Wall clock time and date at job start Tue Mar 31 2020 11:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47318 * 2 1 4 4 H 1.08996 * 109.46833 * 55.00184 * 3 2 1 5 5 C 1.50699 * 109.47294 * 174.99854 * 3 2 1 6 6 H 1.07996 * 119.99839 * 119.99839 * 5 3 2 7 7 C 1.37877 * 120.00220 * 300.00673 * 5 3 2 8 8 N 1.31516 * 119.99895 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00149 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47031 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47346 * 119.99727 * 9 7 5 12 12 H 1.48508 * 109.47023 * 239.99444 * 9 7 5 13 13 N 1.46500 * 109.46995 * 295.00261 * 3 2 1 14 14 C 1.34772 * 119.99908 * 85.00074 * 13 3 2 15 15 O 1.21566 * 120.00201 * 359.97438 * 14 13 3 16 16 N 1.34781 * 119.99633 * 179.97438 * 14 13 3 17 17 C 1.38825 * 119.99791 * 185.09649 * 16 14 13 18 18 C 1.39364 * 119.38803 * 174.89986 * 17 16 14 19 19 C 1.36900 * 119.10619 * 180.10866 * 18 17 16 20 20 C 1.40383 * 118.35183 * 359.94137 * 19 18 17 21 21 C 1.39606 * 119.74349 * 359.89574 * 20 19 18 22 22 N 1.32145 * 119.62454 * 0.25440 * 21 20 19 23 23 C 1.50512 * 121.39151 * 180.59237 * 21 20 19 24 24 C 1.52612 * 111.22964 * 337.09572 * 23 21 20 25 25 C 1.53436 * 109.39933 * 54.74188 * 24 23 21 26 26 C 1.47149 * 119.89802 * 179.71917 * 20 19 18 27 27 O 1.21300 * 121.17393 * 348.74019 * 26 20 19 28 28 H 1.08996 * 109.47603 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47176 * 300.00162 * 1 2 3 30 30 H 1.09001 * 109.47212 * 59.99491 * 1 2 3 31 31 H 1.09000 * 109.47517 * 240.00123 * 2 1 3 32 32 H 1.09001 * 109.47433 * 120.00004 * 2 1 3 33 33 H 0.96995 * 120.00205 * 179.97438 * 8 7 5 34 34 H 0.97008 * 119.99636 * 264.99223 * 13 3 2 35 35 H 0.96999 * 119.99834 * 5.09248 * 16 14 13 36 36 H 1.07998 * 120.44637 * 0.13807 * 18 17 16 37 37 H 1.08005 * 120.82569 * 179.97438 * 19 18 17 38 38 H 1.09004 * 109.11509 * 216.65894 * 23 21 20 39 39 H 1.08997 * 109.09843 * 97.52358 * 23 21 20 40 40 H 1.09005 * 109.48561 * 294.76072 * 24 23 21 41 41 H 1.09004 * 109.50028 * 174.72765 * 24 23 21 42 42 H 1.09004 * 109.88270 * 176.62249 * 25 24 23 43 43 H 1.08994 * 109.88281 * 55.54365 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1471 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0049 0.8812 1.3818 10 1 6.5987 1.5463 0.1943 11 1 6.3990 1.6166 2.6102 12 1 6.4970 -0.5176 1.4630 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3668 15 8 -0.3414 2.6319 -0.4321 16 7 0.0788 3.2675 -2.5184 17 6 -1.1312 3.9428 -2.6027 18 6 -1.4396 4.6514 -3.7624 19 6 -2.6334 5.3171 -3.8385 20 6 -3.5023 5.2557 -2.7375 21 6 -3.1356 4.5252 -1.6058 22 7 -1.9706 3.9020 -1.5796 23 6 -4.0441 4.4235 -0.4100 24 6 -5.0294 5.5880 -0.3639 25 6 -5.7981 5.6580 -1.6900 26 6 -4.7916 5.9636 -2.7803 27 8 -5.0399 6.7635 -3.6577 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8292 -0.0612 2.9498 34 1 2.2720 2.1232 -1.9978 35 1 0.6678 3.2297 -3.2881 36 1 -0.7462 4.6748 -4.5901 37 1 -2.9004 5.8753 -4.7237 38 1 -3.4411 4.4297 0.4980 39 1 -4.5999 3.4874 -0.4630 40 1 -4.4844 6.5194 -0.2100 41 1 -5.7318 5.4381 0.4560 42 1 -6.5460 6.4496 -1.6436 43 1 -6.2813 4.7016 -1.8892 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455972466.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:57 Heat of formation + Delta-G solvation = -48.515271 kcal Electronic energy + Delta-G solvation = -26347.092080 eV Core-core repulsion = 22584.528236 eV Total energy + Delta-G solvation = -3762.563844 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.18144 -41.03446 -39.66575 -37.47946 -36.62631 -35.36637 -34.28250 -33.62775 -32.70087 -30.68545 -29.43015 -28.83680 -25.64128 -24.83985 -24.42481 -22.74718 -22.31747 -21.31925 -20.66373 -19.82930 -18.73741 -18.02552 -17.65966 -17.32403 -17.08376 -16.64113 -16.12060 -15.91039 -15.60785 -15.33516 -15.17392 -14.99127 -14.79319 -14.55633 -14.32352 -14.03231 -13.83114 -13.60155 -13.38168 -13.17324 -12.84643 -12.80691 -12.69929 -12.16031 -12.13040 -12.04692 -11.99410 -11.68549 -11.50340 -11.27283 -11.01966 -10.80798 -10.72570 -10.53332 -10.05160 -9.67692 -9.22908 -8.15003 -6.31739 -0.49499 0.27258 1.32314 1.44964 1.45520 1.55129 1.60458 2.27249 2.42270 2.85807 2.97453 3.13393 3.15563 3.50577 3.65594 3.82224 3.93799 4.02847 4.11114 4.19069 4.44259 4.51879 4.59140 4.59469 4.70308 4.75798 4.79000 4.88257 4.99601 5.04331 5.08470 5.22292 5.24137 5.25800 5.30041 5.46464 5.53441 5.62268 5.70454 5.74943 5.87049 6.10484 6.19124 6.47216 6.76462 6.91205 7.32772 7.38180 7.77187 8.90655 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025747 B = 0.002850 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.233648 B = 9821.978232 C =10295.951982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.120 4.120 3 C 0.299 3.701 4 H -0.002 1.002 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.261 1.261 11 H -0.286 1.286 12 H -0.279 1.279 13 N -0.715 5.715 14 C 0.680 3.320 15 O -0.565 6.565 16 N -0.656 5.656 17 C 0.401 3.599 18 C -0.216 4.216 19 C 0.006 3.994 20 C -0.282 4.282 21 C 0.209 3.791 22 N -0.527 5.527 23 C -0.079 4.079 24 C -0.102 4.102 25 C -0.157 4.157 26 C 0.412 3.588 27 O -0.495 6.495 28 H 0.041 0.959 29 H 0.025 0.975 30 H 0.039 0.961 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.265 0.735 34 H 0.401 0.599 35 H 0.431 0.569 36 H 0.178 0.822 37 H 0.163 0.837 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.064 0.936 41 H 0.115 0.885 42 H 0.111 0.889 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.648 8.295 -11.897 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.160 4.160 3 C 0.195 3.805 4 H 0.016 0.984 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.369 5.369 14 C 0.379 3.621 15 O -0.439 6.439 16 N -0.305 5.305 17 C 0.167 3.833 18 C -0.240 4.240 19 C -0.019 4.019 20 C -0.287 4.287 21 C 0.070 3.930 22 N -0.243 5.243 23 C -0.116 4.116 24 C -0.140 4.140 25 C -0.194 4.194 26 C 0.293 3.707 27 O -0.373 6.373 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.236 0.764 35 H 0.271 0.729 36 H 0.195 0.805 37 H 0.181 0.819 38 H 0.098 0.902 39 H 0.123 0.877 40 H 0.083 0.917 41 H 0.133 0.867 42 H 0.129 0.871 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.071 8.028 -10.513 19.313 hybrid contribution 1.634 0.097 -0.883 1.859 sum -12.438 8.125 -11.395 18.723 Atomic orbital electron populations 1.21611 0.97014 0.98734 1.00133 1.21802 0.93620 0.99268 1.01269 1.18249 0.93393 0.88744 0.80125 0.98361 1.21588 0.91320 1.38810 1.06681 0.90962 1.25740 1.03155 0.94456 0.95061 1.70054 1.36928 1.38364 1.09869 0.85337 0.79289 0.77773 0.78147 1.18445 1.21199 1.20504 1.45493 1.13854 1.59023 1.18566 1.16332 0.83284 0.79308 0.83126 1.90993 1.51775 1.62328 1.38771 1.42731 1.19090 1.53640 1.15073 1.18763 0.85552 0.88685 0.90292 1.21445 1.00754 1.02974 0.98811 1.21531 0.90681 0.92150 0.97571 1.21228 1.00776 1.08787 0.97883 1.21903 0.89745 0.86998 0.94404 1.67673 1.04501 1.23318 1.28818 1.20527 0.95788 1.01463 0.93860 1.21501 0.97606 0.97246 0.97597 1.22372 0.97536 1.06254 0.93238 1.22856 0.86617 0.77128 0.84098 1.90512 1.79362 1.30669 1.36734 0.93981 0.95585 0.94166 0.94047 0.90969 0.92616 0.76401 0.72903 0.80450 0.81931 0.90225 0.87739 0.91678 0.86668 0.87093 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 8.51 71.98 0.61 -4.71 16 2 C -0.12 -5.85 5.45 30.59 0.17 -5.68 16 3 C 0.30 14.97 2.24 44.25 0.10 15.07 16 4 H 0.00 -0.09 7.58 -2.39 -0.02 -0.11 16 5 C -0.55 -28.14 8.73 25.60 0.22 -27.92 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.02 0.85 5.29 84.65 0.45 1.30 16 8 N -0.91 -51.53 11.29 21.45 0.24 -51.29 16 9 Si 0.97 41.38 29.54 68.60 2.03 43.40 16 10 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 11 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 13 N -0.72 -28.43 5.03 -461.43 -2.32 -30.75 16 14 C 0.68 26.76 7.09 179.05 1.27 28.02 16 15 O -0.56 -27.09 11.70 -3.92 -0.05 -27.14 16 16 N -0.66 -18.74 5.37 -322.39 -1.73 -20.48 16 17 C 0.40 11.67 7.41 133.18 0.99 12.66 16 18 C -0.22 -4.45 9.88 22.23 0.22 -4.23 16 19 C 0.01 0.12 9.66 22.48 0.22 0.34 16 20 C -0.28 -6.68 5.82 -20.09 -0.12 -6.80 16 21 C 0.21 5.69 6.69 42.78 0.29 5.97 16 22 N -0.53 -17.99 7.71 -180.19 -1.39 -19.38 16 23 C -0.08 -1.66 5.91 29.66 0.18 -1.49 16 24 C -0.10 -1.40 5.89 30.61 0.18 -1.22 16 25 C -0.16 -2.10 6.19 30.25 0.19 -1.91 16 26 C 0.41 8.76 6.88 28.28 0.19 8.96 16 27 O -0.49 -13.02 17.30 -3.09 -0.05 -13.07 16 28 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.02 1.27 7.84 -2.38 -0.02 1.25 16 30 H 0.04 1.78 5.64 -2.39 -0.01 1.77 16 31 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.07 3.94 5.95 -2.39 -0.01 3.92 16 33 H 0.26 14.14 8.31 -92.71 -0.77 13.36 16 34 H 0.40 13.04 8.56 -92.70 -0.79 12.24 16 35 H 0.43 8.19 8.70 -92.71 -0.81 7.39 16 36 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 37 H 0.16 2.77 7.77 -2.91 -0.02 2.75 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -74.15 352.19 1.34 -72.81 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: -0.54 Total: 27.54 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: 5.15 Total: 18.36 kcal Atomic # 7 Polarization: -116.70 SS G_CDS: -5.20 Total: -121.90 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -0.10 Total: -40.21 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Total: -74.15 1.34 -72.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455972466.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.293 kcal (2) G-P(sol) polarization free energy of solvation -74.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds