0.88 3.16 -89.50 -0.28 -1.16 16 3 H 0.08 0.86 7.67 -51.93 -0.40 0.46 16 4 C -0.12 -1.03 6.37 -24.99 -0.16 -1.19 16 5 C -0.12 -1.00 6.92 -24.66 -0.17 -1.17 16 6 C -0.15 -1.42 5.28 -25.07 -0.13 -1.55 16 7 C 0.13 1.44 1.02 -89.50 -0.09 1.35 16 8 O -0.55 -6.54 11.12 -35.23 -0.39 -6.93 16 9 C 0.09 1.25 4.90 -4.04 -0.02 1.23 16 10 N -1.14 -16.47 5.36 -10.61 -0.06 -16.52 16 11 S 2.62 53.86 4.63 -107.50 -0.50 53.36 16 12 O -0.98 -22.15 18.08 -57.54 -1.04 -23.19 16 13 O -0.94 -23.06 16.63 -57.54 -0.96 -24.02 16 14 C -0.56 -11.54 6.18 37.16 0.23 -11.31 16 15 C 0.05 1.20 1.64 -155.66 -0.26 0.95 16 16 C -0.54 -14.85 6.89 -34.44 -0.24 -15.09 16 17 H 0.07 1.96 7.82 -52.49 -0.41 1.55 16 18 C 0.10 2.68 5.39 -17.82 -0.10 2.59 16 19 N -0.87 -23.89 12.96 55.43 0.72 -23.17 16 20 Si 0.89 21.92 29.55 -169.99 -5.02 16.90 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C -0.20 -4.42 9.88 -26.73 -0.26 -4.68 16 25 C -0.14 -3.26 9.50 -26.73 -0.25 -3.52 16 26 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.74 7.87 -51.93 -0.41 0.33 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.54 7.84 -51.92 -0.41 0.13 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 34 H 0.08 0.71 7.85 -51.93 -0.41 0.31 16 35 H 0.37 3.77 8.22 45.56 0.37 4.14 16 36 H 0.09 1.38 7.69 -51.93 -0.40 0.98 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.40 4.77 7.58 -34.47 -0.26 4.51 16 39 H 0.13 2.62 8.14 -51.92 -0.42 2.19 16 40 H 0.10 1.64 7.95 -51.92 -0.41 1.23 16 41 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 42 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 43 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 44 H 0.09 2.05 8.14 -51.93 -0.42 1.62 16 45 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 370.95 15.07 5.59 5.59 Total: -1.00 -32.99 370.95 -10.01 -43.00 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -6.92 Total: 9.58 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: -1.43 Total: -34.59 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.66 Total: -39.70 kcal Atomic # 8 Polarization: -51.75 SS G_CDS: -2.39 Total: -54.14 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 53.86 SS G_CDS: -0.50 Total: 53.36 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.99 -10.01 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451605534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.669 kcal (2) G-P(sol) polarization free energy of solvation -32.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds