Wall clock time and date at job start Tue Mar 31 2020 12:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47333 * 2 1 4 4 O 1.21279 * 119.99909 * 359.97438 * 3 2 1 5 5 N 1.34772 * 120.00025 * 180.02562 * 3 2 1 6 6 C 1.47018 * 125.64994 * 359.95602 * 5 3 2 7 7 C 1.54324 * 107.27046 * 181.09313 * 6 5 3 8 8 C 1.55157 * 102.94424 * 22.19726 * 7 6 5 9 9 H 1.09000 * 111.03609 * 82.58160 * 8 7 6 10 10 C 1.50694 * 111.00655 * 206.42258 * 8 7 6 11 11 O 1.21278 * 120.00263 * 112.19312 * 10 8 7 12 12 N 1.34782 * 119.99684 * 292.19190 * 10 8 7 13 13 C 1.39474 * 119.99939 * 185.28030 * 12 10 8 14 14 C 1.38596 * 119.57997 * 185.43988 * 13 12 10 15 15 C 1.40815 * 118.79329 * 180.24499 * 14 13 12 16 16 C 1.41543 * 120.99456 * 179.72848 * 15 14 13 17 17 H 1.07996 * 120.00303 * 336.42741 * 16 15 14 18 18 C 1.40034 * 119.99767 * 156.42455 * 16 15 14 19 19 N 1.30745 * 119.99916 * 331.68597 * 18 16 15 20 20 Si 1.86798 * 119.99933 * 151.69022 * 18 16 15 21 21 H 1.48504 * 109.47085 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.46993 * 299.99829 * 20 18 16 23 23 H 1.48498 * 109.47262 * 59.99641 * 20 18 16 24 24 C 1.41175 * 118.00497 * 359.46464 * 15 14 13 25 25 C 1.37586 * 119.01965 * 0.26588 * 24 15 14 26 26 N 1.32082 * 121.10643 * 0.02562 * 25 24 15 27 27 C 1.47428 * 125.64736 * 180.02562 * 5 3 2 28 28 H 1.09002 * 109.47230 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46857 * 300.00010 * 1 2 3 30 30 H 1.09000 * 109.46948 * 59.99946 * 1 2 3 31 31 H 1.09009 * 109.46856 * 240.00016 * 2 1 3 32 32 H 1.08999 * 109.47662 * 120.00260 * 2 1 3 33 33 H 1.09001 * 109.88454 * 300.51209 * 6 5 3 34 34 H 1.09004 * 109.88408 * 61.68467 * 6 5 3 35 35 H 1.09002 * 110.72832 * 263.82968 * 7 6 5 36 36 H 1.09003 * 110.72016 * 140.55667 * 7 6 5 37 37 H 0.96995 * 120.00414 * 5.28378 * 12 10 8 38 38 H 1.07997 * 120.60560 * 0.02562 * 14 13 12 39 39 H 0.97004 * 120.00173 * 354.07912 * 19 18 16 40 40 H 1.08002 * 120.48851 * 180.29433 * 24 15 14 41 41 H 1.07999 * 119.44636 * 180.02562 * 25 24 15 42 42 H 1.09000 * 110.36754 * 36.99405 * 27 5 3 43 43 H 1.09005 * 110.36370 * 274.67218 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3574 1.6670 -0.0005 6 6 4.4181 0.6490 -0.0002 7 6 5.7689 1.3948 0.0271 8 6 5.3889 2.7809 0.6118 9 1 5.3399 2.7463 1.7001 10 6 6.3522 3.8441 0.1508 11 8 5.9767 4.7170 -0.6028 12 7 7.6310 3.8250 0.5761 13 6 8.4936 4.8680 0.2393 14 6 9.8336 4.7859 0.5838 15 6 10.6886 5.8507 0.2402 16 6 12.0637 5.8181 0.5742 17 1 12.4060 5.2037 1.3937 18 6 12.9803 6.5827 -0.1580 19 7 12.7391 6.8695 -1.4106 20 14 14.5476 7.1928 0.6548 21 1 15.3427 7.9737 -0.3268 22 1 14.2012 8.0582 1.8108 23 1 15.3447 6.0321 1.1267 24 6 10.1344 6.9490 -0.4523 25 6 8.7925 6.9381 -0.7562 26 7 8.0228 5.9219 -0.4107 27 6 3.9833 3.0019 -0.0001 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 4.3255 0.0174 0.8833 34 1 4.3487 0.0410 -0.9022 35 1 6.1727 1.4987 -0.9801 36 1 6.4787 0.8835 0.6774 37 1 7.9515 3.0859 1.1163 38 1 10.2143 3.9226 1.1093 39 1 11.9700 6.4825 -1.8574 40 1 10.7546 7.7852 -0.7396 41 1 8.3614 7.7746 -1.2862 42 1 3.4057 3.6915 0.6155 43 1 4.0684 3.3812 -1.0184 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533449706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:26 Heat of formation + Delta-G solvation = -44.971763 kcal Electronic energy + Delta-G solvation = -25506.052226 eV Core-core repulsion = 21743.642040 eV Total energy + Delta-G solvation = -3762.410185 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.62443 -39.62086 -38.27655 -37.09864 -34.81277 -33.78108 -33.19694 -31.89712 -30.58204 -29.47826 -28.62924 -25.93108 -25.55497 -23.28650 -22.76734 -22.04676 -21.20588 -19.67268 -19.37972 -18.28281 -17.65729 -17.42467 -16.24147 -16.03152 -15.56517 -15.10149 -14.77748 -14.48368 -14.44405 -14.22518 -13.96094 -13.69692 -13.64983 -13.15680 -13.02586 -12.69840 -12.61971 -12.50732 -12.42446 -12.08531 -11.91511 -11.81631 -11.50494 -11.47541 -11.25409 -11.15062 -10.56433 -10.48009 -10.08992 -10.05749 -9.88201 -9.54215 -9.21871 -8.89071 -8.28385 -7.88290 -7.46130 -7.16456 -4.75253 2.32850 2.41752 2.64525 2.72429 3.06412 3.11081 3.26974 3.33337 3.42818 3.90354 4.04322 4.17285 4.45604 4.52890 4.55728 4.73815 4.76698 4.90449 4.98376 5.04878 5.13412 5.25744 5.42071 5.45374 5.46151 5.57907 5.65465 5.73401 5.83096 5.85382 5.91674 6.02608 6.39366 6.41820 6.58098 6.70989 7.19356 7.21916 7.24705 7.43277 7.54511 7.77238 7.93873 7.94562 8.11443 8.46621 8.59909 8.70284 9.51911 9.86185 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.043226 B = 0.002208 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.609874 B =12675.747304 C =13076.017868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.525 3.475 4 O -0.538 6.538 5 N -0.623 5.623 6 C 0.103 3.897 7 C -0.123 4.123 8 C -0.125 4.125 9 H 0.109 0.891 10 C 0.511 3.489 11 O -0.472 6.472 12 N -0.659 5.659 13 C 0.359 3.641 14 C -0.310 4.310 15 C 0.129 3.871 16 C -0.513 4.513 17 H 0.080 0.920 18 C 0.042 3.958 19 N -0.780 5.780 20 Si 1.066 2.934 21 H -0.272 1.272 22 H -0.273 1.273 23 H -0.275 1.275 24 C -0.282 4.282 25 C 0.127 3.873 26 N -0.564 5.564 27 C 0.125 3.875 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.407 0.593 38 H 0.102 0.898 39 H 0.301 0.699 40 H 0.113 0.887 41 H 0.126 0.874 42 H 0.084 0.916 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.493 -15.612 4.362 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.314 3.686 4 O -0.415 6.415 5 N -0.358 5.358 6 C -0.021 4.021 7 C -0.161 4.161 8 C -0.147 4.147 9 H 0.127 0.873 10 C 0.294 3.706 11 O -0.341 6.341 12 N -0.304 5.304 13 C 0.133 3.867 14 C -0.336 4.336 15 C 0.121 3.879 16 C -0.543 4.543 17 H 0.098 0.902 18 C -0.182 4.182 19 N -0.402 5.402 20 Si 0.889 3.111 21 H -0.197 1.197 22 H -0.198 1.198 23 H -0.200 1.200 24 C -0.305 4.305 25 C -0.025 4.025 26 N -0.284 5.284 27 C 0.003 3.997 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.241 0.759 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.131 0.869 41 H 0.143 0.857 42 H 0.102 0.898 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.943 -13.552 3.256 18.355 hybrid contribution -0.092 -1.452 0.829 1.675 sum -12.035 -15.005 4.085 19.664 Atomic orbital electron populations 1.21543 0.92946 1.01577 1.03472 1.21616 0.98571 0.93458 1.04225 1.20485 0.80201 0.92001 0.75892 1.90726 1.54240 1.46784 1.49753 1.48574 1.05242 1.08168 1.73801 1.22054 0.86552 0.91333 1.02117 1.22674 0.96636 0.93710 1.03104 1.22503 0.95060 0.94877 1.02308 0.87266 1.20138 0.82427 0.86265 0.81744 1.90820 1.76097 1.35519 1.31660 1.43433 1.10262 1.23402 1.53340 1.18042 0.86622 0.87644 0.94415 1.21091 0.92206 1.02008 1.18322 1.17595 0.93274 0.89033 0.87985 1.20549 0.91913 1.25526 1.16268 0.90231 1.27121 1.04106 0.92589 0.94423 1.70428 1.27281 1.32604 1.09876 0.83627 0.73671 0.77535 0.76295 1.19710 1.19806 1.19988 1.22009 0.95974 1.00767 1.11773 1.21825 0.90462 0.94476 0.95706 1.67244 1.38472 1.02194 1.20503 1.22009 0.90544 0.84437 1.02724 0.92028 0.91950 0.91920 0.88973 0.88986 0.90868 0.90863 0.89604 0.88884 0.75866 0.88030 0.88549 0.86936 0.85682 0.89767 0.89615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.20 37.16 0.34 -0.69 16 2 C -0.14 -0.99 5.61 -27.88 -0.16 -1.15 16 3 C 0.53 6.08 7.85 -10.99 -0.09 5.99 16 4 O -0.54 -8.57 16.24 5.56 0.09 -8.48 16 5 N -0.62 -6.59 3.33 -170.53 -0.57 -7.16 16 6 C 0.10 0.71 6.49 -3.07 -0.02 0.69 16 7 C -0.12 -0.97 6.41 -24.90 -0.16 -1.13 16 8 C -0.13 -1.39 3.43 -89.64 -0.31 -1.70 16 9 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 10 C 0.51 8.50 7.10 -10.99 -0.08 8.42 16 11 O -0.47 -10.19 14.01 5.56 0.08 -10.11 16 12 N -0.66 -11.19 5.39 -11.49 -0.06 -11.25 16 13 C 0.36 8.08 7.40 -154.70 -1.15 6.94 16 14 C -0.31 -7.22 9.73 -38.48 -0.37 -7.59 16 15 C 0.13 3.31 5.34 -106.55 -0.57 2.74 16 16 C -0.51 -12.93 9.02 -37.65 -0.34 -13.27 16 17 H 0.08 1.93 7.98 -52.49 -0.42 1.51 16 18 C 0.04 1.02 4.93 -17.34 -0.09 0.93 16 19 N -0.78 -19.84 12.32 55.55 0.68 -19.15 16 20 Si 1.07 20.36 30.02 -169.99 -5.10 15.26 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 22 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 23 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 24 C -0.28 -7.10 8.12 -38.71 -0.31 -7.41 16 25 C 0.13 3.09 11.15 -17.68 -0.20 2.89 16 26 N -0.56 -14.01 7.89 -12.52 -0.10 -14.11 16 27 C 0.13 1.62 6.03 -2.54 -0.02 1.60 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 30 H 0.06 0.55 8.10 -51.93 -0.42 0.12 16 31 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.78 8.03 -51.93 -0.42 0.37 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.41 5.16 8.70 -40.82 -0.36 4.80 16 38 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 39 H 0.30 7.92 6.86 -40.82 -0.28 7.64 16 40 H 0.11 2.87 6.57 -52.49 -0.34 2.52 16 41 H 0.13 2.73 8.06 -52.49 -0.42 2.31 16 42 H 0.08 1.19 8.04 -51.93 -0.42 0.78 16 43 H 0.09 1.29 7.40 -51.93 -0.38 0.91 16 LS Contribution 361.20 15.07 5.44 5.44 Total: -1.00 -33.82 361.20 -9.10 -42.92 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -6.06 Total: 9.38 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -3.51 Total: -2.75 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: -0.04 Total: -51.67 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.17 Total: -18.59 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.10 Total: 15.26 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.82 -9.10 -42.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533449706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.055 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds