Wall clock time and date at job start Tue Mar 31 2020 11:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86797 * 120.00069 * 333.95752 * 7 5 3 10 10 H 1.48494 * 109.47271 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.46948 * 300.00130 * 9 7 5 12 12 H 1.48501 * 109.47041 * 59.99513 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 N 1.46503 * 109.47013 * 179.97438 * 16 14 13 18 18 C 1.34769 * 120.00127 * 180.02562 * 17 16 14 19 19 O 1.21698 * 119.99657 * 0.02562 * 18 17 16 20 20 C 1.46423 * 120.00527 * 180.02562 * 18 17 16 21 21 C 1.34805 * 120.00506 * 180.02562 * 20 18 17 22 22 C 1.47207 * 119.99910 * 179.97438 * 21 20 18 23 23 C 1.40270 * 120.58395 * 180.02562 * 22 21 20 24 24 C 1.38291 * 118.26713 * 179.97438 * 23 22 21 25 25 C 1.38387 * 119.33107 * 359.97438 * 24 23 22 26 26 N 1.31932 * 121.14535 * 0.02741 * 25 24 23 27 27 C 1.31664 * 121.90156 * 359.67297 * 26 25 24 28 28 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 29 29 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 30 30 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 32 32 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 33 33 H 0.96993 * 119.99970 * 354.96768 * 8 7 5 34 34 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 35 35 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 36 36 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 37 37 H 0.97003 * 119.99711 * 0.02562 * 17 16 14 38 38 H 1.08003 * 119.99614 * 0.02562 * 20 18 17 39 39 H 1.08003 * 119.99880 * 0.02562 * 21 20 18 40 40 H 1.07997 * 120.86302 * 359.95306 * 23 22 21 41 41 H 1.08002 * 120.32857 * 180.02562 * 24 23 22 42 42 H 1.08005 * 119.42938 * 179.97438 * 25 24 23 43 43 H 1.07999 * 119.74186 * 180.29109 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1764 1.0612 2.9141 10 1 4.0190 0.5167 4.0089 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 7 -1.2924 3.8599 -2.5766 18 6 -1.8500 4.5038 -3.6210 19 8 -1.2234 4.6426 -4.6550 20 6 -3.2095 5.0364 -3.5116 21 6 -3.7674 5.6801 -4.5565 22 6 -5.1344 6.2150 -4.4466 23 6 -5.7270 6.8863 -5.5263 24 6 -7.0136 7.3689 -5.3709 25 6 -7.6693 7.1759 -4.1677 26 7 -7.0881 6.5406 -3.1680 27 6 -5.8675 6.0571 -3.2668 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.8116 0.4042 0.4384 34 1 2.2954 2.1150 -1.9977 35 1 0.7620 4.1421 -2.8933 36 1 0.1091 2.6000 -3.4965 37 1 -1.7918 3.7489 -1.7524 38 1 -3.7653 4.9136 -2.5938 39 1 -3.2117 5.8025 -5.4745 40 1 -5.1923 7.0230 -6.4546 41 1 -7.5020 7.8905 -6.1808 42 1 -8.6741 7.5525 -4.0444 43 1 -5.4270 5.5387 -2.4279 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492577772.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:07 Heat of formation + Delta-G solvation = -52.326659 kcal Electronic energy + Delta-G solvation = -24798.839993 eV Core-core repulsion = 21036.110875 eV Total energy + Delta-G solvation = -3762.729118 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.34756 -41.02100 -40.25345 -37.22243 -35.68491 -35.37074 -34.50840 -33.30551 -33.19344 -31.14633 -29.69226 -28.31649 -25.53429 -24.55833 -24.26771 -22.77437 -22.06460 -21.30397 -20.85334 -19.81272 -18.88676 -18.12933 -17.65279 -17.28173 -17.13854 -16.92243 -16.41033 -15.96588 -15.87052 -15.51424 -15.15990 -14.95574 -14.76858 -14.59153 -14.39506 -14.35750 -14.16640 -14.00532 -13.69781 -13.28966 -13.16343 -12.70470 -12.63782 -12.49611 -12.28386 -11.85903 -11.77402 -11.58198 -11.23526 -11.21221 -10.88540 -10.64547 -10.45082 -10.40696 -10.29592 -9.84470 -9.46372 -8.81291 -6.40420 -0.62619 0.28324 0.88461 1.47727 1.50146 1.62315 1.70500 1.88146 2.22662 2.43560 2.59245 2.90941 2.93690 3.40073 3.58421 3.75162 3.83152 3.91115 4.04765 4.16740 4.21796 4.29967 4.33003 4.37871 4.41720 4.55327 4.55856 4.80758 4.85792 4.93870 5.08352 5.11274 5.16659 5.22133 5.26721 5.30576 5.38025 5.55471 5.62285 5.70625 5.70749 6.03046 6.45074 6.54242 6.75485 6.95863 7.11193 7.24780 7.35310 8.55668 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028102 B = 0.002058 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.132902 B =13599.281868 C =14092.735212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.130 4.130 3 C 0.256 3.744 4 H 0.026 0.974 5 C -0.628 4.628 6 H 0.042 0.958 7 C 0.005 3.995 8 N -0.916 5.916 9 Si 1.064 2.936 10 H -0.284 1.284 11 H -0.273 1.273 12 H -0.253 1.253 13 N -0.698 5.698 14 C 0.501 3.499 15 O -0.570 6.570 16 C 0.107 3.893 17 N -0.706 5.706 18 C 0.548 3.452 19 O -0.584 6.584 20 C -0.209 4.209 21 C -0.007 4.007 22 C -0.137 4.137 23 C -0.057 4.057 24 C -0.169 4.169 25 C 0.095 3.905 26 N -0.516 5.516 27 C 0.104 3.896 28 H 0.042 0.958 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.261 0.739 34 H 0.405 0.595 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.418 0.582 38 H 0.153 0.847 39 H 0.138 0.862 40 H 0.162 0.838 41 H 0.170 0.830 42 H 0.180 0.820 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.646 11.802 -14.096 30.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.169 4.169 3 C 0.151 3.849 4 H 0.044 0.956 5 C -0.665 4.665 6 H 0.060 0.940 7 C -0.198 4.198 8 N -0.549 5.549 9 Si 0.886 3.114 10 H -0.209 1.209 11 H -0.198 1.198 12 H -0.178 1.178 13 N -0.346 5.346 14 C 0.287 3.713 15 O -0.451 6.451 16 C -0.020 4.020 17 N -0.359 5.359 18 C 0.339 3.661 19 O -0.466 6.466 20 C -0.229 4.229 21 C -0.027 4.027 22 C -0.139 4.139 23 C -0.082 4.082 24 C -0.188 4.188 25 C -0.061 4.061 26 N -0.225 5.225 27 C -0.053 4.053 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.240 0.760 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.256 0.744 38 H 0.171 0.829 39 H 0.156 0.844 40 H 0.180 0.820 41 H 0.188 0.812 42 H 0.197 0.803 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -25.036 11.446 -11.724 29.921 hybrid contribution 1.290 0.177 -2.282 2.627 sum -23.746 11.623 -14.006 29.918 Atomic orbital electron populations 1.21770 0.95324 1.00379 1.01556 1.22134 0.95445 0.98321 1.00965 1.18746 0.93483 0.89570 0.83109 0.95606 1.22153 0.91532 1.48833 1.03998 0.94020 1.26700 0.96732 0.91271 1.05092 1.70962 1.15097 1.38782 1.30043 0.83765 0.75852 0.78348 0.73433 1.20916 1.19821 1.17756 1.46032 1.15259 1.55802 1.17530 1.20751 0.82149 0.78666 0.89718 1.90645 1.51164 1.60937 1.42318 1.21035 0.85657 1.00175 0.95163 1.45607 1.15578 1.57001 1.17722 1.18646 0.87603 0.77491 0.82409 1.90799 1.65228 1.60246 1.30352 1.22886 0.94086 1.03917 1.02049 1.22252 0.91637 0.90439 0.98394 1.20064 0.95009 1.02350 0.96468 1.22226 0.95142 0.92415 0.98438 1.22479 0.95320 1.01101 0.99932 1.23467 1.00876 0.92990 0.88745 1.67695 1.11473 1.10515 1.32810 1.23397 0.89874 0.95160 0.96859 0.93889 0.92987 0.92769 0.92886 0.93161 0.92936 0.75986 0.87734 0.87316 0.74361 0.82920 0.84440 0.82043 0.81212 0.80261 0.81438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.84 8.53 71.98 0.61 -4.23 16 2 C -0.13 -5.43 5.37 30.60 0.16 -5.27 16 3 C 0.26 11.49 1.84 44.25 0.08 11.57 16 4 H 0.03 1.27 6.12 -2.39 -0.01 1.25 16 5 C -0.63 -33.06 8.92 25.60 0.23 -32.83 16 6 H 0.04 2.33 7.96 -2.91 -0.02 2.30 16 7 C 0.01 0.28 5.15 84.66 0.44 0.71 16 8 N -0.92 -54.03 13.70 21.45 0.29 -53.73 16 9 Si 1.06 49.03 26.56 68.60 1.82 50.85 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.25 -10.76 6.34 99.48 0.63 -10.13 16 13 N -0.70 -25.51 5.03 -446.10 -2.24 -27.75 16 14 C 0.50 16.42 6.50 87.66 0.57 16.99 16 15 O -0.57 -21.30 12.81 -3.04 -0.04 -21.33 16 16 C 0.11 2.74 6.15 85.63 0.53 3.26 16 17 N -0.71 -16.81 5.52 -471.08 -2.60 -19.42 16 18 C 0.55 13.12 7.74 86.38 0.67 13.79 16 19 O -0.58 -17.64 16.23 -4.34 -0.07 -17.71 16 20 C -0.21 -3.61 9.42 23.61 0.22 -3.38 16 21 C -0.01 -0.10 9.48 23.84 0.23 0.12 16 22 C -0.14 -1.92 5.88 -20.05 -0.12 -2.04 16 23 C -0.06 -0.58 9.95 22.78 0.23 -0.35 16 24 C -0.17 -1.37 10.09 22.32 0.23 -1.14 16 25 C 0.10 1.09 11.17 84.71 0.95 2.03 16 26 N -0.52 -8.88 10.34 -194.52 -2.01 -10.89 16 27 C 0.10 1.64 10.59 85.10 0.90 2.54 16 28 H 0.04 1.63 7.89 -2.39 -0.02 1.61 16 29 H 0.05 1.83 5.63 -2.39 -0.01 1.82 16 30 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.05 2.23 5.77 -2.39 -0.01 2.22 16 33 H 0.26 15.44 8.73 -92.71 -0.81 14.63 16 34 H 0.41 13.27 8.53 -92.71 -0.79 12.48 16 35 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.42 9.44 7.42 -92.71 -0.69 8.75 16 38 H 0.15 1.90 6.10 -2.91 -0.02 1.88 16 39 H 0.14 2.19 7.52 -2.91 -0.02 2.17 16 40 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 41 H 0.17 0.26 8.06 -2.91 -0.02 0.23 16 42 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 43 H 0.17 2.12 6.19 -2.91 -0.02 2.10 16 Total: -1.00 -70.45 362.13 0.54 -69.91 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: -0.53 Total: 28.29 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 5.92 Total: 1.78 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -6.56 Total: -111.79 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -0.11 Total: -39.05 kcal Atomic # 14 Polarization: 49.03 SS G_CDS: 1.82 Total: 50.85 kcal Total: -70.45 0.54 -69.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492577772.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.586 kcal (2) G-P(sol) polarization free energy of solvation -70.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds