Wall clock time and date at job start Tue Mar 31 2020 11:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46783 * 2 1 4 4 H 1.08996 * 109.47167 * 305.00081 * 3 2 1 5 5 C 1.50698 * 109.46959 * 185.00064 * 3 2 1 6 6 H 1.07998 * 120.00050 * 240.00127 * 5 3 2 7 7 C 1.37878 * 120.00062 * 60.00439 * 5 3 2 8 8 N 1.31518 * 119.99725 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00117 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47464 * 89.99546 * 9 7 5 11 11 H 1.48498 * 109.46839 * 209.99692 * 9 7 5 12 12 H 1.48498 * 109.47036 * 329.99376 * 9 7 5 13 13 N 1.46500 * 109.47400 * 65.00097 * 3 2 1 14 14 C 1.34776 * 120.00115 * 275.00480 * 13 3 2 15 15 O 1.21278 * 120.00248 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00066 * 179.97438 * 14 13 3 17 17 N 1.46501 * 109.47427 * 179.97438 * 16 14 13 18 18 C 1.34774 * 120.00287 * 179.97438 * 17 16 14 19 19 O 1.21700 * 120.00037 * 0.02562 * 18 17 16 20 20 C 1.46425 * 120.00095 * 180.27714 * 18 17 16 21 21 C 1.34802 * 120.00079 * 172.95141 * 20 18 17 22 22 C 1.47210 * 120.00101 * 349.10703 * 21 20 18 23 23 C 1.40270 * 120.58753 * 136.52985 * 22 21 20 24 24 C 1.38288 * 118.26661 * 179.97438 * 23 22 21 25 25 C 1.38391 * 119.33641 * 0.02562 * 24 23 22 26 26 N 1.31941 * 121.13831 * 0.02562 * 25 24 23 27 27 C 1.31668 * 121.90604 * 359.65310 * 26 25 24 28 28 H 1.08998 * 109.47277 * 59.99732 * 1 2 3 29 29 H 1.09004 * 109.46922 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46850 * 299.99847 * 1 2 3 31 31 H 1.08996 * 109.46720 * 240.00458 * 2 1 3 32 32 H 1.08995 * 109.47053 * 119.99791 * 2 1 3 33 33 H 0.96997 * 119.99573 * 180.02562 * 8 7 5 34 34 H 0.97000 * 119.99860 * 94.99739 * 13 3 2 35 35 H 1.09006 * 109.47415 * 59.99583 * 16 14 13 36 36 H 1.09006 * 109.47022 * 299.99579 * 16 14 13 37 37 H 0.96998 * 119.99562 * 0.02562 * 17 16 14 38 38 H 1.07997 * 119.99829 * 352.94936 * 20 18 17 39 39 H 1.08000 * 120.00020 * 169.11092 * 21 20 18 40 40 H 1.07996 * 120.86381 * 359.97438 * 23 22 21 41 41 H 1.07999 * 120.32613 * 180.02562 * 24 23 22 42 42 H 1.07996 * 119.43193 * 179.97438 * 25 24 23 43 43 H 1.07992 * 119.73750 * 180.31804 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8786 -1.2280 8 7 3.4062 0.3368 -2.1729 9 14 6.0050 0.8802 -1.3812 10 1 6.5539 -0.3518 -0.7599 11 1 6.3834 0.9217 -2.8166 12 1 6.5575 2.0721 -0.6890 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3394 2.6325 0.4343 16 6 0.0362 3.3376 2.6549 17 7 -1.3223 3.8707 2.5269 18 6 -1.8924 4.5184 3.5622 19 8 -1.2784 4.6608 4.6033 20 6 -3.2525 5.0460 3.4363 21 6 -3.8757 5.5667 4.5123 22 6 -3.2967 5.3921 5.8544 23 6 -3.2541 6.4639 6.7583 24 6 -2.7001 6.2462 8.0066 25 6 -2.2096 4.9910 8.3211 26 7 -2.2614 4.0005 7.4511 27 6 -2.7841 4.1538 6.2524 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0616 -2.9496 34 1 2.2720 2.1232 1.9977 35 1 0.7276 4.1530 2.8680 36 1 0.0673 2.6128 3.4685 37 1 -1.8117 3.7569 1.6972 38 1 -3.7563 5.0180 2.4815 39 1 -4.7998 6.1120 4.3896 40 1 -3.6439 7.4337 6.4866 41 1 -2.6507 7.0479 8.7286 42 1 -1.7762 4.8194 9.2953 43 1 -2.8131 3.3176 5.5696 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492577771.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:02 Heat of formation + Delta-G solvation = -38.223315 kcal Electronic energy + Delta-G solvation = -25575.983045 eV Core-core repulsion = 21813.865494 eV Total energy + Delta-G solvation = -3762.117551 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.49508 -40.85925 -39.98486 -37.12088 -35.65018 -35.03600 -34.34720 -33.01371 -32.87943 -31.08566 -29.58112 -28.21377 -25.37264 -24.81032 -24.30042 -22.96098 -22.02472 -21.23168 -20.76057 -19.08210 -18.43536 -17.87473 -17.56968 -17.24691 -17.00350 -16.86782 -16.64598 -16.12142 -15.74599 -15.50017 -15.11523 -14.68538 -14.60374 -14.37078 -14.30534 -14.09200 -13.89854 -13.66044 -13.54779 -13.20344 -13.16458 -12.92146 -12.67363 -12.60310 -12.17996 -12.07507 -11.59532 -11.33116 -11.08667 -11.05281 -10.80875 -10.59146 -10.53311 -10.24700 -10.06095 -9.67825 -9.23228 -8.17322 -6.34024 -0.33166 0.49715 0.83077 1.44208 1.44957 1.54832 1.70109 1.98385 2.29919 2.39484 2.72069 3.01573 3.12503 3.58217 3.76137 3.83779 3.95484 4.06990 4.09337 4.28328 4.33140 4.38143 4.50569 4.57181 4.57887 4.69824 4.75656 4.90464 5.05451 5.06532 5.18147 5.23144 5.29167 5.35358 5.42757 5.43401 5.54157 5.59359 5.78566 5.87835 5.89387 6.16206 6.52409 6.73350 6.87716 7.14924 7.20580 7.30739 7.47396 8.87789 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023939 B = 0.002398 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.356393 B =11671.925619 C =12159.959972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 C 0.279 3.721 4 H 0.005 0.995 5 C -0.549 4.549 6 H 0.070 0.930 7 C 0.017 3.983 8 N -0.913 5.913 9 Si 0.967 3.033 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.266 1.266 13 N -0.701 5.701 14 C 0.498 3.502 15 O -0.575 6.575 16 C 0.111 3.889 17 N -0.706 5.706 18 C 0.534 3.466 19 O -0.569 6.569 20 C -0.212 4.212 21 C -0.008 4.008 22 C -0.135 4.135 23 C -0.064 4.064 24 C -0.183 4.183 25 C 0.082 3.918 26 N -0.530 5.530 27 C 0.157 3.843 28 H 0.030 0.970 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.265 0.735 34 H 0.405 0.595 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.415 0.585 38 H 0.168 0.832 39 H 0.182 0.818 40 H 0.164 0.836 41 H 0.164 0.836 42 H 0.169 0.831 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.155 12.111 16.541 25.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.162 4.162 3 C 0.176 3.824 4 H 0.022 0.978 5 C -0.588 4.588 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.191 1.191 13 N -0.349 5.349 14 C 0.284 3.716 15 O -0.456 6.456 16 C -0.017 4.017 17 N -0.359 5.359 18 C 0.324 3.676 19 O -0.450 6.450 20 C -0.232 4.232 21 C -0.028 4.028 22 C -0.137 4.137 23 C -0.089 4.089 24 C -0.203 4.203 25 C -0.072 4.072 26 N -0.240 5.240 27 C -0.001 4.001 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.240 0.760 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.254 0.746 38 H 0.185 0.815 39 H 0.199 0.801 40 H 0.182 0.818 41 H 0.181 0.819 42 H 0.186 0.814 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.862 11.253 16.638 24.986 hybrid contribution 1.063 0.298 -0.941 1.451 sum -13.798 11.552 15.697 23.879 Atomic orbital electron populations 1.21673 0.96699 0.99215 1.00399 1.21802 0.94011 0.99092 1.01292 1.18400 0.93579 0.89225 0.81184 0.97759 1.21579 0.91565 1.38968 1.06639 0.91188 1.25720 1.03081 0.94427 0.95078 1.70034 1.36944 1.38268 1.09873 0.85415 0.79425 0.78779 0.77142 1.19831 1.21216 1.19071 1.46210 1.15304 1.55544 1.17876 1.20767 0.82336 0.78863 0.89606 1.90647 1.52058 1.61170 1.41730 1.20965 0.85905 0.99791 0.94995 1.45743 1.15645 1.56544 1.17998 1.19080 0.88624 0.77439 0.82415 1.90867 1.66012 1.59467 1.28693 1.23127 0.93307 1.04505 1.02290 1.22641 0.98759 0.92601 0.88831 1.20187 1.02032 0.95304 0.96137 1.22046 0.95529 0.98964 0.92371 1.22314 1.00671 0.98880 0.98406 1.23217 0.95732 0.89329 0.98961 1.67527 1.16501 1.35759 1.04198 1.22660 0.89718 0.96254 0.91466 0.95123 0.93759 0.93657 0.90982 0.94242 0.92583 0.76020 0.88099 0.87906 0.74625 0.81498 0.80075 0.81807 0.81888 0.81386 0.85262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.52 71.99 0.61 -4.64 16 2 C -0.12 -5.88 5.45 30.60 0.17 -5.71 16 3 C 0.28 13.78 2.24 44.24 0.10 13.88 16 4 H 0.00 0.26 7.58 -2.39 -0.02 0.24 16 5 C -0.55 -28.44 8.73 25.60 0.22 -28.22 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 0.92 5.29 84.65 0.45 1.36 16 8 N -0.91 -51.23 11.29 21.45 0.24 -50.99 16 9 Si 0.97 41.68 29.54 68.60 2.03 43.71 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 13 N -0.70 -27.37 5.02 -446.11 -2.24 -29.61 16 14 C 0.50 17.95 6.47 87.66 0.57 18.52 16 15 O -0.58 -24.08 12.81 -3.02 -0.04 -24.12 16 16 C 0.11 3.11 6.15 85.63 0.53 3.63 16 17 N -0.71 -17.94 5.52 -471.07 -2.60 -20.54 16 18 C 0.53 13.02 6.80 86.37 0.59 13.61 16 19 O -0.57 -17.35 12.14 -4.35 -0.05 -17.41 16 20 C -0.21 -3.37 9.92 23.61 0.23 -3.14 16 21 C -0.01 -0.11 9.84 23.84 0.23 0.12 16 22 C -0.13 -2.63 4.55 -20.05 -0.09 -2.72 16 23 C -0.06 -0.99 9.95 22.78 0.23 -0.77 16 24 C -0.18 -2.86 10.09 22.32 0.23 -2.63 16 25 C 0.08 1.70 11.17 84.71 0.95 2.64 16 26 N -0.53 -14.49 10.34 -194.51 -2.01 -16.50 16 27 C 0.16 4.04 7.78 85.10 0.66 4.70 16 28 H 0.03 1.40 7.85 -2.39 -0.02 1.38 16 29 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.04 1.84 5.65 -2.39 -0.01 1.83 16 31 H 0.07 3.88 5.95 -2.39 -0.01 3.87 16 32 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 34 H 0.40 13.60 8.54 -92.71 -0.79 12.81 16 35 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 36 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 37 H 0.42 10.24 7.42 -92.71 -0.69 9.55 16 38 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 39 H 0.18 0.86 8.06 -2.91 -0.02 0.84 16 40 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 41 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 42 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 43 H 0.13 3.47 7.02 -2.91 -0.02 3.45 16 Total: -1.00 -71.65 359.83 0.56 -71.09 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: -0.43 Total: 33.73 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 5.67 Total: 10.63 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -6.61 Total: -117.64 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -0.09 Total: -41.52 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -71.65 0.56 -71.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492577771.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.870 kcal (2) G-P(sol) polarization free energy of solvation -71.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds