Wall clock time and date at job start Tue Mar 31 2020 11:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47466 * 2 1 4 4 H 1.09001 * 109.46779 * 54.99964 * 3 2 1 5 5 C 1.50699 * 109.47435 * 175.00177 * 3 2 1 6 6 O 1.21273 * 120.00080 * 119.99882 * 5 3 2 7 7 N 1.34778 * 119.99733 * 300.00102 * 5 3 2 8 8 C 1.39472 * 119.99793 * 175.11689 * 7 5 3 9 9 C 1.38601 * 119.57969 * 184.96704 * 8 7 5 10 10 C 1.40808 * 118.79768 * 179.75996 * 9 8 7 11 11 C 1.41542 * 120.99778 * 180.26075 * 10 9 8 12 12 H 1.08004 * 119.99317 * 203.97134 * 11 10 9 13 13 C 1.40028 * 119.99947 * 23.96772 * 11 10 9 14 14 N 1.30740 * 120.00272 * 16.58874 * 13 11 10 15 15 Si 1.86801 * 119.99943 * 196.57995 * 13 11 10 16 16 H 1.48500 * 109.46789 * 90.00010 * 15 13 11 17 17 H 1.48493 * 109.47474 * 210.00355 * 15 13 11 18 18 H 1.48505 * 109.46962 * 330.00557 * 15 13 11 19 19 C 1.41175 * 118.00238 * 0.49950 * 10 9 8 20 20 C 1.37593 * 119.01954 * 359.76087 * 19 10 9 21 21 N 1.32082 * 121.10615 * 359.97085 * 20 19 10 22 22 N 1.46498 * 109.46947 * 295.00472 * 3 2 1 23 23 C 1.46768 * 124.35081 * 119.99859 * 22 3 2 24 24 C 1.54485 * 105.47081 * 162.95701 * 23 22 3 25 25 C 1.54626 * 101.76549 * 25.41725 * 24 23 22 26 26 C 1.34422 * 124.34770 * 299.96735 * 22 3 2 27 27 O 1.21274 * 124.94574 * 0.39773 * 26 22 3 28 28 H 1.09000 * 109.47295 * 59.99702 * 1 2 3 29 29 H 1.09001 * 109.47334 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47075 * 300.00021 * 1 2 3 31 31 H 1.09005 * 109.47075 * 239.99979 * 2 1 3 32 32 H 1.09000 * 109.47295 * 120.00298 * 2 1 3 33 33 H 0.96997 * 120.00150 * 355.11976 * 7 5 3 34 34 H 1.08000 * 120.59594 * 0.02562 * 9 8 7 35 35 H 0.97000 * 120.00253 * 179.97438 * 14 13 11 36 36 H 1.08004 * 120.49325 * 179.77710 * 19 10 9 37 37 H 1.07996 * 119.44701 * 179.97438 * 20 19 10 38 38 H 1.09004 * 110.24431 * 43.95990 * 23 22 3 39 39 H 1.08991 * 110.24477 * 281.96037 * 23 22 3 40 40 H 1.09002 * 110.96118 * 143.53561 * 24 23 22 41 41 H 1.09000 * 110.97222 * 267.29286 * 24 23 22 42 42 H 1.08998 * 110.48363 * 93.87869 * 25 24 23 43 43 H 1.09004 * 110.48453 * 216.52077 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 8 4.2216 1.9434 -0.7477 7 7 4.1298 0.8910 1.2031 8 6 5.5200 0.8011 1.2707 9 6 6.1119 0.1389 2.3347 10 6 7.5165 0.0536 2.3838 11 6 8.1694 -0.6164 3.4460 12 1 9.1891 -0.3645 3.6975 13 6 7.4932 -1.6056 4.1706 14 7 6.4035 -2.1412 3.6859 15 14 8.1483 -2.1600 5.8298 16 1 7.5559 -1.3202 6.9016 17 1 7.7835 -3.5816 6.0561 18 1 9.6265 -2.0190 5.8506 19 6 8.2542 0.6608 1.3445 20 6 7.5777 1.3014 0.3319 21 7 6.2580 1.3544 0.3199 22 7 1.6524 2.0975 -1.2518 23 6 0.8076 3.2948 -1.3328 24 6 1.0296 3.8604 -2.7531 25 6 1.4539 2.5949 -3.5337 26 6 2.0253 1.6793 -2.4736 27 8 2.7195 0.7096 -2.6942 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.5860 0.5554 1.9328 34 1 5.5064 -0.3073 3.1098 35 1 5.9354 -2.8267 4.1877 36 1 9.3335 0.6229 1.3440 37 1 8.1351 1.7686 -0.4664 38 1 1.1149 4.0247 -0.5838 39 1 -0.2397 3.0276 -1.1926 40 1 0.1060 4.2760 -3.1561 41 1 1.8249 4.6058 -2.7563 42 1 0.5893 2.1333 -4.0108 43 1 2.2139 2.8410 -4.2753 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532434464.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:52 Heat of formation + Delta-G solvation = -29.285208 kcal Electronic energy + Delta-G solvation = -26817.734064 eV Core-core repulsion = 23056.004098 eV Total energy + Delta-G solvation = -3761.729965 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.72682 -39.21234 -37.66176 -36.22246 -34.81313 -34.29767 -33.65032 -31.02708 -30.52664 -28.91081 -27.59369 -26.84913 -25.95975 -22.45304 -22.00810 -21.96311 -21.77308 -20.02848 -18.79569 -17.68384 -17.17035 -16.74397 -16.48139 -15.59221 -15.18860 -14.92729 -14.59531 -14.24088 -14.18534 -14.07240 -13.70744 -13.62065 -13.40048 -13.07027 -12.85355 -12.73421 -12.59411 -12.54706 -12.15169 -11.85956 -11.66246 -11.43595 -11.24844 -11.20820 -11.15560 -11.00399 -10.88392 -10.26315 -10.11970 -9.69732 -9.53523 -9.39288 -9.32894 -8.60699 -7.97602 -7.65557 -6.99768 -6.78883 -4.59609 2.59338 2.71350 2.79808 2.98917 3.01914 3.05468 3.22212 3.45794 3.75400 3.85539 4.33283 4.36898 4.66748 4.68580 4.85308 4.86734 4.94701 5.04752 5.20857 5.29352 5.36963 5.43180 5.55316 5.63100 5.71068 5.72378 5.85018 5.86641 5.98816 6.03927 6.21244 6.53152 6.61788 6.69458 6.83829 6.96857 7.12107 7.23155 7.41959 7.49153 7.79564 7.95438 8.23726 8.38798 8.45812 8.72940 8.76319 8.93642 9.73678 10.07974 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021360 B = 0.003373 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.566859 B = 8299.752091 C = 9121.430810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.144 3.856 4 H 0.108 0.892 5 C 0.487 3.513 6 O -0.459 6.459 7 N -0.657 5.657 8 C 0.340 3.660 9 C -0.244 4.244 10 C 0.144 3.856 11 C -0.456 4.456 12 H 0.082 0.918 13 C 0.078 3.922 14 N -0.787 5.787 15 Si 0.912 3.088 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.261 1.261 19 C -0.285 4.285 20 C 0.119 3.881 21 N -0.553 5.553 22 N -0.606 5.606 23 C 0.106 3.894 24 C -0.130 4.130 25 C -0.153 4.153 26 C 0.524 3.476 27 O -0.510 6.510 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.405 0.595 34 H 0.127 0.873 35 H 0.282 0.718 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.129 7.337 -4.054 18.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.176 4.176 3 C 0.037 3.963 4 H 0.126 0.874 5 C 0.269 3.731 6 O -0.326 6.326 7 N -0.304 5.304 8 C 0.115 3.885 9 C -0.270 4.270 10 C 0.136 3.864 11 C -0.488 4.488 12 H 0.100 0.900 13 C -0.141 4.141 14 N -0.413 5.413 15 Si 0.736 3.264 16 H -0.192 1.192 17 H -0.202 1.202 18 H -0.185 1.185 19 C -0.309 4.309 20 C -0.035 4.035 21 N -0.272 5.272 22 N -0.341 5.341 23 C -0.017 4.017 24 C -0.168 4.168 25 C -0.194 4.194 26 C 0.311 3.689 27 O -0.384 6.384 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.240 0.760 34 H 0.145 0.855 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.140 0.860 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.117 0.883 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.902 7.417 -5.478 18.382 hybrid contribution 0.429 -0.961 1.952 2.218 sum -15.472 6.456 -3.526 17.132 Atomic orbital electron populations 1.21701 0.94881 1.01892 1.01572 1.21901 0.96654 0.94396 1.04684 1.20887 0.92880 0.95397 0.87121 0.87377 1.20775 0.89743 0.79827 0.82763 1.90786 1.63945 1.40026 1.37882 1.43372 1.05542 1.60578 1.20933 1.18170 0.82502 0.95140 0.92666 1.21526 0.96108 1.08750 1.00591 1.17554 0.90904 0.87643 0.90334 1.19577 1.00142 1.16618 1.12415 0.89994 1.25954 0.94208 0.94952 0.98971 1.69787 1.15408 1.19875 1.36207 0.86254 0.80499 0.78099 0.81554 1.19197 1.20236 1.18510 1.21888 0.99111 1.11227 0.98669 1.21753 0.89349 0.96111 0.96285 1.67218 1.06634 1.25746 1.27586 1.47884 1.51362 1.29555 1.05327 1.22061 0.94434 0.86776 0.98437 1.22568 1.02882 0.97290 0.94058 1.22298 1.02878 0.96023 0.98178 1.20701 0.79156 0.85055 0.83955 1.90748 1.36153 1.28103 1.83385 0.92806 0.92352 0.92680 0.89644 0.90107 0.75994 0.85488 0.90747 0.88034 0.86013 0.90569 0.91146 0.89399 0.89886 0.88253 0.88173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.80 37.16 0.36 -1.01 16 2 C -0.14 -1.79 5.31 -26.73 -0.14 -1.94 16 3 C 0.14 2.01 2.67 -69.08 -0.18 1.83 16 4 H 0.11 1.13 8.07 -51.93 -0.42 0.71 16 5 C 0.49 9.64 6.81 -10.99 -0.07 9.57 16 6 O -0.46 -11.19 13.14 -9.13 -0.12 -11.31 16 7 N -0.66 -13.29 5.20 -11.49 -0.06 -13.35 16 8 C 0.34 8.52 7.42 -154.70 -1.15 7.37 16 9 C -0.24 -6.31 8.62 -38.48 -0.33 -6.64 16 10 C 0.14 3.86 5.60 -106.55 -0.60 3.27 16 11 C -0.46 -11.89 9.12 -37.65 -0.34 -12.23 16 12 H 0.08 2.05 7.90 -52.48 -0.41 1.63 16 13 C 0.08 1.90 5.20 -17.35 -0.09 1.81 16 14 N -0.79 -19.58 10.92 55.55 0.61 -18.98 16 15 Si 0.91 18.02 29.59 -169.99 -5.03 12.99 16 16 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 17 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 18 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 19 C -0.29 -7.23 9.90 -38.70 -0.38 -7.61 16 20 C 0.12 3.00 11.15 -17.68 -0.20 2.80 16 21 N -0.55 -14.76 7.85 -12.52 -0.10 -14.86 16 22 N -0.61 -8.00 2.08 -166.16 -0.35 -8.35 16 23 C 0.11 0.90 7.30 -3.12 -0.02 0.88 16 24 C -0.13 -0.99 7.18 -25.10 -0.18 -1.17 16 25 C -0.15 -1.59 6.86 -26.74 -0.18 -1.77 16 26 C 0.52 8.24 6.68 -10.86 -0.07 8.17 16 27 O -0.51 -10.73 15.35 -9.14 -0.14 -10.87 16 28 H 0.05 0.51 7.75 -51.93 -0.40 0.11 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 1.41 6.63 -51.93 -0.34 1.07 16 32 H 0.08 1.00 7.54 -51.93 -0.39 0.60 16 33 H 0.41 6.62 8.22 -40.82 -0.34 6.29 16 34 H 0.13 3.22 6.20 -52.49 -0.33 2.90 16 35 H 0.28 6.32 8.29 -40.82 -0.34 5.98 16 36 H 0.10 2.36 8.06 -52.48 -0.42 1.94 16 37 H 0.12 2.71 8.06 -52.49 -0.42 2.28 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 356.92 15.07 5.38 5.38 Total: -1.00 -36.02 356.92 -9.39 -45.41 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -5.99 Total: 10.60 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -3.59 Total: 3.32 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.10 Total: -55.53 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.26 Total: -22.18 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.02 -9.39 -45.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532434464.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.126 kcal (2) G-P(sol) polarization free energy of solvation -36.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds