Wall clock time and date at job start Tue Mar 31 2020 11:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86797 * 120.00069 * 333.95752 * 7 5 3 10 10 H 1.48494 * 109.47271 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.46948 * 300.00130 * 9 7 5 12 12 H 1.48501 * 109.47041 * 59.99513 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 N 1.46503 * 109.47013 * 179.97438 * 16 14 13 18 18 C 1.34769 * 120.00127 * 180.02562 * 17 16 14 19 19 O 1.21698 * 119.99657 * 0.02562 * 18 17 16 20 20 C 1.46423 * 120.00527 * 180.02562 * 18 17 16 21 21 C 1.34805 * 120.00506 * 180.02562 * 20 18 17 22 22 C 1.47207 * 119.99910 * 179.97438 * 21 20 18 23 23 C 1.40270 * 120.58395 * 180.02562 * 22 21 20 24 24 C 1.38291 * 118.26713 * 179.97438 * 23 22 21 25 25 C 1.38387 * 119.33107 * 359.97438 * 24 23 22 26 26 N 1.31932 * 121.14535 * 0.02741 * 25 24 23 27 27 C 1.31664 * 121.90156 * 359.67297 * 26 25 24 28 28 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 29 29 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 30 30 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 32 32 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 33 33 H 0.96993 * 119.99970 * 354.96768 * 8 7 5 34 34 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 35 35 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 36 36 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 37 37 H 0.97003 * 119.99711 * 0.02562 * 17 16 14 38 38 H 1.08003 * 119.99614 * 0.02562 * 20 18 17 39 39 H 1.08003 * 119.99880 * 0.02562 * 21 20 18 40 40 H 1.07997 * 120.86302 * 359.95306 * 23 22 21 41 41 H 1.08002 * 120.32857 * 180.02562 * 24 23 22 42 42 H 1.08005 * 119.42938 * 179.97438 * 25 24 23 43 43 H 1.07999 * 119.74186 * 180.29109 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1764 1.0612 2.9141 10 1 4.0190 0.5167 4.0089 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 7 -1.2924 3.8599 -2.5766 18 6 -1.8500 4.5038 -3.6210 19 8 -1.2234 4.6426 -4.6550 20 6 -3.2095 5.0364 -3.5116 21 6 -3.7674 5.6801 -4.5565 22 6 -5.1344 6.2150 -4.4466 23 6 -5.7270 6.8863 -5.5263 24 6 -7.0136 7.3689 -5.3709 25 6 -7.6693 7.1759 -4.1677 26 7 -7.0881 6.5406 -3.1680 27 6 -5.8675 6.0571 -3.2668 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.8116 0.4042 0.4384 34 1 2.2954 2.1150 -1.9977 35 1 0.7620 4.1421 -2.8933 36 1 0.1091 2.6000 -3.4965 37 1 -1.7918 3.7489 -1.7524 38 1 -3.7653 4.9136 -2.5938 39 1 -3.2117 5.8025 -5.4745 40 1 -5.1923 7.0230 -6.4546 41 1 -7.5020 7.8905 -6.1808 42 1 -8.6741 7.5525 -4.0444 43 1 -5.4270 5.5387 -2.4279 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492577772.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:07 Heat of formation + Delta-G solvation = -28.667216 kcal Electronic energy + Delta-G solvation = -24797.814042 eV Core-core repulsion = 21036.110875 eV Total energy + Delta-G solvation = -3761.703167 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.60060 -40.01741 -39.01791 -35.61090 -34.94073 -34.27319 -32.76741 -32.57366 -31.60728 -30.45399 -28.31662 -26.81828 -24.81740 -23.99973 -22.48049 -21.83852 -20.68464 -20.00736 -19.62752 -18.29264 -17.81177 -17.37799 -16.58080 -16.27052 -15.90630 -15.79049 -15.31734 -15.08954 -14.65642 -14.39815 -14.32735 -13.98565 -13.58493 -13.54599 -13.15031 -12.94511 -12.60439 -12.48281 -12.46209 -12.20996 -12.13546 -11.68635 -11.21783 -10.88167 -10.77178 -10.49269 -10.20743 -10.15137 -9.92566 -9.91563 -9.87239 -9.42581 -9.27312 -9.23631 -8.84050 -8.30766 -8.23137 -6.66513 -4.25933 -0.01912 0.76410 1.55083 2.93702 2.99009 3.09631 3.36749 3.42128 3.45571 3.57445 3.87240 3.93651 4.24839 4.31556 4.38071 4.39647 4.50138 4.73134 4.85558 5.02261 5.02745 5.15898 5.27276 5.38847 5.42021 5.47489 5.56817 5.87763 5.96445 6.00451 6.03202 6.17743 6.19145 6.24083 6.61775 6.72786 6.87035 6.96248 7.25627 7.30601 7.42071 7.47391 7.58557 8.05731 8.19316 8.33194 8.60030 8.81840 9.38968 10.71537 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028102 B = 0.002058 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.132902 B =13599.281868 C =14092.735212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.251 3.749 4 H 0.042 0.958 5 C -0.632 4.632 6 H 0.063 0.937 7 C 0.049 3.951 8 N -0.884 5.884 9 Si 1.030 2.970 10 H -0.283 1.283 11 H -0.281 1.281 12 H -0.274 1.274 13 N -0.694 5.694 14 C 0.496 3.504 15 O -0.550 6.550 16 C 0.097 3.903 17 N -0.706 5.706 18 C 0.547 3.453 19 O -0.549 6.549 20 C -0.194 4.194 21 C -0.026 4.026 22 C -0.122 4.122 23 C -0.055 4.055 24 C -0.174 4.174 25 C 0.103 3.897 26 N -0.484 5.484 27 C 0.117 3.883 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.031 0.969 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.272 0.728 34 H 0.396 0.604 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.414 0.586 38 H 0.132 0.868 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.158 0.842 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.948 10.947 -13.102 27.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C 0.148 3.852 4 H 0.060 0.940 5 C -0.669 4.669 6 H 0.081 0.919 7 C -0.160 4.160 8 N -0.515 5.515 9 Si 0.857 3.143 10 H -0.208 1.208 11 H -0.207 1.207 12 H -0.199 1.199 13 N -0.341 5.341 14 C 0.280 3.720 15 O -0.430 6.430 16 C -0.031 4.031 17 N -0.360 5.360 18 C 0.335 3.665 19 O -0.429 6.429 20 C -0.215 4.215 21 C -0.046 4.046 22 C -0.124 4.124 23 C -0.081 4.081 24 C -0.194 4.194 25 C -0.053 4.053 26 N -0.192 5.192 27 C -0.041 4.041 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.229 0.771 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.252 0.748 38 H 0.150 0.850 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.175 0.825 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -22.315 10.582 -10.711 26.920 hybrid contribution 0.530 0.341 -2.461 2.541 sum -21.786 10.923 -13.173 27.703 Atomic orbital electron populations 1.21892 0.97416 0.98959 1.01836 1.22240 0.93669 0.99655 1.01542 1.19061 0.95930 0.88502 0.81736 0.94049 1.21966 0.89604 1.50320 1.04969 0.91854 1.25618 0.96619 0.91642 1.02102 1.70867 1.13856 1.36157 1.30628 0.84215 0.76037 0.77614 0.76443 1.20821 1.20668 1.19931 1.46222 1.14114 1.55309 1.18471 1.20308 0.83253 0.79567 0.88840 1.90654 1.50732 1.60405 1.41183 1.21152 0.84821 0.99879 0.97234 1.45597 1.16015 1.56977 1.17391 1.18218 0.86779 0.78258 0.83231 1.90819 1.64115 1.58779 1.29175 1.22947 0.95398 1.02539 1.00573 1.22194 0.91504 0.92001 0.98928 1.20062 0.95349 1.01197 0.95813 1.21857 0.94655 0.93425 0.98134 1.22135 0.95743 1.01875 0.99613 1.22953 0.99862 0.93781 0.88707 1.67685 1.10911 1.09216 1.31382 1.23216 0.89742 0.94886 0.96262 0.92978 0.93397 0.95036 0.93083 0.91748 0.91801 0.77073 0.88591 0.88705 0.74802 0.84985 0.84234 0.84162 0.84327 0.82509 0.82111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.53 37.16 0.32 -2.45 16 2 C -0.13 -2.84 5.37 -26.73 -0.14 -2.99 16 3 C 0.25 5.71 1.84 -69.09 -0.13 5.58 16 4 H 0.04 1.03 6.12 -51.93 -0.32 0.71 16 5 C -0.63 -16.46 8.92 -34.44 -0.31 -16.77 16 6 H 0.06 1.73 7.96 -52.49 -0.42 1.31 16 7 C 0.05 1.33 5.15 -17.82 -0.09 1.24 16 8 N -0.88 -25.56 13.70 55.43 0.76 -24.80 16 9 Si 1.03 24.37 26.56 -169.99 -4.51 19.85 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.12 6.34 56.52 0.36 -5.76 16 13 N -0.69 -12.97 5.03 -54.93 -0.28 -13.25 16 14 C 0.50 8.46 6.50 -10.98 -0.07 8.39 16 15 O -0.55 -10.66 12.81 5.55 0.07 -10.59 16 16 C 0.10 1.31 6.15 -5.19 -0.03 1.28 16 17 N -0.71 -8.90 5.52 -62.88 -0.35 -9.25 16 18 C 0.55 6.85 7.74 -12.97 -0.10 6.75 16 19 O -0.55 -8.53 16.23 5.19 0.08 -8.44 16 20 C -0.19 -1.79 9.42 -37.51 -0.35 -2.14 16 21 C -0.03 -0.22 9.48 -37.16 -0.35 -0.57 16 22 C -0.12 -0.95 5.88 -104.91 -0.62 -1.57 16 23 C -0.06 -0.35 9.95 -38.80 -0.39 -0.73 16 24 C -0.17 -0.95 10.09 -39.51 -0.40 -1.35 16 25 C 0.10 0.70 11.17 -17.45 -0.19 0.50 16 26 N -0.48 -4.46 10.34 -12.83 -0.13 -4.59 16 27 C 0.12 0.98 10.59 -17.04 -0.18 0.80 16 28 H 0.05 1.04 7.89 -51.93 -0.41 0.63 16 29 H 0.05 0.89 5.63 -51.93 -0.29 0.60 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.47 5.77 -51.93 -0.30 1.17 16 33 H 0.27 7.77 8.73 -40.82 -0.36 7.42 16 34 H 0.40 6.61 8.53 -40.82 -0.35 6.26 16 35 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.41 4.97 7.42 -40.82 -0.30 4.66 16 38 H 0.13 0.91 6.10 -52.48 -0.32 0.59 16 39 H 0.14 1.20 7.52 -52.48 -0.39 0.80 16 40 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 41 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 42 H 0.16 0.64 8.06 -52.48 -0.42 0.22 16 43 H 0.16 1.08 6.19 -52.49 -0.32 0.76 16 LS Contribution 362.13 15.07 5.46 5.46 Total: -1.00 -32.66 362.13 -7.52 -40.18 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.58 Total: 9.46 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -3.04 Total: -4.04 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.00 Total: -51.89 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.16 Total: -19.03 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -4.51 Total: 19.85 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.66 -7.52 -40.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492577772.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.515 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds