Wall clock time and date at job start Tue Mar 31 2020 11:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47270 * 2 1 4 4 H 1.09005 * 109.46817 * 304.99285 * 3 2 1 5 5 C 1.50703 * 109.47222 * 185.00109 * 3 2 1 6 6 H 1.08001 * 119.99649 * 240.00200 * 5 3 2 7 7 C 1.37877 * 120.00095 * 59.99175 * 5 3 2 8 8 N 1.31512 * 120.00062 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99824 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47216 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47013 * 120.00265 * 9 7 5 12 12 H 1.48502 * 109.47128 * 240.00529 * 9 7 5 13 13 N 1.46495 * 109.47553 * 64.99524 * 3 2 1 14 14 C 1.34768 * 120.00372 * 275.00631 * 13 3 2 15 15 O 1.21285 * 120.00145 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00264 * 179.97438 * 14 13 3 17 17 N 1.46505 * 109.47131 * 179.97438 * 16 14 13 18 18 C 1.34777 * 119.99724 * 180.02562 * 17 16 14 19 19 O 1.21693 * 120.00201 * 359.97438 * 18 17 16 20 20 C 1.46425 * 119.99668 * 179.97438 * 18 17 16 21 21 C 1.34808 * 119.99920 * 179.97438 * 20 18 17 22 22 C 1.47207 * 120.00030 * 179.72181 * 21 20 18 23 23 C 1.40274 * 120.58671 * 180.27503 * 22 21 20 24 24 C 1.38285 * 118.26464 * 179.97438 * 23 22 21 25 25 C 1.38390 * 119.33667 * 0.02562 * 24 23 22 26 26 N 1.31936 * 121.14240 * 0.02562 * 25 24 23 27 27 C 1.31666 * 121.90014 * 359.67580 * 26 25 24 28 28 H 1.08995 * 109.47474 * 300.00245 * 1 2 3 29 29 H 1.09002 * 109.47202 * 60.00411 * 1 2 3 30 30 H 1.08998 * 109.47227 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47265 * 239.99243 * 2 1 3 32 32 H 1.09008 * 109.46893 * 119.99915 * 2 1 3 33 33 H 0.97002 * 119.99874 * 179.97438 * 8 7 5 34 34 H 0.97003 * 119.99825 * 94.99910 * 13 3 2 35 35 H 1.09003 * 109.47039 * 60.00266 * 16 14 13 36 36 H 1.08993 * 109.47358 * 299.99948 * 16 14 13 37 37 H 0.97000 * 119.99792 * 359.97438 * 17 16 14 38 38 H 1.08001 * 120.00362 * 0.02562 * 20 18 17 39 39 H 1.08002 * 120.00248 * 0.02562 * 21 20 18 40 40 H 1.07993 * 120.86536 * 359.96328 * 23 22 21 41 41 H 1.08004 * 120.32758 * 180.02562 * 24 23 22 42 42 H 1.08006 * 119.42923 * 179.97438 * 25 24 23 43 43 H 1.08003 * 119.73852 * 180.29384 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5989 1.5441 -0.1930 11 1 6.4962 -0.5192 -1.4624 12 1 6.4001 1.6154 -2.6091 13 7 1.6524 2.0975 1.2517 14 6 0.4352 2.6644 1.3668 15 8 -0.3393 2.6326 0.4340 16 6 0.0363 3.3378 2.6546 17 7 -1.3222 3.8711 2.5265 18 6 -1.8919 4.5198 3.5614 19 8 -1.2780 4.6622 4.6025 20 6 -3.2495 5.0532 3.4331 21 6 -3.8195 5.7016 4.4685 22 6 -5.1820 6.2433 4.3374 23 6 -5.7848 6.9251 5.4049 24 6 -7.0662 7.4145 5.2292 25 6 -7.7070 7.2179 4.0185 26 7 -7.1169 6.5718 3.0311 27 6 -5.8963 6.0914 3.1453 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.8293 -0.0607 -2.9501 34 1 2.2719 2.1232 1.9977 35 1 0.7277 4.1532 2.8676 36 1 0.0673 2.6133 3.4683 37 1 -1.8113 3.7579 1.6965 38 1 -3.7944 4.9265 2.5093 39 1 -3.2747 5.8280 5.3924 40 1 -5.2619 7.0640 6.3395 41 1 -7.5617 7.9450 6.0289 42 1 -8.7080 7.5991 3.8799 43 1 -5.4449 5.5722 2.3128 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492577774.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:16 Heat of formation + Delta-G solvation = -28.391295 kcal Electronic energy + Delta-G solvation = -24718.287846 eV Core-core repulsion = 20956.596644 eV Total energy + Delta-G solvation = -3761.691202 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.55936 -39.91492 -38.86747 -35.43393 -34.88190 -34.17867 -32.73069 -32.49843 -31.12702 -30.38522 -28.17484 -26.63991 -24.78175 -23.96859 -23.05217 -21.74473 -20.48150 -19.92153 -19.43228 -18.16379 -17.60083 -16.86589 -16.51437 -15.99232 -15.75740 -15.60070 -15.15460 -15.07426 -14.53443 -14.43220 -14.31435 -14.15380 -13.67467 -13.51698 -12.99090 -12.75113 -12.71759 -12.43362 -12.17107 -11.89614 -11.51302 -11.31469 -11.17456 -11.01940 -10.89322 -10.36738 -10.28392 -10.12588 -10.11627 -9.87937 -9.70469 -9.23001 -9.19435 -9.10318 -8.79209 -8.56414 -7.95741 -6.17784 -4.27377 0.02272 0.79861 1.59561 3.02360 3.10151 3.20123 3.21391 3.29256 3.31799 3.49550 3.94262 4.02499 4.29371 4.33110 4.35314 4.41710 4.53764 4.77512 4.91030 5.06635 5.13880 5.30749 5.31971 5.48788 5.49981 5.51953 5.60330 5.92687 6.00752 6.21826 6.30410 6.32960 6.38424 6.58633 6.96826 7.11215 7.26401 7.32796 7.49156 7.50989 7.54722 7.65023 7.82361 8.11000 8.13151 8.52622 8.68865 8.96293 9.39917 10.87549 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.031407 B = 0.001941 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.302419 B =14422.534006 C =14846.518496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.700 5.700 14 C 0.496 3.504 15 O -0.548 6.548 16 C 0.096 3.904 17 N -0.705 5.705 18 C 0.546 3.454 19 O -0.550 6.550 20 C -0.193 4.193 21 C -0.027 4.027 22 C -0.121 4.121 23 C -0.055 4.055 24 C -0.174 4.174 25 C 0.103 3.897 26 N -0.484 5.484 27 C 0.117 3.883 28 H 0.037 0.963 29 H 0.050 0.950 30 H 0.023 0.977 31 H 0.100 0.900 32 H 0.032 0.968 33 H 0.264 0.736 34 H 0.392 0.608 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.414 0.586 38 H 0.132 0.868 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.157 0.843 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.249 11.120 14.050 24.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.348 5.348 14 C 0.279 3.721 15 O -0.428 6.428 16 C -0.032 4.032 17 N -0.359 5.359 18 C 0.335 3.665 19 O -0.430 6.430 20 C -0.213 4.213 21 C -0.048 4.048 22 C -0.123 4.123 23 C -0.081 4.081 24 C -0.194 4.194 25 C -0.054 4.054 26 N -0.192 5.192 27 C -0.041 4.041 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.118 0.882 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.224 0.776 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.252 0.748 38 H 0.150 0.850 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.175 0.825 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -17.758 10.944 13.087 24.625 hybrid contribution 1.560 -0.026 0.625 1.680 sum -16.198 10.918 13.713 23.867 Atomic orbital electron populations 1.21835 0.98337 0.98147 1.01102 1.21945 0.92619 0.99722 1.02441 1.18846 0.94386 0.89215 0.80709 0.93147 1.21261 0.90604 1.39117 1.06391 0.91927 1.24888 0.98701 0.94736 0.95362 1.69897 1.35104 1.37565 1.09323 0.86389 0.84742 0.77802 0.78148 1.19711 1.20858 1.20873 1.46450 1.14221 1.55267 1.18862 1.20224 0.83379 0.79739 0.88709 1.90663 1.51421 1.60382 1.40311 1.21177 0.84694 0.99766 0.97539 1.45609 1.16288 1.56611 1.17356 1.18213 0.86664 0.78311 0.83351 1.90812 1.64773 1.58934 1.28502 1.22967 0.95394 1.02381 1.00582 1.22187 0.91417 0.92168 0.99017 1.20066 0.95460 1.01051 0.95762 1.21851 0.94560 0.93420 0.98282 1.22130 0.95875 1.01914 0.99468 1.22950 0.99837 0.93755 0.88811 1.67688 1.10458 1.09179 1.31869 1.23225 0.89825 0.94951 0.96120 0.94413 0.93113 0.95778 0.88177 0.94934 0.92560 0.77569 0.88754 0.88827 0.74788 0.84985 0.84250 0.84179 0.84355 0.82531 0.82083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.52 37.16 0.32 -2.59 16 2 C -0.13 -3.00 5.45 -26.73 -0.15 -3.15 16 3 C 0.27 6.47 2.24 -69.09 -0.15 6.31 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.54 -13.66 8.73 -34.44 -0.30 -13.96 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -24.09 11.29 55.43 0.63 -23.46 16 9 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.70 -13.47 5.02 -54.94 -0.28 -13.75 16 14 C 0.50 8.85 6.47 -10.99 -0.07 8.78 16 15 O -0.55 -11.31 12.81 5.55 0.07 -11.24 16 16 C 0.10 1.35 6.15 -5.19 -0.03 1.32 16 17 N -0.71 -9.31 5.52 -62.88 -0.35 -9.66 16 18 C 0.55 7.08 7.74 -12.96 -0.10 6.98 16 19 O -0.55 -8.73 16.23 5.20 0.08 -8.65 16 20 C -0.19 -1.86 9.42 -37.50 -0.35 -2.21 16 21 C -0.03 -0.24 9.48 -37.16 -0.35 -0.59 16 22 C -0.12 -0.98 5.88 -104.91 -0.62 -1.60 16 23 C -0.06 -0.36 9.95 -38.80 -0.39 -0.75 16 24 C -0.17 -1.00 10.09 -39.51 -0.40 -1.40 16 25 C 0.10 0.72 11.17 -17.45 -0.19 0.53 16 26 N -0.48 -4.61 10.34 -12.83 -0.13 -4.74 16 27 C 0.12 1.02 10.59 -17.04 -0.18 0.84 16 28 H 0.04 0.77 5.65 -51.93 -0.29 0.47 16 29 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 32 H 0.03 0.73 8.14 -51.92 -0.42 0.30 16 33 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.39 6.53 8.54 -40.82 -0.35 6.18 16 35 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.41 5.28 7.42 -40.82 -0.30 4.98 16 38 H 0.13 0.97 6.10 -52.49 -0.32 0.65 16 39 H 0.14 1.24 7.52 -52.49 -0.39 0.84 16 40 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.14 0.41 8.06 -52.48 -0.42 -0.01 16 42 H 0.16 0.68 8.06 -52.48 -0.42 0.25 16 43 H 0.16 1.15 6.19 -52.48 -0.32 0.82 16 LS Contribution 364.83 15.07 5.50 5.50 Total: -1.00 -31.91 364.83 -8.16 -40.06 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -5.59 Total: 10.59 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -3.07 Total: 0.15 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.13 Total: -51.60 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.16 Total: -19.89 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.91 -8.16 -40.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492577774.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.673 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds