Wall clock time and date at job start Tue Mar 31 2020 11:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46783 * 2 1 4 4 H 1.08996 * 109.47167 * 305.00081 * 3 2 1 5 5 C 1.50698 * 109.46959 * 185.00064 * 3 2 1 6 6 H 1.07998 * 120.00050 * 240.00127 * 5 3 2 7 7 C 1.37878 * 120.00062 * 60.00439 * 5 3 2 8 8 N 1.31518 * 119.99725 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00117 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47464 * 89.99546 * 9 7 5 11 11 H 1.48498 * 109.46839 * 209.99692 * 9 7 5 12 12 H 1.48498 * 109.47036 * 329.99376 * 9 7 5 13 13 N 1.46500 * 109.47400 * 65.00097 * 3 2 1 14 14 C 1.34776 * 120.00115 * 275.00480 * 13 3 2 15 15 O 1.21278 * 120.00248 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00066 * 179.97438 * 14 13 3 17 17 N 1.46501 * 109.47427 * 179.97438 * 16 14 13 18 18 C 1.34774 * 120.00287 * 179.97438 * 17 16 14 19 19 O 1.21700 * 120.00037 * 0.02562 * 18 17 16 20 20 C 1.46425 * 120.00095 * 180.27714 * 18 17 16 21 21 C 1.34802 * 120.00079 * 172.95141 * 20 18 17 22 22 C 1.47210 * 120.00101 * 349.10703 * 21 20 18 23 23 C 1.40270 * 120.58753 * 136.52985 * 22 21 20 24 24 C 1.38288 * 118.26661 * 179.97438 * 23 22 21 25 25 C 1.38391 * 119.33641 * 0.02562 * 24 23 22 26 26 N 1.31941 * 121.13831 * 0.02562 * 25 24 23 27 27 C 1.31668 * 121.90604 * 359.65310 * 26 25 24 28 28 H 1.08998 * 109.47277 * 59.99732 * 1 2 3 29 29 H 1.09004 * 109.46922 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46850 * 299.99847 * 1 2 3 31 31 H 1.08996 * 109.46720 * 240.00458 * 2 1 3 32 32 H 1.08995 * 109.47053 * 119.99791 * 2 1 3 33 33 H 0.96997 * 119.99573 * 180.02562 * 8 7 5 34 34 H 0.97000 * 119.99860 * 94.99739 * 13 3 2 35 35 H 1.09006 * 109.47415 * 59.99583 * 16 14 13 36 36 H 1.09006 * 109.47022 * 299.99579 * 16 14 13 37 37 H 0.96998 * 119.99562 * 0.02562 * 17 16 14 38 38 H 1.07997 * 119.99829 * 352.94936 * 20 18 17 39 39 H 1.08000 * 120.00020 * 169.11092 * 21 20 18 40 40 H 1.07996 * 120.86381 * 359.97438 * 23 22 21 41 41 H 1.07999 * 120.32613 * 180.02562 * 24 23 22 42 42 H 1.07996 * 119.43193 * 179.97438 * 25 24 23 43 43 H 1.07992 * 119.73750 * 180.31804 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8786 -1.2280 8 7 3.4062 0.3368 -2.1729 9 14 6.0050 0.8802 -1.3812 10 1 6.5539 -0.3518 -0.7599 11 1 6.3834 0.9217 -2.8166 12 1 6.5575 2.0721 -0.6890 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3394 2.6325 0.4343 16 6 0.0362 3.3376 2.6549 17 7 -1.3223 3.8707 2.5269 18 6 -1.8924 4.5184 3.5622 19 8 -1.2784 4.6608 4.6033 20 6 -3.2525 5.0460 3.4363 21 6 -3.8757 5.5667 4.5123 22 6 -3.2967 5.3921 5.8544 23 6 -3.2541 6.4639 6.7583 24 6 -2.7001 6.2462 8.0066 25 6 -2.2096 4.9910 8.3211 26 7 -2.2614 4.0005 7.4511 27 6 -2.7841 4.1538 6.2524 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0616 -2.9496 34 1 2.2720 2.1232 1.9977 35 1 0.7276 4.1530 2.8680 36 1 0.0673 2.6128 3.4685 37 1 -1.8117 3.7569 1.6972 38 1 -3.7563 5.0180 2.4815 39 1 -4.7998 6.1120 4.3896 40 1 -3.6439 7.4337 6.4866 41 1 -2.6507 7.0479 8.7286 42 1 -1.7762 4.8194 9.2953 43 1 -2.8131 3.3176 5.5696 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492577771.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:03 Heat of formation + Delta-G solvation = -15.518714 kcal Electronic energy + Delta-G solvation = -25574.998499 eV Core-core repulsion = 21813.865494 eV Total energy + Delta-G solvation = -3761.133005 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.57337 -39.64687 -38.80200 -35.45329 -34.63179 -34.05955 -32.49838 -32.25394 -31.12270 -30.23864 -28.14052 -26.61062 -24.40717 -23.54730 -23.05510 -21.99455 -20.47528 -19.88250 -19.41325 -17.94189 -17.18969 -16.92067 -16.35776 -16.09631 -15.69305 -15.40242 -15.31815 -14.79772 -14.57109 -14.23922 -14.10271 -13.65303 -13.52966 -13.22166 -13.09452 -12.76612 -12.71216 -12.67952 -11.90201 -11.88384 -11.50245 -11.30296 -11.04431 -10.86646 -10.54985 -10.37456 -10.27752 -10.15880 -9.81731 -9.70517 -9.41666 -9.22725 -9.10552 -9.05295 -8.55994 -8.45146 -7.95281 -6.17389 -4.27020 0.40181 1.24236 1.57409 3.07423 3.13315 3.21586 3.23161 3.29233 3.31524 3.79710 4.03771 4.28822 4.33476 4.54870 4.61223 4.73060 4.78666 4.96587 5.14146 5.14478 5.30507 5.37685 5.50118 5.51901 5.60460 5.76297 5.86025 6.01894 6.12379 6.31250 6.33236 6.38715 6.58809 6.60213 6.97300 7.11225 7.26733 7.33095 7.50476 7.55056 7.65307 7.82692 7.94670 8.11479 8.15737 8.53124 8.68996 8.96567 9.40202 10.87908 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023939 B = 0.002398 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.356393 B =11671.925619 C =12159.959972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.701 5.701 14 C 0.496 3.504 15 O -0.549 6.549 16 C 0.096 3.904 17 N -0.703 5.703 18 C 0.537 3.463 19 O -0.538 6.538 20 C -0.200 4.200 21 C -0.026 4.026 22 C -0.122 4.122 23 C -0.061 4.061 24 C -0.188 4.188 25 C 0.103 3.897 26 N -0.492 5.492 27 C 0.182 3.818 28 H 0.049 0.951 29 H 0.023 0.977 30 H 0.037 0.963 31 H 0.100 0.900 32 H 0.032 0.968 33 H 0.265 0.735 34 H 0.392 0.608 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.413 0.587 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.151 0.849 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.438 10.334 15.068 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.348 5.348 14 C 0.280 3.720 15 O -0.429 6.429 16 C -0.031 4.031 17 N -0.357 5.357 18 C 0.325 3.675 19 O -0.418 6.418 20 C -0.221 4.221 21 C -0.046 4.046 22 C -0.124 4.124 23 C -0.086 4.086 24 C -0.208 4.208 25 C -0.052 4.052 26 N -0.201 5.201 27 C 0.024 3.976 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.118 0.882 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.224 0.776 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.251 0.749 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.168 0.832 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -14.132 9.464 15.136 22.768 hybrid contribution 0.889 0.803 -0.561 1.323 sum -13.242 10.267 14.575 22.208 Atomic orbital electron populations 1.21836 0.98344 0.98140 1.01074 1.21947 0.92618 0.99724 1.02450 1.18837 0.94354 0.89209 0.80688 0.93178 1.21223 0.90613 1.39210 1.06375 0.92002 1.24884 0.98693 0.94734 0.95335 1.69889 1.35186 1.37478 1.09374 0.86442 0.84749 0.78505 0.77393 1.20500 1.21062 1.19838 1.46457 1.14229 1.55256 1.18856 1.20226 0.83365 0.79718 0.88708 1.90657 1.51429 1.60434 1.40334 1.21164 0.84772 0.99711 0.97494 1.45701 1.16234 1.56197 1.17542 1.18456 0.87400 0.78245 0.83357 1.90870 1.64902 1.58273 1.27721 1.23041 0.94869 1.03724 1.00435 1.22237 0.97982 0.93878 0.90512 1.19899 1.02247 0.95692 0.94589 1.21582 0.96238 0.98083 0.92717 1.21925 1.02270 0.98881 0.97727 1.22777 0.95097 0.88814 0.98485 1.67620 1.15296 1.33951 1.03283 1.22725 0.88140 0.95375 0.91407 0.93139 0.95773 0.94418 0.88179 0.94919 0.92511 0.77575 0.88897 0.88830 0.74893 0.84312 0.84273 0.85102 0.85090 0.83203 0.83792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.52 37.16 0.32 -2.60 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.52 2.24 -69.08 -0.15 6.37 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.54 -13.76 8.73 -34.44 -0.30 -14.06 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.18 11.29 55.43 0.63 -23.55 16 9 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.70 -13.63 5.02 -54.94 -0.28 -13.91 16 14 C 0.50 8.93 6.47 -10.99 -0.07 8.86 16 15 O -0.55 -11.34 12.81 5.56 0.07 -11.27 16 16 C 0.10 1.37 6.15 -5.20 -0.03 1.34 16 17 N -0.70 -9.17 5.52 -62.88 -0.35 -9.51 16 18 C 0.54 6.78 6.80 -12.97 -0.09 6.69 16 19 O -0.54 -8.29 12.14 5.19 0.06 -8.23 16 20 C -0.20 -1.81 9.92 -37.51 -0.37 -2.18 16 21 C -0.03 -0.21 9.84 -37.16 -0.37 -0.58 16 22 C -0.12 -1.30 4.55 -104.90 -0.48 -1.78 16 23 C -0.06 -0.56 9.95 -38.80 -0.39 -0.94 16 24 C -0.19 -1.69 10.09 -39.51 -0.40 -2.09 16 25 C 0.10 1.11 11.17 -17.45 -0.19 0.91 16 26 N -0.49 -6.64 10.34 -12.83 -0.13 -6.77 16 27 C 0.18 2.33 7.78 -17.04 -0.13 2.19 16 28 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.77 5.65 -51.93 -0.29 0.48 16 31 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.39 6.67 8.54 -40.82 -0.35 6.32 16 35 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.41 5.22 7.42 -40.82 -0.30 4.91 16 38 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.14 1.84 7.02 -52.49 -0.37 1.47 16 LS Contribution 359.83 15.07 5.42 5.42 Total: -1.00 -31.94 359.83 -8.26 -40.20 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -5.77 Total: 11.70 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -2.90 Total: 0.64 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.13 Total: -53.74 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: 0.13 Total: -19.50 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.94 -8.26 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492577771.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.681 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds