Wall clock time and date at job start Tue Mar 31 2020 11:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47212 * 2 1 4 4 N 1.46504 * 109.47063 * 179.97438 * 3 2 1 5 5 C 1.36713 * 119.99830 * 264.71220 * 4 3 2 6 6 H 1.08001 * 119.99718 * 139.94957 * 5 4 3 7 7 C 1.39123 * 120.00648 * 319.95393 * 5 4 3 8 8 N 1.31323 * 119.99619 * 347.92651 * 7 5 4 9 9 Si 1.86793 * 120.00342 * 167.92418 * 7 5 4 10 10 H 1.48497 * 109.47329 * 59.99874 * 9 7 5 11 11 H 1.48504 * 109.47548 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47132 * 299.99856 * 9 7 5 13 13 C 1.34770 * 119.99848 * 84.71971 * 4 3 2 14 14 O 1.21760 * 119.99843 * 180.02562 * 13 4 3 15 15 C 1.46230 * 120.00167 * 359.97438 * 13 4 3 16 16 C 1.34966 * 119.99991 * 186.57343 * 15 13 4 17 17 C 1.47173 * 119.99902 * 8.09144 * 16 15 13 18 18 C 1.39975 * 120.51935 * 225.41891 * 17 16 15 19 19 N 1.31688 * 120.83385 * 180.02562 * 18 17 16 20 20 C 1.31779 * 122.07157 * 0.02562 * 19 18 17 21 21 C 1.39661 * 120.95628 * 359.97438 * 20 19 18 22 22 C 1.47863 * 120.47762 * 180.02562 * 21 20 19 23 23 O 1.21549 * 119.99886 * 179.73049 * 22 21 20 24 24 N 1.34776 * 119.99869 * 359.97438 * 22 21 20 25 25 C 1.46498 * 120.00009 * 180.02562 * 24 22 21 26 26 C 1.39698 * 119.04888 * 0.27284 * 21 20 19 27 27 H 1.09004 * 109.47245 * 300.00574 * 1 2 3 28 28 H 1.09003 * 109.46909 * 60.00261 * 1 2 3 29 29 H 1.08995 * 109.47238 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47226 * 239.99708 * 2 1 3 31 31 H 1.09003 * 109.46909 * 119.99739 * 2 1 3 32 32 H 1.09004 * 109.47484 * 59.99572 * 3 2 1 33 33 H 1.08995 * 109.47176 * 299.99520 * 3 2 1 34 34 H 0.97000 * 120.00012 * 180.02562 * 8 7 5 35 35 H 1.08002 * 120.00090 * 6.57322 * 15 13 4 36 36 H 1.07998 * 120.00427 * 188.08685 * 16 15 13 37 37 H 1.07991 * 119.58142 * 0.02618 * 18 17 16 38 38 H 1.08003 * 119.51607 * 179.97438 * 20 19 18 39 39 H 0.97000 * 120.00031 * 0.02562 * 24 22 21 40 40 H 1.08996 * 109.47030 * 60.00162 * 25 24 22 41 41 H 1.08999 * 109.46892 * 180.02562 * 25 24 22 42 42 H 1.08998 * 109.47105 * 300.00050 * 25 24 22 43 43 H 1.07998 * 120.93733 * 179.72203 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1881 1.5517 1.1798 6 1 5.0780 0.9625 1.3450 7 6 3.7368 2.4217 2.1672 8 7 2.8065 3.3056 1.8883 9 14 4.4541 2.3327 3.8896 10 1 5.9164 2.5846 3.8305 11 1 3.8098 3.3591 4.7480 12 1 4.2069 0.9839 4.4597 13 6 4.1793 1.3348 -1.1613 14 8 5.3969 1.3343 -1.1607 15 6 3.4487 1.2176 -2.4225 16 6 4.1174 0.9769 -3.5699 17 6 5.5533 0.6562 -3.5314 18 6 6.4426 1.2689 -4.4219 19 7 7.7285 0.9861 -4.3932 20 6 8.2362 0.1231 -3.5364 21 6 7.4221 -0.5350 -2.6119 22 6 8.0031 -1.5009 -1.6550 23 8 7.2873 -2.0651 -0.8508 24 7 9.3272 -1.7521 -1.6712 25 6 9.9027 -2.7096 -0.7235 26 6 6.0502 -0.2714 -2.6076 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 2.4920 3.9125 2.5766 35 1 2.3740 1.3235 -2.4359 36 1 3.5989 1.0196 -4.5163 37 1 6.0696 1.9825 -5.1414 38 1 9.2972 -0.0781 -3.5495 39 1 9.8990 -1.2990 -2.3104 40 1 9.4472 -3.6883 -0.8740 41 1 10.9782 -2.7801 -0.8863 42 1 9.7111 -2.3724 0.2952 43 1 5.3920 -0.7663 -1.9090 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491741524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:05 Heat of formation + Delta-G solvation = -27.581967 kcal Electronic energy + Delta-G solvation = -26829.243118 eV Core-core repulsion = 23067.587011 eV Total energy + Delta-G solvation = -3761.656107 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64463 -40.58116 -39.82661 -37.32322 -35.83776 -35.12753 -34.45387 -33.26347 -32.98521 -31.12947 -28.12373 -27.82464 -26.59349 -25.19093 -24.70528 -23.11000 -22.39486 -21.71330 -19.95172 -19.13471 -18.64352 -18.12029 -17.84726 -17.45448 -16.86490 -16.36281 -16.35005 -16.12959 -15.52409 -15.38673 -15.30911 -14.99441 -14.58488 -14.40739 -14.09940 -13.97761 -13.84594 -13.68205 -13.37892 -13.24506 -13.12105 -13.04351 -12.92841 -12.63735 -12.32699 -12.14788 -11.99469 -11.65191 -11.47047 -11.29198 -10.94468 -10.65261 -10.42429 -10.24930 -10.07374 -9.38064 -9.23706 -8.36382 -6.13688 -0.39787 -0.01416 0.91984 1.32988 1.35374 1.43170 1.80714 2.15306 2.22860 2.55360 2.93221 3.08276 3.14465 3.37712 3.69373 3.88509 3.92888 3.98784 4.07283 4.16117 4.31584 4.35379 4.40045 4.55265 4.57248 4.62165 4.69097 4.79614 4.89667 4.97477 5.01859 5.07446 5.13724 5.25958 5.29177 5.32338 5.36705 5.41496 5.56669 5.62470 5.68061 6.20388 6.42887 6.54377 6.89562 7.12821 7.15647 7.44758 8.08113 8.62406 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010937 B = 0.004794 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.417317 B = 5839.457707 C = 7036.618681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.131 4.131 3 C 0.101 3.899 4 N -0.440 5.440 5 C -0.331 4.331 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.885 5.885 9 Si 0.977 3.023 10 H -0.282 1.282 11 H -0.263 1.263 12 H -0.268 1.268 13 C 0.457 3.543 14 O -0.612 6.612 15 C -0.191 4.191 16 C -0.045 4.045 17 C -0.124 4.124 18 C 0.131 3.869 19 N -0.507 5.507 20 C 0.142 3.858 21 C -0.227 4.227 22 C 0.560 3.440 23 O -0.586 6.586 24 N -0.715 5.715 25 C 0.085 3.915 26 C 0.060 3.940 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.275 0.725 35 H 0.154 0.846 36 H 0.188 0.812 37 H 0.193 0.807 38 H 0.191 0.809 39 H 0.418 0.582 40 H 0.055 0.945 41 H 0.123 0.877 42 H 0.041 0.959 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.955 -6.740 -11.943 14.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.170 4.170 3 C -0.022 4.022 4 N -0.155 5.155 5 C -0.460 4.460 6 H 0.070 0.930 7 C -0.197 4.197 8 N -0.523 5.523 9 Si 0.800 3.200 10 H -0.208 1.208 11 H -0.187 1.187 12 H -0.193 1.193 13 C 0.250 3.750 14 O -0.501 6.501 15 C -0.212 4.212 16 C -0.066 4.066 17 C -0.126 4.126 18 C -0.024 4.024 19 N -0.215 5.215 20 C -0.017 4.017 21 C -0.233 4.233 22 C 0.347 3.653 23 O -0.467 6.467 24 N -0.368 5.368 25 C -0.059 4.059 26 C 0.034 3.966 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.171 0.829 36 H 0.205 0.795 37 H 0.209 0.791 38 H 0.207 0.793 39 H 0.256 0.744 40 H 0.073 0.927 41 H 0.142 0.858 42 H 0.059 0.941 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.461 -6.560 -11.770 14.194 hybrid contribution -0.105 -0.110 1.950 1.956 sum 4.356 -6.671 -9.819 12.645 Atomic orbital electron populations 1.21618 0.92974 1.02329 1.02385 1.21889 0.97669 0.96725 1.00713 1.21831 0.80055 0.96416 1.03918 1.43678 1.06178 1.61039 1.04628 1.19196 1.10723 1.22905 0.93184 0.92999 1.26090 0.97026 0.93206 1.03337 1.69797 1.29304 1.17860 1.35313 0.85262 0.78211 0.78652 0.77832 1.20751 1.18703 1.19291 1.19302 0.87801 0.82371 0.85547 1.90612 1.15315 1.57122 1.87036 1.23363 1.01130 1.04577 0.92092 1.22522 0.90786 0.94369 0.98933 1.20079 0.96647 0.98382 0.97536 1.23503 0.87872 0.95544 0.95483 1.67626 1.14725 1.15486 1.23683 1.23245 1.00498 0.89569 0.88427 1.20783 0.95576 1.04532 1.02409 1.18391 0.83190 0.80987 0.82685 1.90755 1.61797 1.53146 1.41022 1.45547 1.06701 1.45616 1.38910 1.21737 1.00447 0.91674 0.92002 1.21517 0.94287 0.90947 0.89878 0.93166 0.91030 0.91408 0.92543 0.94567 0.88980 0.91303 0.91459 0.82895 0.79501 0.79051 0.79254 0.74380 0.92665 0.85817 0.94056 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.91 71.98 0.71 -3.01 16 2 C -0.13 -4.84 6.18 30.59 0.19 -4.65 16 3 C 0.10 4.42 4.57 86.38 0.39 4.81 16 4 N -0.44 -23.24 2.52 -640.58 -1.61 -24.85 16 5 C -0.33 -19.62 8.89 84.15 0.75 -18.87 16 6 H 0.05 3.38 7.76 -2.91 -0.02 3.36 16 7 C 0.01 0.34 5.12 84.98 0.43 0.78 16 8 N -0.89 -48.18 11.14 21.69 0.24 -47.94 16 9 Si 0.98 44.53 29.57 68.60 2.03 46.56 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 C 0.46 22.96 6.69 86.32 0.58 23.54 16 14 O -0.61 -34.66 11.82 -4.54 -0.05 -34.71 16 15 C -0.19 -6.94 8.71 23.59 0.21 -6.73 16 16 C -0.05 -1.33 9.83 23.87 0.23 -1.10 16 17 C -0.12 -4.25 4.55 -20.08 -0.09 -4.35 16 18 C 0.13 3.79 10.95 85.14 0.93 4.73 16 19 N -0.51 -15.01 10.33 -193.45 -2.00 -17.01 16 20 C 0.14 4.04 10.71 85.04 0.91 4.95 16 21 C -0.23 -8.23 5.88 -20.03 -0.12 -8.35 16 22 C 0.56 20.56 7.78 86.79 0.68 21.23 16 23 O -0.59 -27.61 16.41 -3.87 -0.06 -27.67 16 24 N -0.72 -17.44 5.67 -487.47 -2.76 -20.20 16 25 C 0.08 1.71 10.70 127.77 1.37 3.08 16 26 C 0.06 2.48 6.19 23.06 0.14 2.62 16 27 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.99 7.68 -2.39 -0.02 1.97 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 4.51 5.41 -2.38 -0.01 4.50 16 33 H 0.07 2.67 6.33 -2.39 -0.02 2.65 16 34 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 35 H 0.15 4.60 6.26 -2.91 -0.02 4.58 16 36 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 37 H 0.19 3.98 8.06 -2.92 -0.02 3.95 16 38 H 0.19 3.48 6.40 -2.91 -0.02 3.46 16 39 H 0.42 6.68 6.88 -92.71 -0.64 6.04 16 40 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.04 1.01 8.14 -2.39 -0.02 1.00 16 43 H 0.10 4.69 6.79 -2.91 -0.02 4.67 16 Total: -1.00 -83.51 360.37 3.50 -80.00 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.40 Total: 27.13 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 7.32 Total: 18.69 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -6.13 Total: -110.00 kcal Atomic # 8 Polarization: -62.27 SS G_CDS: -0.12 Total: -62.38 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -83.51 3.50 -80.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491741524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.422 kcal (2) G-P(sol) polarization free energy of solvation -83.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds