Wall clock time and date at job start Tue Mar 31 2020 11:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5 12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21694 * 120.00256 * 359.97438 * 14 13 3 16 16 C 1.46430 * 119.99690 * 179.97438 * 14 13 3 17 17 C 1.34800 * 119.99768 * 179.97438 * 16 14 13 18 18 C 1.47228 * 119.99996 * 180.02562 * 17 16 14 19 19 C 1.39931 * 120.51879 * 359.97438 * 18 17 16 20 20 N 1.31697 * 120.84143 * 180.02562 * 19 18 17 21 21 C 1.31770 * 122.06886 * 359.97438 * 20 19 18 22 22 C 1.39656 * 120.94758 * 359.97438 * 21 20 19 23 23 C 1.47854 * 120.48077 * 180.02562 * 22 21 20 24 24 O 1.21545 * 120.00220 * 180.02562 * 23 22 21 25 25 N 1.34781 * 120.00060 * 0.02562 * 23 22 21 26 26 C 1.46501 * 120.00166 * 179.97438 * 25 23 22 27 27 C 1.39721 * 119.04177 * 359.75089 * 22 21 20 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 34 34 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 35 35 H 1.07995 * 120.00267 * 0.02562 * 16 14 13 36 36 H 1.08003 * 119.99966 * 0.02562 * 17 16 14 37 37 H 1.08000 * 119.58059 * 359.97438 * 19 18 17 38 38 H 1.08003 * 119.52820 * 180.02562 * 21 20 19 39 39 H 0.97000 * 119.99907 * 0.02562 * 25 23 22 40 40 H 1.08993 * 109.47668 * 300.00470 * 26 25 23 41 41 H 1.09007 * 109.46658 * 60.00871 * 26 25 23 42 42 H 1.08999 * 109.47134 * 180.02562 * 26 25 23 43 43 H 1.08000 * 120.92955 * 180.27027 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5453 -0.1938 11 1 6.4963 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6093 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3419 2.6326 0.4310 16 6 0.0477 3.3185 2.6184 17 6 -1.1696 3.8860 2.7334 18 6 -1.5591 4.5442 3.9915 19 6 -0.6744 4.5866 5.0748 20 7 -1.0163 5.1733 6.2032 21 6 -2.1932 5.7430 6.3669 22 6 -3.1376 5.7487 5.3381 23 6 -4.4548 6.3915 5.5329 24 8 -5.2705 6.3910 4.6317 25 7 -4.7511 6.9780 6.7096 26 6 -6.0560 7.6154 6.9024 27 6 -2.8176 5.1434 4.1202 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8292 -0.0604 -2.9503 34 1 2.2720 2.1231 1.9978 35 1 0.7374 3.3470 3.4489 36 1 -1.8592 3.8578 1.9027 37 1 0.3010 4.1317 4.9847 38 1 -2.4305 6.2129 7.3099 39 1 -4.1001 6.9787 7.4287 40 1 -6.1821 8.4137 6.1713 41 1 -6.8450 6.8747 6.7714 42 1 -6.1118 8.0320 7.9081 43 1 -3.5233 5.1339 3.3027 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492578656.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:39 Heat of formation + Delta-G solvation = -50.393152 kcal Electronic energy + Delta-G solvation = -24881.929521 eV Core-core repulsion = 21119.284247 eV Total energy + Delta-G solvation = -3762.645275 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.74660 -40.68478 -40.08657 -37.06748 -35.95551 -35.41308 -34.27984 -33.59586 -32.84082 -31.12643 -28.98037 -28.04817 -26.13679 -25.07484 -24.53371 -23.34086 -21.97502 -21.27210 -20.66965 -19.19428 -18.95101 -18.04093 -17.69484 -17.42653 -17.02031 -16.43908 -16.43183 -16.19259 -15.89975 -15.66611 -15.01882 -14.94715 -14.77861 -14.54533 -14.23921 -13.91414 -13.86480 -13.55841 -13.44722 -13.16210 -13.14338 -12.95327 -12.81451 -12.69991 -12.14116 -12.04821 -11.91883 -11.57612 -11.54060 -11.02912 -10.85863 -10.77229 -10.58469 -10.51458 -10.21657 -9.72811 -9.43827 -8.15039 -6.32141 -0.75605 -0.31255 0.84449 1.44960 1.46369 1.57960 1.73050 2.06321 2.36999 2.46581 2.67289 2.81120 3.14649 3.17674 3.48010 3.65487 3.70893 3.73858 3.92603 4.13453 4.32125 4.41337 4.50310 4.55339 4.58357 4.62945 4.77254 4.80042 4.82606 4.97193 5.07179 5.21034 5.25397 5.31120 5.33679 5.42094 5.45203 5.58068 5.64446 5.81570 5.96045 6.18428 6.39046 6.69632 6.76680 7.02402 7.07011 7.35199 7.60950 8.90576 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029684 B = 0.002107 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.034248 B =13283.068608 C =13844.928009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.276 3.724 4 H -0.003 1.003 5 C -0.546 4.546 6 H 0.074 0.926 7 C 0.013 3.987 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.286 1.286 13 N -0.697 5.697 14 C 0.523 3.477 15 O -0.594 6.594 16 C -0.183 4.183 17 C -0.030 4.030 18 C -0.123 4.123 19 C 0.143 3.857 20 N -0.494 5.494 21 C 0.151 3.849 22 C -0.197 4.197 23 C 0.561 3.439 24 O -0.578 6.578 25 N -0.713 5.713 26 C 0.082 3.918 27 C -0.008 4.008 28 H 0.024 0.976 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.264 0.736 34 H 0.406 0.594 35 H 0.166 0.834 36 H 0.123 0.877 37 H 0.189 0.811 38 H 0.200 0.800 39 H 0.420 0.580 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.118 0.882 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.526 12.564 24.373 29.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.172 3.828 4 H 0.015 0.985 5 C -0.584 4.584 6 H 0.092 0.908 7 C -0.187 4.187 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.183 1.183 11 H -0.205 1.205 12 H -0.212 1.212 13 N -0.345 5.345 14 C 0.313 3.687 15 O -0.478 6.478 16 C -0.203 4.203 17 C -0.051 4.051 18 C -0.125 4.125 19 C -0.014 4.014 20 N -0.202 5.202 21 C -0.007 4.007 22 C -0.203 4.203 23 C 0.348 3.652 24 O -0.459 6.459 25 N -0.365 5.365 26 C -0.061 4.061 27 C -0.034 4.034 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.242 0.758 35 H 0.184 0.816 36 H 0.141 0.859 37 H 0.206 0.794 38 H 0.216 0.784 39 H 0.258 0.742 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.136 0.864 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.020 12.472 23.634 29.302 hybrid contribution 0.607 -0.249 -1.115 1.294 sum -11.414 12.223 22.518 28.049 Atomic orbital electron populations 1.21682 0.97064 0.99079 1.00264 1.21783 0.93674 0.99181 1.01357 1.18383 0.93703 0.89196 0.81468 0.98461 1.21624 0.91394 1.38702 1.06672 0.90798 1.25790 1.03309 0.94469 0.95100 1.70063 1.36982 1.38505 1.09881 0.85319 0.79174 0.77762 0.78196 1.18272 1.20540 1.21219 1.46169 1.15391 1.55337 1.17596 1.18909 0.82050 0.78999 0.88789 1.90775 1.52615 1.61876 1.42555 1.23089 0.98710 1.01299 0.97223 1.22070 0.95965 0.92248 0.94841 1.19881 0.95388 1.01670 0.95604 1.23738 0.99608 0.91495 0.86518 1.67800 1.18627 1.09677 1.24076 1.23600 0.87031 0.91831 0.98282 1.20885 0.96682 1.05687 0.96997 1.18211 0.86059 0.78054 0.82891 1.90794 1.50858 1.60826 1.43373 1.45611 1.19523 1.56687 1.14649 1.21764 0.83131 0.97319 1.03908 1.22046 0.94854 0.89659 0.96879 0.95693 0.93647 0.93670 0.93874 0.91080 0.92670 0.75835 0.81645 0.85892 0.79426 0.78387 0.74227 0.92956 0.92929 0.86392 0.83937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.51 71.98 0.61 -5.00 16 2 C -0.12 -5.95 5.45 30.59 0.17 -5.79 16 3 C 0.28 14.04 2.24 44.24 0.10 14.14 16 4 H 0.00 -0.15 7.58 -2.39 -0.02 -0.17 16 5 C -0.55 -28.50 8.73 25.60 0.22 -28.28 16 6 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 7 C 0.01 0.71 5.29 84.65 0.45 1.16 16 8 N -0.92 -52.40 11.30 21.45 0.24 -52.16 16 9 Si 0.97 41.81 29.54 68.60 2.03 43.84 16 10 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 11 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 13 N -0.70 -27.88 5.02 -450.34 -2.26 -30.14 16 14 C 0.52 20.06 6.31 86.38 0.54 20.60 16 15 O -0.59 -28.08 13.37 -4.33 -0.06 -28.14 16 16 C -0.18 -4.76 9.42 23.62 0.22 -4.53 16 17 C -0.03 -0.75 9.48 23.84 0.23 -0.53 16 18 C -0.12 -2.47 5.88 -20.08 -0.12 -2.59 16 19 C 0.14 2.39 10.58 85.12 0.90 3.29 16 20 N -0.49 -7.90 10.33 -193.48 -2.00 -9.90 16 21 C 0.15 1.83 10.71 85.04 0.91 2.74 16 22 C -0.20 -3.32 5.88 -20.03 -0.12 -3.44 16 23 C 0.56 10.20 7.78 86.79 0.68 10.87 16 24 O -0.58 -15.87 16.41 -3.86 -0.06 -15.93 16 25 N -0.71 -6.48 5.67 -487.46 -2.76 -9.24 16 26 C 0.08 0.59 10.70 127.77 1.37 1.96 16 27 C -0.01 -0.17 9.48 23.05 0.22 0.05 16 28 H 0.02 1.22 7.84 -2.39 -0.02 1.20 16 29 H 0.04 1.97 5.64 -2.39 -0.01 1.96 16 30 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.07 3.93 5.95 -2.39 -0.01 3.91 16 33 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 34 H 0.41 13.31 8.52 -92.71 -0.79 12.52 16 35 H 0.17 2.83 6.09 -2.91 -0.02 2.82 16 36 H 0.12 3.50 7.52 -2.91 -0.02 3.48 16 37 H 0.19 2.26 6.17 -2.91 -0.02 2.24 16 38 H 0.20 0.57 6.40 -2.91 -0.02 0.55 16 39 H 0.42 0.62 6.88 -92.71 -0.64 -0.02 16 40 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 42 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 43 H 0.14 3.16 7.73 -2.91 -0.02 3.14 16 Total: -1.00 -77.34 362.47 1.15 -76.20 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -0.36 Total: 20.81 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 6.38 Total: 4.66 kcal Atomic # 7 Polarization: -94.66 SS G_CDS: -6.78 Total: -101.44 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -0.12 Total: -44.07 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -77.34 1.15 -76.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492578656.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.802 kcal (2) G-P(sol) polarization free energy of solvation -77.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds