Wall clock time and date at job start Tue Mar 31 2020 12:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 110.05685 * 2 1 4 4 C 1.54272 * 110.02874 * 238.58733 * 2 1 3 5 5 C 1.54888 * 104.19278 * 264.32557 * 4 2 1 6 6 C 1.54892 * 102.75141 * 322.05840 * 5 4 2 7 7 C 1.53874 * 110.03354 * 121.42133 * 2 1 3 8 8 O 1.42899 * 110.03028 * 359.97438 * 7 2 1 9 9 C 1.53001 * 110.03093 * 238.56662 * 7 2 1 10 10 N 1.46498 * 109.47048 * 186.37617 * 9 7 2 11 11 S 1.65601 * 119.99991 * 165.00143 * 10 9 7 12 12 O 1.42101 * 104.27614 * 181.07400 * 11 10 9 13 13 O 1.42096 * 104.27381 * 308.92689 * 11 10 9 14 14 C 1.81391 * 104.45008 * 65.00057 * 11 10 9 15 15 C 1.53001 * 109.47345 * 173.81215 * 14 11 10 16 16 C 1.50704 * 115.54893 * 65.19102 * 15 14 11 17 17 H 1.07998 * 120.00077 * 264.78558 * 16 15 14 18 18 C 1.37878 * 119.99294 * 84.78683 * 16 15 14 19 19 N 1.31508 * 120.00394 * 352.23187 * 18 16 15 20 20 Si 1.86804 * 119.99508 * 172.23066 * 18 16 15 21 21 H 1.48497 * 109.47218 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46701 * 120.00173 * 20 18 16 23 23 H 1.48502 * 109.47298 * 239.99934 * 20 18 16 24 24 C 1.52998 * 117.49963 * 279.52866 * 15 14 11 25 25 C 1.52995 * 117.50181 * 210.86816 * 15 14 11 26 26 H 1.08994 * 109.47288 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46564 * 299.96363 * 1 2 3 28 28 H 1.09003 * 109.47092 * 59.95653 * 1 2 3 29 29 H 1.09002 * 110.48413 * 145.65046 * 4 2 1 30 30 H 1.08997 * 110.48410 * 23.00256 * 4 2 1 31 31 H 1.09003 * 110.76024 * 80.37311 * 5 4 2 32 32 H 1.09002 * 110.75758 * 203.74374 * 5 4 2 33 33 H 1.08995 * 110.48671 * 156.62029 * 6 5 4 34 34 H 1.09003 * 110.48575 * 279.26599 * 6 5 4 35 35 H 0.96705 * 114.00189 * 178.62176 * 8 7 2 36 36 H 1.08999 * 109.47164 * 306.38125 * 9 7 2 37 37 H 1.09003 * 109.47064 * 66.37916 * 9 7 2 38 38 H 0.97006 * 120.00015 * 345.00382 * 10 9 7 39 39 H 1.08998 * 109.47556 * 293.81173 * 14 11 10 40 40 H 1.09004 * 109.47143 * 53.81575 * 14 11 10 41 41 H 0.97009 * 119.99805 * 185.01491 * 19 18 16 42 42 H 1.09003 * 117.50227 * 359.97438 * 24 15 14 43 43 H 1.08995 * 117.50124 * 145.01497 * 24 15 14 44 44 H 1.09005 * 117.49800 * 214.97885 * 25 15 14 45 45 H 1.09007 * 117.49886 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0584 -0.7554 -1.2370 5 6 2.3280 -2.1901 -0.7193 6 6 2.8875 -1.9408 0.7034 7 6 2.0572 -0.7536 1.2336 8 8 0.9635 -1.2326 2.0188 9 6 2.9410 0.1702 2.0741 10 7 3.5575 -0.5976 3.1588 11 16 4.8379 0.0349 3.9971 12 8 5.1795 -0.9789 4.9324 13 8 5.7527 0.4385 2.9875 14 6 4.1509 1.4816 4.8489 15 6 5.2067 2.0702 5.7868 16 6 6.4271 2.6434 5.1136 17 1 7.3147 2.0388 4.9989 18 6 6.4104 3.9397 4.6441 19 7 5.2879 4.6247 4.6443 20 14 7.9825 4.7228 4.0077 21 1 9.0986 3.7490 4.1136 22 1 7.8005 5.1138 2.5867 23 1 8.2978 5.9278 4.8162 24 6 5.4017 1.3929 7.1448 25 6 4.7145 2.7581 7.0617 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5133 0.8903 28 1 -0.3633 0.5145 -0.8896 29 1 2.9811 -0.3000 -1.5967 30 1 1.3060 -0.7695 -2.0255 31 1 1.4030 -2.7652 -0.6753 32 1 3.0674 -2.6931 -1.3425 33 1 2.7401 -2.8198 1.3307 34 1 3.9440 -1.6768 0.6569 35 1 1.2309 -1.7351 2.8006 36 1 3.7202 0.5994 1.4442 37 1 2.3327 0.9705 2.4956 38 1 3.2156 -1.4766 3.3859 39 1 3.8594 2.2316 4.1138 40 1 3.2775 1.1815 5.4279 41 1 5.2596 5.5096 4.2477 42 1 4.7776 0.5282 7.3703 43 1 6.4125 1.3623 7.5514 44 1 5.2736 3.6252 7.4137 45 1 3.6384 2.7918 7.2321 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451605535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:15 Heat of formation + Delta-G solvation = -140.395438 kcal Electronic energy + Delta-G solvation = -26198.060985 eV Core-core repulsion = 22534.664119 eV Total energy + Delta-G solvation = -3663.396866 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.74422 -38.57462 -37.95502 -36.81742 -36.26164 -35.30122 -34.09482 -31.96117 -29.86762 -29.58464 -27.49804 -26.88640 -24.47389 -23.00136 -21.85472 -21.51201 -20.60026 -20.04591 -18.74404 -18.36948 -17.65241 -17.07546 -16.77356 -16.73107 -16.41159 -16.26400 -15.70564 -15.34060 -15.01843 -14.86410 -14.37449 -13.88928 -13.76879 -13.68004 -13.52204 -13.28189 -13.16022 -13.15061 -12.98800 -12.91358 -12.86275 -12.82203 -12.44652 -12.23060 -12.14408 -11.92711 -11.85665 -11.58267 -11.49058 -11.42438 -11.30147 -10.90050 -10.87300 -10.56547 -10.50269 -9.87824 -8.20430 -6.34961 -0.52853 1.36248 1.39811 1.50780 1.99869 2.38884 2.92060 3.06873 3.22032 3.37440 3.41890 3.54212 3.63043 3.72835 3.96178 4.23884 4.27968 4.31106 4.39520 4.44201 4.47697 4.52846 4.59233 4.65309 4.69166 4.79853 4.83172 4.89946 4.97080 4.99903 5.08061 5.09084 5.18543 5.20621 5.28564 5.35989 5.43920 5.46239 5.57980 5.60501 5.71123 6.08493 6.21750 6.71554 6.83592 7.37552 8.86796 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016422 B = 0.004239 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.615950 B = 6604.073323 C = 7142.793658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.092 4.092 3 H 0.078 0.922 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.155 4.155 7 C 0.138 3.862 8 O -0.552 6.552 9 C 0.087 3.913 10 N -1.111 6.111 11 S 2.629 3.371 12 O -0.993 6.993 13 O -0.992 6.992 14 C -0.553 4.553 15 C 0.009 3.991 16 C -0.533 4.533 17 H 0.048 0.952 18 C 0.043 3.957 19 N -0.892 5.892 20 Si 0.935 3.065 21 H -0.273 1.273 22 H -0.276 1.276 23 H -0.272 1.272 24 C -0.196 4.196 25 C -0.139 4.139 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.383 0.617 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.421 0.579 39 H 0.121 0.879 40 H 0.133 0.867 41 H 0.265 0.735 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.574 -10.992 -8.647 18.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.111 4.111 3 H 0.097 0.903 4 C -0.159 4.159 5 C -0.154 4.154 6 C -0.193 4.193 7 C 0.095 3.905 8 O -0.359 6.359 9 C -0.040 4.040 10 N -0.872 5.872 11 S 2.725 3.275 12 O -0.984 6.984 13 O -0.981 6.981 14 C -0.685 4.685 15 C 0.007 3.993 16 C -0.571 4.571 17 H 0.067 0.933 18 C -0.160 4.160 19 N -0.529 5.529 20 Si 0.761 3.239 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.197 1.197 24 C -0.233 4.233 25 C -0.178 4.178 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.232 0.768 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.257 0.743 39 H 0.140 0.860 40 H 0.151 0.849 41 H 0.075 0.925 42 H 0.118 0.882 43 H 0.101 0.899 44 H 0.084 0.916 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.031 -10.676 -9.172 17.883 hybrid contribution 0.723 0.645 0.513 1.096 sum -10.309 -10.031 -8.659 16.789 Atomic orbital electron populations 1.21460 0.93211 1.02073 1.01135 1.21853 0.97748 0.99103 0.92391 0.90316 1.22489 1.01387 0.95308 0.96707 1.22432 1.01152 0.96909 0.94932 1.23105 0.99633 0.98090 0.98442 1.21917 0.85486 0.92624 0.90469 1.86589 1.32869 1.74774 1.41639 1.22236 0.97400 0.95173 0.89193 1.55365 1.54299 1.29782 1.47770 1.04222 0.73842 0.75534 0.73858 1.93469 1.82732 1.56921 1.65237 1.93481 1.61831 1.84459 1.58357 1.29871 1.08883 1.17640 1.12149 1.18436 0.94295 1.00647 0.85953 1.20727 0.97975 0.98129 1.40222 0.93333 1.25509 0.98611 0.97069 0.94785 1.70027 1.26508 1.12834 1.43484 0.85850 0.80989 0.78651 0.78439 1.19748 1.20127 1.19730 1.23247 1.01561 0.96094 1.02395 1.22511 0.98467 0.94181 1.02690 0.92350 0.93249 0.92196 0.91429 0.89869 0.90725 0.90793 0.89891 0.91593 0.76799 0.90631 0.90406 0.74317 0.86026 0.84865 0.92529 0.88205 0.89942 0.91607 0.89405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.17 8.08 71.98 0.58 -1.58 16 2 C -0.09 -1.75 3.16 -10.07 -0.03 -1.78 16 3 H 0.08 1.56 7.67 -2.39 -0.02 1.55 16 4 C -0.12 -2.00 6.37 31.67 0.20 -1.80 16 5 C -0.12 -1.88 6.91 31.89 0.22 -1.66 16 6 C -0.15 -2.94 5.45 31.67 0.17 -2.76 16 7 C 0.14 2.77 1.02 -10.07 -0.01 2.76 16 8 O -0.55 -10.18 11.12 -148.98 -1.66 -11.84 16 9 C 0.09 2.17 4.93 86.38 0.43 2.59 16 10 N -1.11 -29.24 5.41 -187.49 -1.01 -30.25 16 11 S 2.63 100.97 5.19 -56.49 -0.29 100.68 16 12 O -0.99 -41.31 18.08 -127.65 -2.31 -43.62 16 13 O -0.99 -46.62 17.16 -127.65 -2.19 -48.81 16 14 C -0.55 -22.20 5.93 71.98 0.43 -21.77 16 15 C 0.01 0.42 1.32 -52.93 -0.07 0.35 16 16 C -0.53 -29.36 8.18 25.60 0.21 -29.15 16 17 H 0.05 2.79 7.83 -2.91 -0.02 2.77 16 18 C 0.04 2.35 5.38 84.66 0.46 2.81 16 19 N -0.89 -48.83 12.98 21.45 0.28 -48.55 16 20 Si 0.94 43.83 29.55 68.60 2.03 45.86 16 21 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 C -0.20 -8.31 9.96 30.62 0.30 -8.01 16 25 C -0.14 -6.20 9.49 30.62 0.29 -5.91 16 26 H 0.06 1.05 7.81 -2.39 -0.02 1.03 16 27 H 0.05 0.97 7.92 -2.39 -0.02 0.96 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.15 7.84 -2.39 -0.02 1.13 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.35 8.05 -2.39 -0.02 1.33 16 34 H 0.07 1.47 7.85 -2.39 -0.02 1.45 16 35 H 0.38 4.96 7.97 -74.05 -0.59 4.37 16 36 H 0.08 2.14 7.69 -2.39 -0.02 2.12 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.42 8.43 7.42 -96.74 -0.72 7.71 16 39 H 0.12 5.17 8.14 -2.39 -0.02 5.15 16 40 H 0.13 4.31 8.09 -2.39 -0.02 4.29 16 41 H 0.27 13.77 8.32 -92.70 -0.77 13.00 16 42 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 43 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 44 H 0.07 3.15 8.14 -2.38 -0.02 3.13 16 45 H 0.09 3.47 8.14 -2.38 -0.02 3.45 16 Total: -1.00 -69.05 372.87 -2.31 -71.35 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: -0.33 Total: 31.09 kcal Atomic # 6 Polarization: -69.09 SS G_CDS: 3.18 Total: -65.91 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -0.74 Total: -78.80 kcal Atomic # 8 Polarization: -98.11 SS G_CDS: -6.16 Total: -104.27 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 100.97 SS G_CDS: -0.29 Total: 100.68 kcal Total: -69.05 -2.31 -71.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451605535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.042 kcal (2) G-P(sol) polarization free energy of solvation -69.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds