Wall clock time and date at job start Tue Mar 31 2020 11:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47212 * 2 1 4 4 N 1.46504 * 109.47063 * 179.97438 * 3 2 1 5 5 C 1.36713 * 119.99830 * 264.71220 * 4 3 2 6 6 H 1.08001 * 119.99718 * 139.94957 * 5 4 3 7 7 C 1.39123 * 120.00648 * 319.95393 * 5 4 3 8 8 N 1.31323 * 119.99619 * 347.92651 * 7 5 4 9 9 Si 1.86793 * 120.00342 * 167.92418 * 7 5 4 10 10 H 1.48497 * 109.47329 * 59.99874 * 9 7 5 11 11 H 1.48504 * 109.47548 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47132 * 299.99856 * 9 7 5 13 13 C 1.34770 * 119.99848 * 84.71971 * 4 3 2 14 14 O 1.21760 * 119.99843 * 180.02562 * 13 4 3 15 15 C 1.46230 * 120.00167 * 359.97438 * 13 4 3 16 16 C 1.34966 * 119.99991 * 186.57343 * 15 13 4 17 17 C 1.47173 * 119.99902 * 8.09144 * 16 15 13 18 18 C 1.39975 * 120.51935 * 225.41891 * 17 16 15 19 19 N 1.31688 * 120.83385 * 180.02562 * 18 17 16 20 20 C 1.31779 * 122.07157 * 0.02562 * 19 18 17 21 21 C 1.39661 * 120.95628 * 359.97438 * 20 19 18 22 22 C 1.47863 * 120.47762 * 180.02562 * 21 20 19 23 23 O 1.21549 * 119.99886 * 179.73049 * 22 21 20 24 24 N 1.34776 * 119.99869 * 359.97438 * 22 21 20 25 25 C 1.46498 * 120.00009 * 180.02562 * 24 22 21 26 26 C 1.39698 * 119.04888 * 0.27284 * 21 20 19 27 27 H 1.09004 * 109.47245 * 300.00574 * 1 2 3 28 28 H 1.09003 * 109.46909 * 60.00261 * 1 2 3 29 29 H 1.08995 * 109.47238 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47226 * 239.99708 * 2 1 3 31 31 H 1.09003 * 109.46909 * 119.99739 * 2 1 3 32 32 H 1.09004 * 109.47484 * 59.99572 * 3 2 1 33 33 H 1.08995 * 109.47176 * 299.99520 * 3 2 1 34 34 H 0.97000 * 120.00012 * 180.02562 * 8 7 5 35 35 H 1.08002 * 120.00090 * 6.57322 * 15 13 4 36 36 H 1.07998 * 120.00427 * 188.08685 * 16 15 13 37 37 H 1.07991 * 119.58142 * 0.02618 * 18 17 16 38 38 H 1.08003 * 119.51607 * 179.97438 * 20 19 18 39 39 H 0.97000 * 120.00031 * 0.02562 * 24 22 21 40 40 H 1.08996 * 109.47030 * 60.00162 * 25 24 22 41 41 H 1.08999 * 109.46892 * 180.02562 * 25 24 22 42 42 H 1.08998 * 109.47105 * 300.00050 * 25 24 22 43 43 H 1.07998 * 120.93733 * 179.72203 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1881 1.5517 1.1798 6 1 5.0780 0.9625 1.3450 7 6 3.7368 2.4217 2.1672 8 7 2.8065 3.3056 1.8883 9 14 4.4541 2.3327 3.8896 10 1 5.9164 2.5846 3.8305 11 1 3.8098 3.3591 4.7480 12 1 4.2069 0.9839 4.4597 13 6 4.1793 1.3348 -1.1613 14 8 5.3969 1.3343 -1.1607 15 6 3.4487 1.2176 -2.4225 16 6 4.1174 0.9769 -3.5699 17 6 5.5533 0.6562 -3.5314 18 6 6.4426 1.2689 -4.4219 19 7 7.7285 0.9861 -4.3932 20 6 8.2362 0.1231 -3.5364 21 6 7.4221 -0.5350 -2.6119 22 6 8.0031 -1.5009 -1.6550 23 8 7.2873 -2.0651 -0.8508 24 7 9.3272 -1.7521 -1.6712 25 6 9.9027 -2.7096 -0.7235 26 6 6.0502 -0.2714 -2.6076 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 2.4920 3.9125 2.5766 35 1 2.3740 1.3235 -2.4359 36 1 3.5989 1.0196 -4.5163 37 1 6.0696 1.9825 -5.1414 38 1 9.2972 -0.0781 -3.5495 39 1 9.8990 -1.2990 -2.3104 40 1 9.4472 -3.6883 -0.8740 41 1 10.9782 -2.7801 -0.8863 42 1 9.7111 -2.3724 0.2952 43 1 5.3920 -0.7663 -1.9090 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491741524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:05 Heat of formation + Delta-G solvation = -3.312649 kcal Electronic energy + Delta-G solvation = -26828.190722 eV Core-core repulsion = 23067.587011 eV Total energy + Delta-G solvation = -3760.603711 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.27094 -38.96673 -38.34606 -35.59785 -34.54657 -33.64968 -32.73817 -31.88847 -31.27818 -29.71671 -26.98728 -26.11496 -25.00957 -23.71590 -23.39704 -21.58539 -20.91702 -20.32910 -18.45802 -17.54583 -16.90743 -16.63205 -16.46333 -16.06877 -15.15148 -15.05107 -14.92571 -14.50108 -13.88176 -13.85574 -13.75993 -13.64823 -13.21996 -12.94205 -12.75560 -12.64388 -12.50457 -12.35353 -12.08661 -11.72207 -11.62479 -11.39209 -11.32828 -10.99490 -10.71112 -10.41287 -10.37833 -10.14503 -9.99558 -9.82188 -9.22951 -9.10781 -9.04256 -8.87744 -8.52579 -7.74398 -7.46035 -6.39803 -4.06626 0.92245 1.42280 2.29216 3.16597 3.19187 3.20905 3.25659 3.31312 4.08367 4.26617 4.35628 4.55281 4.81948 4.97343 5.01140 5.08301 5.15669 5.24667 5.37457 5.49777 5.50288 5.57581 5.68991 5.70994 5.76553 5.84197 5.96311 6.00699 6.21501 6.35656 6.39463 6.42042 6.45699 6.49523 6.58582 6.68472 6.84060 6.92371 7.00591 7.26458 7.51206 7.54898 8.19763 8.21979 8.39296 8.45433 9.11759 9.30257 9.95054 10.61082 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010937 B = 0.004794 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.417317 B = 5839.457707 C = 7036.618681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.096 3.904 4 N -0.416 5.416 5 C -0.297 4.297 6 H 0.092 0.908 7 C 0.037 3.963 8 N -0.869 5.869 9 Si 0.923 3.077 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.464 3.536 14 O -0.573 6.573 15 C -0.158 4.158 16 C -0.090 4.090 17 C -0.098 4.098 18 C 0.120 3.880 19 N -0.502 5.502 20 C 0.128 3.872 21 C -0.208 4.208 22 C 0.568 3.432 23 O -0.529 6.529 24 N -0.738 5.738 25 C 0.090 3.910 26 C 0.083 3.917 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.117 0.883 33 H 0.050 0.950 34 H 0.271 0.729 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.154 0.846 38 H 0.146 0.854 39 H 0.399 0.601 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.526 -7.115 -9.205 12.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C -0.028 4.028 4 N -0.131 5.131 5 C -0.426 4.426 6 H 0.110 0.890 7 C -0.167 4.167 8 N -0.506 5.506 9 Si 0.750 3.250 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.255 3.745 14 O -0.459 6.459 15 C -0.179 4.179 16 C -0.112 4.112 17 C -0.100 4.100 18 C -0.034 4.034 19 N -0.211 5.211 20 C -0.032 4.032 21 C -0.214 4.214 22 C 0.356 3.644 23 O -0.406 6.406 24 N -0.391 5.391 25 C -0.054 4.054 26 C 0.057 3.943 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.135 0.865 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.171 0.829 38 H 0.164 0.836 39 H 0.233 0.767 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.004 -6.938 -8.995 12.045 hybrid contribution -0.183 0.085 1.306 1.322 sum 3.821 -6.853 -7.689 10.986 Atomic orbital electron populations 1.21671 0.96267 1.00718 1.01544 1.21995 0.94974 0.99062 1.01836 1.21814 0.81976 0.94590 1.04386 1.43483 1.04834 1.59763 1.04999 1.19464 1.10618 1.21813 0.90700 0.89039 1.25506 0.96705 0.93830 1.00690 1.69731 1.28828 1.17685 1.34398 0.86039 0.79554 0.78136 0.81312 1.19624 1.20786 1.19653 1.18379 0.87781 0.84394 0.83929 1.90646 1.13388 1.55984 1.85916 1.23495 0.99962 1.00246 0.94191 1.21885 0.91766 0.99925 0.97617 1.19767 0.95057 0.98059 0.97161 1.22904 0.88208 0.96225 0.96087 1.67470 1.14578 1.15427 1.23593 1.22639 0.98892 0.91353 0.90311 1.20579 0.95756 1.03700 1.01374 1.18166 0.81784 0.81283 0.83209 1.90787 1.60099 1.50923 1.38750 1.45664 1.08320 1.46188 1.38902 1.21502 0.97693 0.92679 0.93507 1.21649 0.93573 0.89555 0.89563 0.92721 0.93176 0.93411 0.93102 0.91730 0.86499 0.93211 0.91878 0.85644 0.85273 0.82897 0.83634 0.76652 0.92310 0.90805 0.92126 0.84468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.14 -2.52 6.18 -26.73 -0.17 -2.69 16 3 C 0.10 2.05 4.57 -4.04 -0.02 2.03 16 4 N -0.42 -10.42 2.52 -116.46 -0.29 -10.71 16 5 C -0.30 -8.21 8.89 -15.05 -0.13 -8.34 16 6 H 0.09 2.69 7.76 -52.49 -0.41 2.29 16 7 C 0.04 0.98 5.12 -17.44 -0.09 0.89 16 8 N -0.87 -22.96 11.14 55.50 0.62 -22.34 16 9 Si 0.92 20.85 29.57 -169.99 -5.03 15.82 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 C 0.46 11.16 6.69 -13.05 -0.09 11.07 16 14 O -0.57 -15.33 11.82 5.14 0.06 -15.27 16 15 C -0.16 -2.93 8.71 -37.54 -0.33 -3.25 16 16 C -0.09 -1.44 9.83 -37.12 -0.37 -1.81 16 17 C -0.10 -1.74 4.55 -104.95 -0.48 -2.22 16 18 C 0.12 1.93 10.95 -16.96 -0.19 1.75 16 19 N -0.50 -8.18 10.33 -12.50 -0.13 -8.31 16 20 C 0.13 1.96 10.71 -17.04 -0.18 1.77 16 21 C -0.21 -3.72 5.88 -104.88 -0.62 -4.34 16 22 C 0.57 10.08 7.78 -12.32 -0.10 9.99 16 23 O -0.53 -11.57 16.41 5.32 0.09 -11.48 16 24 N -0.74 -9.36 5.67 -68.04 -0.39 -9.74 16 25 C 0.09 0.96 10.70 59.85 0.64 1.60 16 26 C 0.08 1.64 6.19 -38.37 -0.24 1.40 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.88 7.68 -51.93 -0.40 0.48 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.12 2.76 5.41 -51.93 -0.28 2.48 16 33 H 0.05 0.97 6.33 -51.93 -0.33 0.64 16 34 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.13 2.01 6.26 -52.49 -0.33 1.69 16 36 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 37 H 0.15 1.97 8.06 -52.49 -0.42 1.55 16 38 H 0.15 1.61 6.40 -52.48 -0.34 1.27 16 39 H 0.40 3.73 6.88 -40.82 -0.28 3.45 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.14 3.03 6.79 -52.49 -0.36 2.68 16 LS Contribution 360.37 15.07 5.43 5.43 Total: -1.00 -34.17 360.37 -7.27 -41.44 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.66 Total: 9.01 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -1.97 Total: 6.15 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.19 Total: -51.10 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: 0.15 Total: -26.75 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.17 -7.27 -41.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491741524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.122 kcal (2) G-P(sol) polarization free energy of solvation -34.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds