Wall clock time and date at job start Tue Mar 31 2020 11:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5 12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21694 * 120.00256 * 359.97438 * 14 13 3 16 16 C 1.46430 * 119.99690 * 179.97438 * 14 13 3 17 17 C 1.34800 * 119.99768 * 179.97438 * 16 14 13 18 18 C 1.47228 * 119.99996 * 180.02562 * 17 16 14 19 19 C 1.39931 * 120.51879 * 359.97438 * 18 17 16 20 20 N 1.31697 * 120.84143 * 180.02562 * 19 18 17 21 21 C 1.31770 * 122.06886 * 359.97438 * 20 19 18 22 22 C 1.39656 * 120.94758 * 359.97438 * 21 20 19 23 23 C 1.47854 * 120.48077 * 180.02562 * 22 21 20 24 24 O 1.21545 * 120.00220 * 180.02562 * 23 22 21 25 25 N 1.34781 * 120.00060 * 0.02562 * 23 22 21 26 26 C 1.46501 * 120.00166 * 179.97438 * 25 23 22 27 27 C 1.39721 * 119.04177 * 359.75089 * 22 21 20 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 34 34 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 35 35 H 1.07995 * 120.00267 * 0.02562 * 16 14 13 36 36 H 1.08003 * 119.99966 * 0.02562 * 17 16 14 37 37 H 1.08000 * 119.58059 * 359.97438 * 19 18 17 38 38 H 1.08003 * 119.52820 * 180.02562 * 21 20 19 39 39 H 0.97000 * 119.99907 * 0.02562 * 25 23 22 40 40 H 1.08993 * 109.47668 * 300.00470 * 26 25 23 41 41 H 1.09007 * 109.46658 * 60.00871 * 26 25 23 42 42 H 1.08999 * 109.47134 * 180.02562 * 26 25 23 43 43 H 1.08000 * 120.92955 * 180.27027 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5453 -0.1938 11 1 6.4963 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6093 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3419 2.6326 0.4310 16 6 0.0477 3.3185 2.6184 17 6 -1.1696 3.8860 2.7334 18 6 -1.5591 4.5442 3.9915 19 6 -0.6744 4.5866 5.0748 20 7 -1.0163 5.1733 6.2032 21 6 -2.1932 5.7430 6.3669 22 6 -3.1376 5.7487 5.3381 23 6 -4.4548 6.3915 5.5329 24 8 -5.2705 6.3910 4.6317 25 7 -4.7511 6.9780 6.7096 26 6 -6.0560 7.6154 6.9024 27 6 -2.8176 5.1434 4.1202 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8292 -0.0604 -2.9503 34 1 2.2720 2.1231 1.9978 35 1 0.7374 3.3470 3.4489 36 1 -1.8592 3.8578 1.9027 37 1 0.3010 4.1317 4.9847 38 1 -2.4305 6.2129 7.3099 39 1 -4.1001 6.9787 7.4287 40 1 -6.1821 8.4137 6.1713 41 1 -6.8450 6.8747 6.7714 42 1 -6.1118 8.0320 7.9081 43 1 -3.5233 5.1339 3.3027 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492578656.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:40 Heat of formation + Delta-G solvation = -25.591765 kcal Electronic energy + Delta-G solvation = -24880.854053 eV Core-core repulsion = 21119.284247 eV Total energy + Delta-G solvation = -3761.569806 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.99518 -39.46437 -38.98146 -35.43922 -35.15809 -34.38370 -32.83060 -32.38995 -31.11695 -30.06923 -27.52286 -27.08153 -25.13056 -23.95925 -23.12739 -22.21192 -20.89313 -19.68137 -19.31386 -18.41023 -17.54570 -17.31292 -16.53312 -16.01508 -15.75200 -15.72027 -15.18360 -14.77720 -14.51081 -14.30511 -14.25920 -14.03238 -13.50275 -13.34980 -13.26693 -12.82614 -12.69512 -12.54836 -12.10094 -12.00297 -11.55908 -11.26941 -10.99722 -10.96958 -10.84251 -10.72476 -10.32505 -10.19367 -10.05523 -9.83093 -9.65221 -9.63392 -9.15135 -9.04670 -8.64204 -8.51815 -7.83216 -6.13934 -4.23406 0.04475 0.52137 1.82332 2.51033 2.63827 3.22661 3.30745 3.33106 3.48325 3.77426 3.95316 3.99914 4.23465 4.33284 4.34817 4.49590 4.57029 4.74621 4.79130 5.03378 5.04118 5.17672 5.25110 5.33001 5.50903 5.57854 5.68052 5.82240 6.10221 6.29436 6.35343 6.38963 6.45541 6.65564 6.90514 7.03400 7.19404 7.35058 7.42005 7.42243 7.60823 7.68673 7.72066 7.88569 8.16529 8.63450 8.75789 9.09354 9.43992 10.91451 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029684 B = 0.002107 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.034248 B =13283.068608 C =13844.928009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.699 5.699 14 C 0.526 3.474 15 O -0.548 6.548 16 C -0.171 4.171 17 C -0.056 4.056 18 C -0.109 4.109 19 C 0.134 3.866 20 N -0.482 5.482 21 C 0.131 3.869 22 C -0.190 4.190 23 C 0.565 3.435 24 O -0.529 6.529 25 N -0.732 5.732 26 C 0.087 3.913 27 C -0.001 4.001 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.022 0.978 31 H 0.031 0.969 32 H 0.099 0.901 33 H 0.264 0.736 34 H 0.389 0.611 35 H 0.125 0.875 36 H 0.142 0.858 37 H 0.169 0.831 38 H 0.157 0.843 39 H 0.402 0.598 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.424 11.505 20.435 26.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.346 5.346 14 C 0.313 3.687 15 O -0.429 6.429 16 C -0.191 4.191 17 C -0.076 4.076 18 C -0.111 4.111 19 C -0.023 4.023 20 N -0.190 5.190 21 C -0.028 4.028 22 C -0.196 4.196 23 C 0.351 3.649 24 O -0.406 6.406 25 N -0.384 5.384 26 C -0.056 4.056 27 C -0.027 4.027 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.222 0.778 35 H 0.143 0.857 36 H 0.160 0.840 37 H 0.186 0.814 38 H 0.174 0.826 39 H 0.237 0.763 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.938 11.387 19.601 26.100 hybrid contribution 1.050 -0.038 0.010 1.051 sum -11.888 11.349 19.610 25.587 Atomic orbital electron populations 1.21844 0.98320 0.98067 1.01253 1.21933 0.92639 0.99721 1.02328 1.18826 0.94287 0.89246 0.80961 0.93176 1.21266 0.90674 1.38999 1.06324 0.91992 1.24896 0.98636 0.94805 0.95397 1.69906 1.35049 1.37628 1.09313 0.86399 0.84843 0.77767 0.78119 1.19742 1.20880 1.20898 1.46449 1.14369 1.55143 1.18597 1.18138 0.83149 0.79898 0.87529 1.90795 1.51494 1.60276 1.40359 1.23342 0.97336 0.99910 0.98553 1.22091 0.96903 0.94027 0.94587 1.20096 0.94809 1.00228 0.95983 1.23420 0.99255 0.92515 0.87102 1.67655 1.17954 1.09034 1.24322 1.22971 0.88389 0.93899 0.97510 1.20845 0.96273 1.05441 0.97010 1.18077 0.86402 0.78030 0.82381 1.90812 1.49510 1.58695 1.41547 1.45685 1.18729 1.58456 1.15526 1.21590 0.84161 0.97969 1.01922 1.21986 0.94928 0.89507 0.96279 0.93128 0.94270 0.95846 0.95008 0.88252 0.92596 0.77813 0.85739 0.84037 0.81447 0.82559 0.76325 0.91895 0.91888 0.90327 0.82889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.06 5.45 -26.74 -0.15 -3.20 16 3 C 0.27 6.62 2.24 -69.08 -0.15 6.47 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -13.85 8.73 -34.44 -0.30 -14.15 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.46 11.30 55.43 0.63 -23.84 16 9 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.70 -13.93 5.02 -56.33 -0.28 -14.21 16 14 C 0.53 9.96 6.31 -12.96 -0.08 9.88 16 15 O -0.55 -12.38 13.37 5.19 0.07 -12.31 16 16 C -0.17 -2.32 9.42 -37.50 -0.35 -2.67 16 17 C -0.06 -0.70 9.48 -37.15 -0.35 -1.05 16 18 C -0.11 -1.17 5.88 -104.96 -0.62 -1.79 16 19 C 0.13 1.32 10.58 -16.98 -0.18 1.14 16 20 N -0.48 -4.73 10.33 -12.51 -0.13 -4.86 16 21 C 0.13 1.03 10.71 -17.05 -0.18 0.85 16 22 C -0.19 -1.78 5.88 -104.88 -0.62 -2.39 16 23 C 0.56 5.49 7.78 -12.32 -0.10 5.39 16 24 O -0.53 -7.17 16.41 5.33 0.09 -7.08 16 25 N -0.73 -4.30 5.67 -68.04 -0.39 -4.68 16 26 C 0.09 0.41 10.70 59.85 0.64 1.05 16 27 C 0.00 -0.01 9.48 -38.37 -0.36 -0.37 16 28 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 29 H 0.04 0.84 5.64 -51.93 -0.29 0.54 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 33 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.39 6.61 8.52 -40.82 -0.35 6.27 16 35 H 0.12 1.26 6.09 -52.49 -0.32 0.94 16 36 H 0.14 1.92 7.52 -52.48 -0.39 1.53 16 37 H 0.17 1.34 6.17 -52.49 -0.32 1.02 16 38 H 0.16 0.63 6.40 -52.48 -0.34 0.29 16 39 H 0.40 1.12 6.88 -40.82 -0.28 0.84 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 42 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 43 H 0.15 1.61 7.73 -52.49 -0.41 1.20 16 LS Contribution 362.47 15.07 5.46 5.46 Total: -1.00 -33.66 362.47 -7.62 -41.28 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.47 Total: 6.81 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.58 Total: -1.93 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: -0.17 Total: -47.59 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: 0.16 Total: -19.39 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.66 -7.62 -41.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492578656.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.684 kcal (2) G-P(sol) polarization free energy of solvation -33.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds