Wall clock time and date at job start Tue Mar 31 2020 11:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47318 * 2 1 4 4 H 1.08996 * 109.46833 * 55.00184 * 3 2 1 5 5 C 1.50699 * 109.47294 * 174.99854 * 3 2 1 6 6 H 1.07996 * 119.99839 * 119.99839 * 5 3 2 7 7 C 1.37877 * 120.00220 * 300.00673 * 5 3 2 8 8 N 1.31516 * 119.99895 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00149 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47031 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47346 * 119.99727 * 9 7 5 12 12 H 1.48508 * 109.47023 * 239.99444 * 9 7 5 13 13 N 1.46500 * 109.46995 * 295.00261 * 3 2 1 14 14 C 1.34772 * 119.99908 * 85.00074 * 13 3 2 15 15 O 1.21566 * 120.00201 * 359.97438 * 14 13 3 16 16 N 1.34781 * 119.99633 * 179.97438 * 14 13 3 17 17 C 1.38825 * 119.99791 * 185.09649 * 16 14 13 18 18 C 1.39364 * 119.38803 * 174.89986 * 17 16 14 19 19 C 1.36900 * 119.10619 * 180.10866 * 18 17 16 20 20 C 1.40383 * 118.35183 * 359.94137 * 19 18 17 21 21 C 1.39606 * 119.74349 * 359.89574 * 20 19 18 22 22 N 1.32145 * 119.62454 * 0.25440 * 21 20 19 23 23 C 1.50512 * 121.39151 * 180.59237 * 21 20 19 24 24 C 1.52612 * 111.22964 * 337.09572 * 23 21 20 25 25 C 1.53436 * 109.39933 * 54.74188 * 24 23 21 26 26 C 1.47149 * 119.89802 * 179.71917 * 20 19 18 27 27 O 1.21300 * 121.17393 * 348.74019 * 26 20 19 28 28 H 1.08996 * 109.47603 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47176 * 300.00162 * 1 2 3 30 30 H 1.09001 * 109.47212 * 59.99491 * 1 2 3 31 31 H 1.09000 * 109.47517 * 240.00123 * 2 1 3 32 32 H 1.09001 * 109.47433 * 120.00004 * 2 1 3 33 33 H 0.96995 * 120.00205 * 179.97438 * 8 7 5 34 34 H 0.97008 * 119.99636 * 264.99223 * 13 3 2 35 35 H 0.96999 * 119.99834 * 5.09248 * 16 14 13 36 36 H 1.07998 * 120.44637 * 0.13807 * 18 17 16 37 37 H 1.08005 * 120.82569 * 179.97438 * 19 18 17 38 38 H 1.09004 * 109.11509 * 216.65894 * 23 21 20 39 39 H 1.08997 * 109.09843 * 97.52358 * 23 21 20 40 40 H 1.09005 * 109.48561 * 294.76072 * 24 23 21 41 41 H 1.09004 * 109.50028 * 174.72765 * 24 23 21 42 42 H 1.09004 * 109.88270 * 176.62249 * 25 24 23 43 43 H 1.08994 * 109.88281 * 55.54365 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1471 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0049 0.8812 1.3818 10 1 6.5987 1.5463 0.1943 11 1 6.3990 1.6166 2.6102 12 1 6.4970 -0.5176 1.4630 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3668 15 8 -0.3414 2.6319 -0.4321 16 7 0.0788 3.2675 -2.5184 17 6 -1.1312 3.9428 -2.6027 18 6 -1.4396 4.6514 -3.7624 19 6 -2.6334 5.3171 -3.8385 20 6 -3.5023 5.2557 -2.7375 21 6 -3.1356 4.5252 -1.6058 22 7 -1.9706 3.9020 -1.5796 23 6 -4.0441 4.4235 -0.4100 24 6 -5.0294 5.5880 -0.3639 25 6 -5.7981 5.6580 -1.6900 26 6 -4.7916 5.9636 -2.7803 27 8 -5.0399 6.7635 -3.6577 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8292 -0.0612 2.9498 34 1 2.2720 2.1232 -1.9978 35 1 0.6678 3.2297 -3.2881 36 1 -0.7462 4.6748 -4.5901 37 1 -2.9004 5.8753 -4.7237 38 1 -3.4411 4.4297 0.4980 39 1 -4.5999 3.4874 -0.4630 40 1 -4.4844 6.5194 -0.2100 41 1 -5.7318 5.4381 0.4560 42 1 -6.5460 6.4496 -1.6436 43 1 -6.2813 4.7016 -1.8892 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455972466.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:58 Heat of formation + Delta-G solvation = -27.420958 kcal Electronic energy + Delta-G solvation = -26346.177362 eV Core-core repulsion = 22584.528236 eV Total energy + Delta-G solvation = -3761.649125 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.11263 -39.75513 -38.51800 -36.25052 -35.20589 -34.07148 -32.71955 -32.33028 -30.97150 -29.57453 -28.59115 -26.96988 -24.38491 -23.71188 -22.88556 -21.81032 -20.83024 -19.82304 -19.47208 -18.34433 -17.55789 -16.75160 -16.58676 -15.96466 -15.50985 -15.09082 -15.02293 -14.71186 -14.37243 -14.22183 -14.13198 -13.80676 -13.50510 -13.29190 -12.98273 -12.81685 -12.67684 -12.15192 -12.01042 -11.60206 -11.35890 -11.29150 -11.28690 -10.98128 -10.88931 -10.46642 -10.34663 -10.20347 -9.93397 -9.80411 -9.74356 -9.59682 -9.07463 -8.81558 -8.53157 -8.26139 -7.81502 -6.15764 -4.25093 0.51256 1.22404 2.28263 2.81617 3.21220 3.29568 3.31768 3.57543 3.87260 4.05190 4.08660 4.29758 4.47049 4.68649 4.73142 4.77998 4.80160 4.94086 5.08102 5.16337 5.22389 5.36941 5.47890 5.54365 5.65181 5.75718 5.87626 5.94025 6.09321 6.23259 6.39515 6.46860 6.63259 6.72128 6.89037 7.07329 7.24902 7.35399 7.36807 7.42284 7.60970 7.75127 7.87535 8.11457 8.15971 8.69306 8.81530 9.22979 9.43489 10.89624 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025747 B = 0.002850 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.233648 B = 9821.978232 C =10295.951982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.719 5.719 14 C 0.678 3.322 15 O -0.523 6.523 16 N -0.671 5.671 17 C 0.431 3.569 18 C -0.238 4.238 19 C 0.012 3.988 20 C -0.280 4.280 21 C 0.225 3.775 22 N -0.481 5.481 23 C -0.078 4.078 24 C -0.112 4.112 25 C -0.165 4.165 26 C 0.412 3.588 27 O -0.468 6.468 28 H 0.020 0.980 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.030 0.970 32 H 0.099 0.901 33 H 0.264 0.736 34 H 0.384 0.616 35 H 0.411 0.589 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.335 7.613 -9.892 18.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.186 3.814 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.372 5.372 14 C 0.377 3.623 15 O -0.394 6.394 16 N -0.317 5.317 17 C 0.195 3.805 18 C -0.262 4.262 19 C -0.013 4.013 20 C -0.285 4.285 21 C 0.084 3.916 22 N -0.196 5.196 23 C -0.116 4.116 24 C -0.150 4.150 25 C -0.202 4.202 26 C 0.290 3.710 27 O -0.344 6.344 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.216 0.784 35 H 0.247 0.753 36 H 0.158 0.842 37 H 0.161 0.839 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.747 7.317 -8.436 17.711 hybrid contribution 1.628 0.244 -1.469 2.206 sum -12.119 7.561 -9.904 17.382 Atomic orbital electron populations 1.21809 0.98173 0.97891 1.01346 1.21962 0.92740 0.99826 1.02218 1.18731 0.94021 0.88865 0.79814 0.93172 1.21247 0.90624 1.39062 1.06336 0.92066 1.24875 0.98616 0.94799 0.95363 1.69902 1.35042 1.37536 1.09320 0.86397 0.84811 0.77774 0.78119 1.19788 1.20872 1.20868 1.45902 1.13029 1.58870 1.19376 1.16259 0.84020 0.79595 0.82378 1.91016 1.50721 1.60917 1.36772 1.43175 1.18478 1.54151 1.15927 1.18434 0.85628 0.87274 0.89162 1.21169 1.00455 1.05216 0.99357 1.21180 0.90817 0.92209 0.97123 1.20935 0.99998 1.09589 0.98026 1.21510 0.90113 0.86890 0.93041 1.67784 1.02975 1.21797 1.27065 1.20431 0.95771 0.99595 0.95801 1.21522 0.97915 0.98941 0.96574 1.22338 0.98265 1.04659 0.94982 1.22429 0.86513 0.78185 0.83834 1.90518 1.78947 1.29558 1.35421 0.96044 0.93048 0.94336 0.95129 0.88251 0.92567 0.78373 0.75337 0.84244 0.83930 0.88165 0.88713 0.91047 0.89547 0.88820 0.87931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.51 37.15 0.32 -2.67 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.29 7.00 2.24 -69.08 -0.15 6.85 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 5 C -0.53 -13.69 8.73 -34.44 -0.30 -13.99 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.17 11.29 55.43 0.63 -23.55 16 9 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.72 -14.21 5.03 -59.82 -0.30 -14.51 16 14 C 0.68 13.15 7.09 -86.92 -0.62 12.54 16 15 O -0.52 -12.04 11.70 5.31 0.06 -11.98 16 16 N -0.67 -9.82 5.37 -15.87 -0.09 -9.91 16 17 C 0.43 6.40 7.41 -155.11 -1.15 5.25 16 18 C -0.24 -2.71 9.88 -39.65 -0.39 -3.10 16 19 C 0.01 0.14 9.66 -39.26 -0.38 -0.24 16 20 C -0.28 -3.48 5.82 -104.96 -0.61 -4.09 16 21 C 0.23 3.06 6.69 -82.04 -0.55 2.52 16 22 N -0.48 -8.06 7.71 -8.30 -0.06 -8.13 16 23 C -0.08 -0.83 5.91 -28.17 -0.17 -1.00 16 24 C -0.11 -0.86 5.89 -26.70 -0.16 -1.02 16 25 C -0.16 -1.31 6.19 -27.26 -0.17 -1.48 16 26 C 0.41 4.72 6.88 -30.30 -0.21 4.51 16 27 O -0.47 -6.54 17.30 5.54 0.10 -6.45 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 30 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 33 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.38 6.42 8.56 -40.82 -0.35 6.07 16 35 H 0.41 4.28 8.70 -40.82 -0.36 3.93 16 36 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.14 1.40 7.77 -52.48 -0.41 1.00 16 38 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 352.19 15.07 5.31 5.31 Total: -1.00 -32.71 352.19 -10.02 -42.73 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -5.86 Total: 8.77 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -4.78 Total: 2.52 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.18 Total: -56.09 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.16 Total: -18.43 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.71 -10.02 -42.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455972466.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.309 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds