Wall clock time and date at job start Tue Mar 31 2020 11:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47466 * 2 1 4 4 H 1.09001 * 109.46779 * 54.99964 * 3 2 1 5 5 C 1.50699 * 109.47435 * 175.00177 * 3 2 1 6 6 O 1.21273 * 120.00080 * 119.99882 * 5 3 2 7 7 N 1.34778 * 119.99733 * 300.00102 * 5 3 2 8 8 C 1.39472 * 119.99793 * 175.11689 * 7 5 3 9 9 C 1.38601 * 119.57969 * 184.96704 * 8 7 5 10 10 C 1.40808 * 118.79768 * 179.75996 * 9 8 7 11 11 C 1.41542 * 120.99778 * 180.26075 * 10 9 8 12 12 H 1.08004 * 119.99317 * 203.97134 * 11 10 9 13 13 C 1.40028 * 119.99947 * 23.96772 * 11 10 9 14 14 N 1.30740 * 120.00272 * 16.58874 * 13 11 10 15 15 Si 1.86801 * 119.99943 * 196.57995 * 13 11 10 16 16 H 1.48500 * 109.46789 * 90.00010 * 15 13 11 17 17 H 1.48493 * 109.47474 * 210.00355 * 15 13 11 18 18 H 1.48505 * 109.46962 * 330.00557 * 15 13 11 19 19 C 1.41175 * 118.00238 * 0.49950 * 10 9 8 20 20 C 1.37593 * 119.01954 * 359.76087 * 19 10 9 21 21 N 1.32082 * 121.10615 * 359.97085 * 20 19 10 22 22 N 1.46498 * 109.46947 * 295.00472 * 3 2 1 23 23 C 1.46768 * 124.35081 * 119.99859 * 22 3 2 24 24 C 1.54485 * 105.47081 * 162.95701 * 23 22 3 25 25 C 1.54626 * 101.76549 * 25.41725 * 24 23 22 26 26 C 1.34422 * 124.34770 * 299.96735 * 22 3 2 27 27 O 1.21274 * 124.94574 * 0.39773 * 26 22 3 28 28 H 1.09000 * 109.47295 * 59.99702 * 1 2 3 29 29 H 1.09001 * 109.47334 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47075 * 300.00021 * 1 2 3 31 31 H 1.09005 * 109.47075 * 239.99979 * 2 1 3 32 32 H 1.09000 * 109.47295 * 120.00298 * 2 1 3 33 33 H 0.96997 * 120.00150 * 355.11976 * 7 5 3 34 34 H 1.08000 * 120.59594 * 0.02562 * 9 8 7 35 35 H 0.97000 * 120.00253 * 179.97438 * 14 13 11 36 36 H 1.08004 * 120.49325 * 179.77710 * 19 10 9 37 37 H 1.07996 * 119.44701 * 179.97438 * 20 19 10 38 38 H 1.09004 * 110.24431 * 43.95990 * 23 22 3 39 39 H 1.08991 * 110.24477 * 281.96037 * 23 22 3 40 40 H 1.09002 * 110.96118 * 143.53561 * 24 23 22 41 41 H 1.09000 * 110.97222 * 267.29286 * 24 23 22 42 42 H 1.08998 * 110.48363 * 93.87869 * 25 24 23 43 43 H 1.09004 * 110.48453 * 216.52077 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 8 4.2216 1.9434 -0.7477 7 7 4.1298 0.8910 1.2031 8 6 5.5200 0.8011 1.2707 9 6 6.1119 0.1389 2.3347 10 6 7.5165 0.0536 2.3838 11 6 8.1694 -0.6164 3.4460 12 1 9.1891 -0.3645 3.6975 13 6 7.4932 -1.6056 4.1706 14 7 6.4035 -2.1412 3.6859 15 14 8.1483 -2.1600 5.8298 16 1 7.5559 -1.3202 6.9016 17 1 7.7835 -3.5816 6.0561 18 1 9.6265 -2.0190 5.8506 19 6 8.2542 0.6608 1.3445 20 6 7.5777 1.3014 0.3319 21 7 6.2580 1.3544 0.3199 22 7 1.6524 2.0975 -1.2518 23 6 0.8076 3.2948 -1.3328 24 6 1.0296 3.8604 -2.7531 25 6 1.4539 2.5949 -3.5337 26 6 2.0253 1.6793 -2.4736 27 8 2.7195 0.7096 -2.6942 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.5860 0.5554 1.9328 34 1 5.5064 -0.3073 3.1098 35 1 5.9354 -2.8267 4.1877 36 1 9.3335 0.6229 1.3440 37 1 8.1351 1.7686 -0.4664 38 1 1.1149 4.0247 -0.5838 39 1 -0.2397 3.0276 -1.1926 40 1 0.1060 4.2760 -3.1561 41 1 1.8249 4.6058 -2.7563 42 1 0.5893 2.1333 -4.0108 43 1 2.2139 2.8410 -4.2753 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532434464.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:52 Heat of formation + Delta-G solvation = -52.195349 kcal Electronic energy + Delta-G solvation = -26818.727522 eV Core-core repulsion = 23056.004098 eV Total energy + Delta-G solvation = -3762.723424 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.94226 -40.81368 -39.40366 -37.40422 -36.15145 -35.93925 -35.37944 -32.49512 -31.90727 -30.67196 -28.43602 -28.09681 -27.87078 -23.96340 -23.70133 -23.17923 -22.69968 -21.68866 -20.09787 -19.50145 -18.60940 -17.85564 -17.57754 -17.22281 -16.91128 -16.26790 -16.09789 -16.00068 -15.61611 -15.33830 -15.23332 -14.74084 -14.58660 -14.39603 -14.34842 -14.24536 -13.84385 -13.55197 -13.29929 -13.20293 -12.97411 -12.92631 -12.67943 -12.41797 -12.15724 -12.09132 -11.99379 -11.92086 -11.81647 -11.50002 -11.16846 -11.03176 -10.64621 -9.98744 -9.82560 -9.48652 -8.89514 -8.66464 -6.59124 0.71556 0.97409 1.40334 1.52949 1.53891 1.54755 1.82590 1.97516 2.19226 2.30293 2.78573 3.39971 3.60041 3.66962 3.71632 3.82717 3.93980 4.10223 4.14470 4.22709 4.35602 4.47012 4.67991 4.69681 4.71946 4.79250 4.82310 4.89029 4.89234 5.03254 5.05521 5.09722 5.13591 5.19788 5.25921 5.33989 5.44801 5.57225 5.61180 5.87650 6.11729 6.21362 6.44334 6.56751 6.76774 6.80375 7.22477 7.33902 7.82084 8.24783 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021360 B = 0.003373 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.566859 B = 8299.752091 C = 9121.430810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.133 4.133 3 C 0.152 3.848 4 H 0.155 0.845 5 C 0.478 3.522 6 O -0.510 6.510 7 N -0.650 5.650 8 C 0.334 3.666 9 C -0.260 4.260 10 C 0.115 3.885 11 C -0.484 4.484 12 H 0.084 0.916 13 C 0.040 3.960 14 N -0.811 5.811 15 Si 0.991 3.009 16 H -0.258 1.258 17 H -0.267 1.267 18 H -0.260 1.260 19 C -0.299 4.299 20 C 0.111 3.889 21 N -0.582 5.582 22 N -0.606 5.606 23 C 0.098 3.902 24 C -0.119 4.119 25 C -0.149 4.149 26 C 0.503 3.497 27 O -0.581 6.581 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.422 0.578 34 H 0.127 0.873 35 H 0.293 0.707 36 H 0.115 0.885 37 H 0.144 0.856 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.130 0.870 41 H 0.073 0.927 42 H 0.126 0.874 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.852 8.099 -2.452 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.172 4.172 3 C 0.045 3.955 4 H 0.172 0.828 5 C 0.263 3.737 6 O -0.381 6.381 7 N -0.299 5.299 8 C 0.108 3.892 9 C -0.286 4.286 10 C 0.107 3.893 11 C -0.514 4.514 12 H 0.102 0.898 13 C -0.178 4.178 14 N -0.436 5.436 15 Si 0.811 3.189 16 H -0.182 1.182 17 H -0.191 1.191 18 H -0.183 1.183 19 C -0.323 4.323 20 C -0.043 4.043 21 N -0.302 5.302 22 N -0.339 5.339 23 C -0.023 4.023 24 C -0.156 4.156 25 C -0.189 4.189 26 C 0.293 3.707 27 O -0.460 6.460 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.260 0.740 34 H 0.145 0.855 35 H 0.104 0.896 36 H 0.133 0.867 37 H 0.161 0.839 38 H 0.105 0.895 39 H 0.126 0.874 40 H 0.148 0.852 41 H 0.091 0.909 42 H 0.144 0.856 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.699 8.221 -3.860 20.788 hybrid contribution 1.271 -1.218 1.422 2.263 sum -17.428 7.002 -2.438 18.940 Atomic orbital electron populations 1.21646 0.91502 1.02727 1.03114 1.21859 0.99415 0.93224 1.02705 1.20971 0.88258 0.96977 0.89313 0.82760 1.21986 0.92340 0.77997 0.81339 1.90753 1.65843 1.42178 1.39332 1.43422 1.03956 1.60434 1.22042 1.18470 0.84506 0.94218 0.91960 1.21526 0.96046 1.09802 1.01181 1.17998 0.91803 0.88365 0.91178 1.19875 1.00713 1.17616 1.13246 0.89777 1.26861 0.94229 0.94277 1.02419 1.69817 1.16135 1.19951 1.37706 0.85074 0.79716 0.78011 0.76136 1.18205 1.19115 1.18328 1.22064 0.99849 1.11706 0.98719 1.22162 0.89403 0.95911 0.96823 1.67335 1.07371 1.27000 1.28525 1.48143 1.50962 1.30527 1.04273 1.22495 0.95463 0.85115 0.99253 1.22633 1.04455 0.95488 0.93065 1.22350 1.03283 0.96406 0.96816 1.21745 0.78299 0.84726 0.85964 1.90701 1.39371 1.31236 1.84680 0.92474 0.91997 0.89749 0.94003 0.89832 0.74025 0.85540 0.89566 0.86662 0.83851 0.89519 0.87369 0.85215 0.90864 0.85568 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 9.80 71.98 0.71 -1.46 16 2 C -0.13 -3.39 5.31 30.59 0.16 -3.23 16 3 C 0.15 4.05 2.67 44.24 0.12 4.17 16 4 H 0.16 2.67 8.07 -2.39 -0.02 2.65 16 5 C 0.48 19.35 6.81 87.66 0.60 19.94 16 6 O -0.51 -25.94 13.14 11.05 0.15 -25.80 16 7 N -0.65 -26.91 5.20 -308.66 -1.61 -28.52 16 8 C 0.33 17.38 7.42 132.75 0.98 18.36 16 9 C -0.26 -13.89 8.62 22.99 0.20 -13.69 16 10 C 0.11 6.36 5.60 -21.11 -0.12 6.24 16 11 C -0.48 -25.63 9.12 23.52 0.21 -25.41 16 12 H 0.08 4.26 7.90 -2.91 -0.02 4.24 16 13 C 0.04 1.91 5.20 85.29 0.44 2.36 16 14 N -0.81 -40.37 10.92 21.84 0.24 -40.13 16 15 Si 0.99 36.15 29.59 68.60 2.03 38.18 16 16 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 17 H -0.27 -9.23 7.11 99.48 0.71 -8.52 16 18 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 19 C -0.30 -15.72 9.90 22.84 0.23 -15.49 16 20 C 0.11 5.77 11.15 84.50 0.94 6.71 16 21 N -0.58 -32.38 7.85 -193.53 -1.52 -33.90 16 22 N -0.61 -15.13 2.08 -798.20 -1.66 -16.79 16 23 C 0.10 1.29 7.30 86.83 0.63 1.92 16 24 C -0.12 -1.41 7.18 31.65 0.23 -1.18 16 25 C -0.15 -2.89 6.86 30.59 0.21 -2.68 16 26 C 0.50 16.03 6.68 87.90 0.59 16.62 16 27 O -0.58 -26.03 15.35 11.04 0.17 -25.86 16 28 H 0.06 0.91 7.75 -2.39 -0.02 0.89 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.04 1.45 6.63 -2.38 -0.02 1.43 16 32 H 0.08 2.02 7.54 -2.39 -0.02 2.00 16 33 H 0.42 13.86 8.22 -92.71 -0.76 13.10 16 34 H 0.13 6.61 6.20 -2.91 -0.02 6.59 16 35 H 0.29 12.97 8.29 -92.71 -0.77 12.20 16 36 H 0.12 5.52 8.06 -2.91 -0.02 5.50 16 37 H 0.14 6.58 8.06 -2.91 -0.02 6.56 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -85.42 356.92 4.21 -81.21 By element: Atomic # 1 Polarization: 38.13 SS G_CDS: 0.28 Total: 38.41 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 6.13 Total: 13.18 kcal Atomic # 7 Polarization: -114.79 SS G_CDS: -4.55 Total: -119.33 kcal Atomic # 8 Polarization: -51.97 SS G_CDS: 0.31 Total: -51.65 kcal Atomic # 14 Polarization: 36.15 SS G_CDS: 2.03 Total: 38.18 kcal Total: -85.42 4.21 -81.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532434464.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.019 kcal (2) G-P(sol) polarization free energy of solvation -85.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds