Wall clock time and date at job start Tue Mar 31 2020 12:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 110.05685 * 2 1 4 4 C 1.54272 * 110.02874 * 238.58733 * 2 1 3 5 5 C 1.54888 * 104.19278 * 264.32557 * 4 2 1 6 6 C 1.54892 * 102.75141 * 322.05840 * 5 4 2 7 7 C 1.53874 * 110.03354 * 121.42133 * 2 1 3 8 8 O 1.42899 * 110.03028 * 359.97438 * 7 2 1 9 9 C 1.53001 * 110.03093 * 238.56662 * 7 2 1 10 10 N 1.46498 * 109.47048 * 186.37617 * 9 7 2 11 11 S 1.65601 * 119.99991 * 165.00143 * 10 9 7 12 12 O 1.42101 * 104.27614 * 181.07400 * 11 10 9 13 13 O 1.42096 * 104.27381 * 308.92689 * 11 10 9 14 14 C 1.81391 * 104.45008 * 65.00057 * 11 10 9 15 15 C 1.53001 * 109.47345 * 173.81215 * 14 11 10 16 16 C 1.50704 * 115.54893 * 65.19102 * 15 14 11 17 17 H 1.07998 * 120.00077 * 264.78558 * 16 15 14 18 18 C 1.37878 * 119.99294 * 84.78683 * 16 15 14 19 19 N 1.31508 * 120.00394 * 352.23187 * 18 16 15 20 20 Si 1.86804 * 119.99508 * 172.23066 * 18 16 15 21 21 H 1.48497 * 109.47218 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46701 * 120.00173 * 20 18 16 23 23 H 1.48502 * 109.47298 * 239.99934 * 20 18 16 24 24 C 1.52998 * 117.49963 * 279.52866 * 15 14 11 25 25 C 1.52995 * 117.50181 * 210.86816 * 15 14 11 26 26 H 1.08994 * 109.47288 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46564 * 299.96363 * 1 2 3 28 28 H 1.09003 * 109.47092 * 59.95653 * 1 2 3 29 29 H 1.09002 * 110.48413 * 145.65046 * 4 2 1 30 30 H 1.08997 * 110.48410 * 23.00256 * 4 2 1 31 31 H 1.09003 * 110.76024 * 80.37311 * 5 4 2 32 32 H 1.09002 * 110.75758 * 203.74374 * 5 4 2 33 33 H 1.08995 * 110.48671 * 156.62029 * 6 5 4 34 34 H 1.09003 * 110.48575 * 279.26599 * 6 5 4 35 35 H 0.96705 * 114.00189 * 178.62176 * 8 7 2 36 36 H 1.08999 * 109.47164 * 306.38125 * 9 7 2 37 37 H 1.09003 * 109.47064 * 66.37916 * 9 7 2 38 38 H 0.97006 * 120.00015 * 345.00382 * 10 9 7 39 39 H 1.08998 * 109.47556 * 293.81173 * 14 11 10 40 40 H 1.09004 * 109.47143 * 53.81575 * 14 11 10 41 41 H 0.97009 * 119.99805 * 185.01491 * 19 18 16 42 42 H 1.09003 * 117.50227 * 359.97438 * 24 15 14 43 43 H 1.08995 * 117.50124 * 145.01497 * 24 15 14 44 44 H 1.09005 * 117.49800 * 214.97885 * 25 15 14 45 45 H 1.09007 * 117.49886 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0584 -0.7554 -1.2370 5 6 2.3280 -2.1901 -0.7193 6 6 2.8875 -1.9408 0.7034 7 6 2.0572 -0.7536 1.2336 8 8 0.9635 -1.2326 2.0188 9 6 2.9410 0.1702 2.0741 10 7 3.5575 -0.5976 3.1588 11 16 4.8379 0.0349 3.9971 12 8 5.1795 -0.9789 4.9324 13 8 5.7527 0.4385 2.9875 14 6 4.1509 1.4816 4.8489 15 6 5.2067 2.0702 5.7868 16 6 6.4271 2.6434 5.1136 17 1 7.3147 2.0388 4.9989 18 6 6.4104 3.9397 4.6441 19 7 5.2879 4.6247 4.6443 20 14 7.9825 4.7228 4.0077 21 1 9.0986 3.7490 4.1136 22 1 7.8005 5.1138 2.5867 23 1 8.2978 5.9278 4.8162 24 6 5.4017 1.3929 7.1448 25 6 4.7145 2.7581 7.0617 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5133 0.8903 28 1 -0.3633 0.5145 -0.8896 29 1 2.9811 -0.3000 -1.5967 30 1 1.3060 -0.7695 -2.0255 31 1 1.4030 -2.7652 -0.6753 32 1 3.0674 -2.6931 -1.3425 33 1 2.7401 -2.8198 1.3307 34 1 3.9440 -1.6768 0.6569 35 1 1.2309 -1.7351 2.8006 36 1 3.7202 0.5994 1.4442 37 1 2.3327 0.9705 2.4956 38 1 3.2156 -1.4766 3.3859 39 1 3.8594 2.2316 4.1138 40 1 3.2775 1.1815 5.4279 41 1 5.2596 5.5096 4.2477 42 1 4.7776 0.5282 7.3703 43 1 6.4125 1.3623 7.5514 44 1 5.2736 3.6252 7.4137 45 1 3.6384 2.7918 7.2321 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451605535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:16 Heat of formation + Delta-G solvation = -116.891150 kcal Electronic energy + Delta-G solvation = -26197.041763 eV Core-core repulsion = 22534.664119 eV Total energy + Delta-G solvation = -3662.377644 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.89731 -36.77536 -36.28452 -35.40639 -35.11495 -34.23317 -32.06265 -31.19032 -28.64006 -28.18569 -26.06974 -25.47469 -23.55084 -21.23292 -21.00566 -19.92447 -19.48545 -18.66119 -17.41927 -16.64453 -16.24997 -16.18156 -15.52537 -15.21476 -15.00590 -14.70204 -14.24792 -13.98148 -13.75977 -13.52974 -13.14344 -13.07455 -12.71889 -12.51711 -12.13135 -11.96864 -11.85379 -11.69592 -11.35960 -11.31444 -11.18195 -11.12072 -11.03741 -10.96456 -10.73363 -10.67322 -10.59159 -10.48942 -10.44281 -10.14161 -9.97969 -9.74158 -9.26050 -8.97197 -8.59186 -8.11425 -6.16028 -4.26519 1.03559 3.27049 3.34999 3.39232 3.42321 4.01348 4.32872 4.35664 4.41445 4.49842 4.61656 4.97319 5.01789 5.11742 5.16317 5.20176 5.22074 5.25555 5.43705 5.45913 5.47180 5.63227 5.71877 5.74794 5.81419 5.84783 5.86919 5.94502 6.00823 6.09680 6.13990 6.19382 6.24775 6.35234 6.37258 6.59232 6.70288 6.96482 7.12287 7.23406 7.37309 7.54396 7.78727 8.18406 8.79422 9.44827 10.91683 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016422 B = 0.004239 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.615950 B = 6604.073323 C = 7142.793658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.085 4.085 3 H 0.083 0.917 4 C -0.122 4.122 5 C -0.120 4.120 6 C -0.151 4.151 7 C 0.130 3.870 8 O -0.548 6.548 9 C 0.093 3.907 10 N -1.133 6.133 11 S 2.608 3.392 12 O -0.974 6.974 13 O -0.949 6.949 14 C -0.553 4.553 15 C 0.042 3.958 16 C -0.515 4.515 17 H 0.069 0.931 18 C 0.082 3.918 19 N -0.875 5.875 20 Si 0.892 3.108 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.282 1.282 24 C -0.208 4.208 25 C -0.141 4.141 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.371 0.629 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.404 0.596 39 H 0.133 0.867 40 H 0.099 0.901 41 H 0.263 0.737 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.154 -10.028 -8.222 16.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.104 4.104 3 H 0.102 0.898 4 C -0.160 4.160 5 C -0.158 4.158 6 C -0.189 4.189 7 C 0.088 3.912 8 O -0.354 6.354 9 C -0.034 4.034 10 N -0.890 5.890 11 S 2.705 3.295 12 O -0.965 6.965 13 O -0.939 6.939 14 C -0.686 4.686 15 C 0.040 3.960 16 C -0.552 4.552 17 H 0.087 0.913 18 C -0.123 4.123 19 N -0.510 5.510 20 Si 0.719 3.281 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.208 1.208 24 C -0.245 4.245 25 C -0.180 4.180 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.219 0.781 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.237 0.763 39 H 0.151 0.849 40 H 0.118 0.882 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.614 -9.700 -8.771 16.231 hybrid contribution 0.314 0.381 0.370 0.617 sum -9.300 -9.319 -8.401 15.617 Atomic orbital electron populations 1.21512 0.93736 1.02157 1.01055 1.21773 0.97321 0.99178 0.92124 0.89828 1.22477 1.01123 0.95480 0.96891 1.22435 1.00734 0.96848 0.95775 1.23077 1.00666 0.97927 0.97184 1.22009 0.85723 0.92823 0.90666 1.86594 1.33134 1.74648 1.41032 1.22052 0.97453 0.94432 0.89475 1.55977 1.55437 1.29188 1.48369 1.05125 0.73596 0.76233 0.74499 1.93506 1.81821 1.56667 1.64490 1.93532 1.59473 1.83834 1.57067 1.29964 1.08638 1.17542 1.12469 1.18296 0.93991 0.98914 0.84834 1.20565 0.97215 0.97809 1.39648 0.91300 1.24954 0.96365 0.96645 0.94347 1.69986 1.25558 1.12577 1.42879 0.86519 0.83772 0.79243 0.78565 1.19217 1.20630 1.20823 1.23196 1.01326 0.95693 1.04315 1.22554 0.97472 0.94471 1.03536 0.92267 0.92206 0.93376 0.91167 0.91214 0.91396 0.91549 0.91096 0.89989 0.78119 0.89193 0.90909 0.76325 0.84895 0.88241 0.92763 0.90691 0.89515 0.89577 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.08 37.16 0.30 -0.95 16 2 C -0.08 -0.87 3.16 -89.50 -0.28 -1.15 16 3 H 0.08 0.86 7.67 -51.93 -0.40 0.46 16 4 C -0.12 -1.11 6.37 -25.07 -0.16 -1.27 16 5 C -0.12 -1.09 6.91 -24.74 -0.17 -1.26 16 6 C -0.15 -1.55 5.45 -25.07 -0.14 -1.69 16 7 C 0.13 1.41 1.02 -89.50 -0.09 1.32 16 8 O -0.55 -5.70 11.12 -35.23 -0.39 -6.09 16 9 C 0.09 1.21 4.93 -4.04 -0.02 1.19 16 10 N -1.13 -15.67 5.41 -10.61 -0.06 -15.73 16 11 S 2.61 50.81 5.19 -107.50 -0.56 50.25 16 12 O -0.97 -20.79 18.08 -57.54 -1.04 -21.83 16 13 O -0.95 -21.99 17.16 -57.54 -0.99 -22.97 16 14 C -0.55 -11.37 5.93 37.16 0.22 -11.15 16 15 C 0.04 1.01 1.32 -155.66 -0.21 0.81 16 16 C -0.52 -13.98 8.18 -34.44 -0.28 -14.26 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C 0.08 2.21 5.38 -17.82 -0.10 2.12 16 19 N -0.87 -23.84 12.98 55.43 0.72 -23.12 16 20 Si 0.89 21.26 29.55 -169.99 -5.02 16.24 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C -0.21 -4.54 9.96 -26.70 -0.27 -4.81 16 25 C -0.14 -3.20 9.49 -26.70 -0.25 -3.45 16 26 H 0.06 0.60 7.81 -51.93 -0.41 0.19 16 27 H 0.06 0.64 7.92 -51.93 -0.41 0.23 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.56 7.84 -51.93 -0.41 0.15 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 34 H 0.08 0.95 7.85 -51.93 -0.41 0.54 16 35 H 0.37 2.92 7.97 45.56 0.36 3.28 16 36 H 0.09 1.27 7.69 -51.93 -0.40 0.87 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.40 4.49 7.42 -34.47 -0.26 4.23 16 39 H 0.13 2.84 8.14 -51.93 -0.42 2.42 16 40 H 0.10 1.73 8.09 -51.92 -0.42 1.31 16 41 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 42 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 43 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 44 H 0.09 2.06 8.14 -51.93 -0.42 1.63 16 45 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -32.50 372.87 -10.10 -42.60 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.93 Total: 9.61 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: -1.44 Total: -34.57 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.66 Total: -38.85 kcal Atomic # 8 Polarization: -48.47 SS G_CDS: -2.42 Total: -50.89 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 50.81 SS G_CDS: -0.56 Total: 50.25 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.50 -10.10 -42.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451605535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.294 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds