Wall clock time and date at job start Tue Mar 31 2020 11:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47270 * 2 1 4 4 H 1.09005 * 109.46817 * 304.99285 * 3 2 1 5 5 C 1.50703 * 109.47222 * 185.00109 * 3 2 1 6 6 H 1.08001 * 119.99649 * 240.00200 * 5 3 2 7 7 C 1.37877 * 120.00095 * 59.99175 * 5 3 2 8 8 N 1.31512 * 120.00062 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99824 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47216 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47013 * 120.00265 * 9 7 5 12 12 H 1.48502 * 109.47128 * 240.00529 * 9 7 5 13 13 N 1.46495 * 109.47553 * 64.99524 * 3 2 1 14 14 C 1.34768 * 120.00372 * 275.00631 * 13 3 2 15 15 O 1.21285 * 120.00145 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00264 * 179.97438 * 14 13 3 17 17 N 1.46505 * 109.47131 * 179.97438 * 16 14 13 18 18 C 1.34777 * 119.99724 * 180.02562 * 17 16 14 19 19 O 1.21693 * 120.00201 * 359.97438 * 18 17 16 20 20 C 1.46425 * 119.99668 * 179.97438 * 18 17 16 21 21 C 1.34808 * 119.99920 * 179.97438 * 20 18 17 22 22 C 1.47207 * 120.00030 * 179.72181 * 21 20 18 23 23 C 1.40274 * 120.58671 * 180.27503 * 22 21 20 24 24 C 1.38285 * 118.26464 * 179.97438 * 23 22 21 25 25 C 1.38390 * 119.33667 * 0.02562 * 24 23 22 26 26 N 1.31936 * 121.14240 * 0.02562 * 25 24 23 27 27 C 1.31666 * 121.90014 * 359.67580 * 26 25 24 28 28 H 1.08995 * 109.47474 * 300.00245 * 1 2 3 29 29 H 1.09002 * 109.47202 * 60.00411 * 1 2 3 30 30 H 1.08998 * 109.47227 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47265 * 239.99243 * 2 1 3 32 32 H 1.09008 * 109.46893 * 119.99915 * 2 1 3 33 33 H 0.97002 * 119.99874 * 179.97438 * 8 7 5 34 34 H 0.97003 * 119.99825 * 94.99910 * 13 3 2 35 35 H 1.09003 * 109.47039 * 60.00266 * 16 14 13 36 36 H 1.08993 * 109.47358 * 299.99948 * 16 14 13 37 37 H 0.97000 * 119.99792 * 359.97438 * 17 16 14 38 38 H 1.08001 * 120.00362 * 0.02562 * 20 18 17 39 39 H 1.08002 * 120.00248 * 0.02562 * 21 20 18 40 40 H 1.07993 * 120.86536 * 359.96328 * 23 22 21 41 41 H 1.08004 * 120.32758 * 180.02562 * 24 23 22 42 42 H 1.08006 * 119.42923 * 179.97438 * 25 24 23 43 43 H 1.08003 * 119.73852 * 180.29384 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5989 1.5441 -0.1930 11 1 6.4962 -0.5192 -1.4624 12 1 6.4001 1.6154 -2.6091 13 7 1.6524 2.0975 1.2517 14 6 0.4352 2.6644 1.3668 15 8 -0.3393 2.6326 0.4340 16 6 0.0363 3.3378 2.6546 17 7 -1.3222 3.8711 2.5265 18 6 -1.8919 4.5198 3.5614 19 8 -1.2780 4.6622 4.6025 20 6 -3.2495 5.0532 3.4331 21 6 -3.8195 5.7016 4.4685 22 6 -5.1820 6.2433 4.3374 23 6 -5.7848 6.9251 5.4049 24 6 -7.0662 7.4145 5.2292 25 6 -7.7070 7.2179 4.0185 26 7 -7.1169 6.5718 3.0311 27 6 -5.8963 6.0914 3.1453 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.8293 -0.0607 -2.9501 34 1 2.2719 2.1232 1.9977 35 1 0.7277 4.1532 2.8676 36 1 0.0673 2.6133 3.4683 37 1 -1.8113 3.7579 1.6965 38 1 -3.7944 4.9265 2.5093 39 1 -3.2747 5.8280 5.3924 40 1 -5.2619 7.0640 6.3395 41 1 -7.5617 7.9450 6.0289 42 1 -8.7080 7.5991 3.8799 43 1 -5.4449 5.5722 2.3128 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492577774.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:15 Heat of formation + Delta-G solvation = -50.582247 kcal Electronic energy + Delta-G solvation = -24719.250118 eV Core-core repulsion = 20956.596644 eV Total energy + Delta-G solvation = -3762.653474 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.29707 -40.98653 -40.18921 -37.10260 -35.66287 -35.33797 -34.33583 -33.26366 -32.87182 -31.12559 -29.59017 -28.21966 -25.58837 -24.87259 -24.49714 -22.67788 -21.97729 -21.21896 -20.77606 -19.21936 -18.55180 -17.99692 -17.59803 -17.12797 -17.05648 -16.85234 -16.59022 -15.93997 -15.91880 -15.73084 -15.10375 -14.94408 -14.72476 -14.59056 -14.33974 -14.13774 -13.99691 -13.58387 -13.22272 -13.16825 -13.14680 -12.88016 -12.70153 -12.69677 -12.14865 -12.06327 -11.84894 -11.58005 -11.19412 -11.03758 -10.79811 -10.63690 -10.52770 -10.44352 -10.26192 -9.66818 -9.45347 -8.16342 -6.32890 -0.61604 0.29012 0.89713 1.43960 1.46035 1.56889 1.72060 1.93636 2.24393 2.39575 2.70754 2.91621 3.13695 3.40984 3.60048 3.81029 3.88597 3.92081 4.05769 4.18549 4.22804 4.36076 4.41071 4.51686 4.56679 4.59033 4.76909 4.81390 4.94868 5.07381 5.09188 5.19307 5.26407 5.30821 5.39026 5.44209 5.55649 5.60924 5.71428 5.79940 5.90787 6.17498 6.47084 6.75080 6.89016 6.96547 7.13301 7.32371 7.49556 8.88947 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.031407 B = 0.001941 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.302419 B =14422.534006 C =14846.518496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 C 0.278 3.722 4 H 0.004 0.996 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.913 5.913 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.285 1.285 13 N -0.699 5.699 14 C 0.497 3.503 15 O -0.577 6.577 16 C 0.108 3.892 17 N -0.707 5.707 18 C 0.548 3.452 19 O -0.583 6.583 20 C -0.210 4.210 21 C -0.006 4.006 22 C -0.136 4.136 23 C -0.056 4.056 24 C -0.169 4.169 25 C 0.095 3.905 26 N -0.517 5.517 27 C 0.103 3.897 28 H 0.046 0.954 29 H 0.028 0.972 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.264 0.736 34 H 0.406 0.594 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.416 0.584 38 H 0.151 0.849 39 H 0.139 0.861 40 H 0.163 0.837 41 H 0.171 0.829 42 H 0.180 0.820 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.828 12.102 16.234 26.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.162 4.162 3 C 0.175 3.825 4 H 0.022 0.978 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.211 1.211 13 N -0.348 5.348 14 C 0.283 3.717 15 O -0.458 6.458 16 C -0.019 4.019 17 N -0.360 5.360 18 C 0.339 3.661 19 O -0.465 6.465 20 C -0.230 4.230 21 C -0.027 4.027 22 C -0.139 4.139 23 C -0.082 4.082 24 C -0.188 4.188 25 C -0.061 4.061 26 N -0.226 5.226 27 C -0.054 4.054 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.241 0.759 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.255 0.745 38 H 0.169 0.831 39 H 0.157 0.843 40 H 0.181 0.819 41 H 0.189 0.811 42 H 0.197 0.803 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -18.343 11.939 15.298 26.703 hybrid contribution 1.600 -0.245 -0.006 1.619 sum -16.743 11.694 15.293 25.513 Atomic orbital electron populations 1.21675 0.96759 0.99195 1.00409 1.21798 0.93948 0.99097 1.01331 1.18406 0.93612 0.89236 0.81245 0.97846 1.21619 0.91542 1.38768 1.06623 0.91014 1.25729 1.03077 0.94477 0.95139 1.70042 1.36878 1.38412 1.09850 0.85361 0.79457 0.77743 0.78146 1.18545 1.20592 1.21121 1.46184 1.15282 1.55498 1.17871 1.20789 0.82354 0.78879 0.89633 1.90657 1.52128 1.61193 1.41802 1.21058 0.85538 1.00155 0.95174 1.45642 1.15927 1.56748 1.17681 1.18624 0.87475 0.77518 0.82508 1.90790 1.65831 1.60330 1.29570 1.22894 0.94131 1.03941 1.02063 1.22254 0.91516 0.90443 0.98459 1.20067 0.95147 1.02245 0.96394 1.22227 0.95002 0.92329 0.98600 1.22483 0.95453 1.01127 0.99736 1.23474 1.00831 0.92928 0.88879 1.67694 1.11012 1.10510 1.33351 1.23388 0.89996 0.95270 0.96725 0.93550 0.95249 0.93787 0.91058 0.94089 0.92633 0.75866 0.87510 0.87258 0.74545 0.83129 0.84298 0.81945 0.81146 0.80251 0.81587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.25 8.52 71.98 0.61 -4.63 16 2 C -0.12 -5.81 5.45 30.59 0.17 -5.64 16 3 C 0.28 13.59 2.24 44.25 0.10 13.69 16 4 H 0.00 0.21 7.58 -2.38 -0.02 0.19 16 5 C -0.55 -28.03 8.73 25.60 0.22 -27.81 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.91 -51.11 11.29 21.45 0.24 -50.87 16 9 Si 0.97 41.42 29.54 68.60 2.03 43.44 16 10 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 12 H -0.29 -12.23 7.11 99.48 0.71 -11.53 16 13 N -0.70 -26.70 5.02 -446.11 -2.24 -28.94 16 14 C 0.50 17.60 6.47 87.66 0.57 18.16 16 15 O -0.58 -24.08 12.81 -3.04 -0.04 -24.12 16 16 C 0.11 2.91 6.15 85.63 0.53 3.44 16 17 N -0.71 -18.10 5.52 -471.08 -2.60 -20.71 16 18 C 0.55 13.78 7.74 86.37 0.67 14.45 16 19 O -0.58 -17.99 16.23 -4.33 -0.07 -18.06 16 20 C -0.21 -3.88 9.42 23.62 0.22 -3.66 16 21 C -0.01 -0.10 9.48 23.84 0.23 0.12 16 22 C -0.14 -2.03 5.88 -20.05 -0.12 -2.14 16 23 C -0.06 -0.60 9.95 22.78 0.23 -0.37 16 24 C -0.17 -1.45 10.09 22.32 0.23 -1.23 16 25 C 0.09 1.15 11.17 84.71 0.95 2.09 16 26 N -0.52 -9.37 10.34 -194.50 -2.01 -11.38 16 27 C 0.10 1.73 10.59 85.10 0.90 2.63 16 28 H 0.05 1.87 5.65 -2.39 -0.01 1.85 16 29 H 0.03 1.34 7.85 -2.39 -0.02 1.32 16 30 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.07 3.82 5.95 -2.39 -0.01 3.81 16 32 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 34 H 0.41 13.10 8.54 -92.71 -0.79 12.30 16 35 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.42 10.46 7.42 -92.71 -0.69 9.77 16 38 H 0.15 2.12 6.10 -2.91 -0.02 2.11 16 39 H 0.14 2.29 7.52 -2.91 -0.02 2.27 16 40 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 41 H 0.17 0.32 8.06 -2.91 -0.02 0.30 16 42 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 43 H 0.17 2.34 6.19 -2.91 -0.02 2.32 16 Total: -1.00 -69.91 364.83 0.83 -69.08 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: -0.42 Total: 31.15 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 5.94 Total: 10.40 kcal Atomic # 7 Polarization: -105.28 SS G_CDS: -6.61 Total: -111.90 kcal Atomic # 8 Polarization: -42.08 SS G_CDS: -0.11 Total: -42.18 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Total: -69.91 0.83 -69.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492577774.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.497 kcal (2) G-P(sol) polarization free energy of solvation -69.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds