Wall clock time and date at job start Tue Mar 31 2020 12:43:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.50702 * 109.47333 * 2 1
4 4 O 1.21279 * 119.99909 * 359.97438 * 3 2 1
5 5 N 1.34772 * 120.00025 * 180.02562 * 3 2 1
6 6 C 1.47018 * 125.64994 * 359.95602 * 5 3 2
7 7 C 1.54324 * 107.27046 * 181.09313 * 6 5 3
8 8 C 1.55157 * 102.94424 * 22.19726 * 7 6 5
9 9 H 1.09000 * 111.03609 * 82.58160 * 8 7 6
10 10 C 1.50694 * 111.00655 * 206.42258 * 8 7 6
11 11 O 1.21278 * 120.00263 * 112.19312 * 10 8 7
12 12 N 1.34782 * 119.99684 * 292.19190 * 10 8 7
13 13 C 1.39474 * 119.99939 * 185.28030 * 12 10 8
14 14 C 1.38596 * 119.57997 * 185.43988 * 13 12 10
15 15 C 1.40815 * 118.79329 * 180.24499 * 14 13 12
16 16 C 1.41543 * 120.99456 * 179.72848 * 15 14 13
17 17 H 1.07996 * 120.00303 * 336.42741 * 16 15 14
18 18 C 1.40034 * 119.99767 * 156.42455 * 16 15 14
19 19 N 1.30745 * 119.99916 * 331.68597 * 18 16 15
20 20 Si 1.86798 * 119.99933 * 151.69022 * 18 16 15
21 21 H 1.48504 * 109.47085 * 180.02562 * 20 18 16
22 22 H 1.48503 * 109.46993 * 299.99829 * 20 18 16
23 23 H 1.48498 * 109.47262 * 59.99641 * 20 18 16
24 24 C 1.41175 * 118.00497 * 359.46464 * 15 14 13
25 25 C 1.37586 * 119.01965 * 0.26588 * 24 15 14
26 26 N 1.32082 * 121.10643 * 0.02562 * 25 24 15
27 27 C 1.47428 * 125.64736 * 180.02562 * 5 3 2
28 28 H 1.09002 * 109.47230 * 180.02562 * 1 2 3
29 29 H 1.08999 * 109.46857 * 300.00010 * 1 2 3
30 30 H 1.09000 * 109.46948 * 59.99946 * 1 2 3
31 31 H 1.09009 * 109.46856 * 240.00016 * 2 1 3
32 32 H 1.08999 * 109.47662 * 120.00260 * 2 1 3
33 33 H 1.09001 * 109.88454 * 300.51209 * 6 5 3
34 34 H 1.09004 * 109.88408 * 61.68467 * 6 5 3
35 35 H 1.09002 * 110.72832 * 263.82968 * 7 6 5
36 36 H 1.09003 * 110.72016 * 140.55667 * 7 6 5
37 37 H 0.96995 * 120.00414 * 5.28378 * 12 10 8
38 38 H 1.07997 * 120.60560 * 0.02562 * 14 13 12
39 39 H 0.97004 * 120.00173 * 354.07912 * 19 18 16
40 40 H 1.08002 * 120.48851 * 180.29433 * 24 15 14
41 41 H 1.07999 * 119.44636 * 180.02562 * 25 24 15
42 42 H 1.09000 * 110.36754 * 36.99405 * 27 5 3
43 43 H 1.09005 * 110.36370 * 274.67218 * 27 5 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 8 1.2443 2.3427 -0.0005
5 7 3.3574 1.6670 -0.0005
6 6 4.4181 0.6490 -0.0002
7 6 5.7689 1.3948 0.0271
8 6 5.3889 2.7809 0.6118
9 1 5.3399 2.7463 1.7001
10 6 6.3522 3.8441 0.1508
11 8 5.9767 4.7170 -0.6028
12 7 7.6310 3.8250 0.5761
13 6 8.4936 4.8680 0.2393
14 6 9.8336 4.7859 0.5838
15 6 10.6886 5.8507 0.2402
16 6 12.0637 5.8181 0.5742
17 1 12.4060 5.2037 1.3937
18 6 12.9803 6.5827 -0.1580
19 7 12.7391 6.8695 -1.4106
20 14 14.5476 7.1928 0.6548
21 1 15.3427 7.9737 -0.3268
22 1 14.2012 8.0582 1.8108
23 1 15.3447 6.0321 1.1267
24 6 10.1344 6.9490 -0.4523
25 6 8.7925 6.9381 -0.7562
26 7 8.0228 5.9219 -0.4107
27 6 3.9833 3.0019 -0.0001
28 1 -0.3634 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 1.8933 -0.5139 -0.8901
32 1 1.8934 -0.5139 0.8899
33 1 4.3255 0.0174 0.8833
34 1 4.3487 0.0410 -0.9022
35 1 6.1727 1.4987 -0.9801
36 1 6.4787 0.8835 0.6774
37 1 7.9515 3.0859 1.1163
38 1 10.2143 3.9226 1.1093
39 1 11.9700 6.4825 -1.8574
40 1 10.7546 7.7852 -0.7396
41 1 8.3614 7.7746 -1.2862
42 1 3.4057 3.6915 0.6155
43 1 4.0684 3.3812 -1.0184
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000533449706.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:43:26
Heat of formation + Delta-G solvation = -44.971763 kcal
Electronic energy + Delta-G solvation = -25506.052226 eV
Core-core repulsion = 21743.642040 eV
Total energy + Delta-G solvation = -3762.410185 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 317.153 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.62443 -39.62086 -38.27655 -37.09864 -34.81277 -33.78108 -33.19694 -31.89712
-30.58204 -29.47826 -28.62924 -25.93108 -25.55497 -23.28650 -22.76734 -22.04676
-21.20588 -19.67268 -19.37972 -18.28281 -17.65729 -17.42467 -16.24147 -16.03152
-15.56517 -15.10149 -14.77748 -14.48368 -14.44405 -14.22518 -13.96094 -13.69692
-13.64983 -13.15680 -13.02586 -12.69840 -12.61971 -12.50732 -12.42446 -12.08531
-11.91511 -11.81631 -11.50494 -11.47541 -11.25409 -11.15062 -10.56433 -10.48009
-10.08992 -10.05749 -9.88201 -9.54215 -9.21871 -8.89071 -8.28385 -7.88290
-7.46130 -7.16456 -4.75253 2.32850 2.41752 2.64525 2.72429 3.06412
3.11081 3.26974 3.33337 3.42818 3.90354 4.04322 4.17285 4.45604
4.52890 4.55728 4.73815 4.76698 4.90449 4.98376 5.04878 5.13412
5.25744 5.42071 5.45374 5.46151 5.57907 5.65465 5.73401 5.83096
5.85382 5.91674 6.02608 6.39366 6.41820 6.58098 6.70989 7.19356
7.21916 7.24705 7.43277 7.54511 7.77238 7.93873 7.94562 8.11443
8.46621 8.59909 8.70284 9.51911 9.86185
Molecular weight = 317.15amu
Principal moments of inertia in cm(-1)
A = 0.043226 B = 0.002208 C = 0.002141
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 647.609874 B =12675.747304 C =13076.017868
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.139 4.139
3 C 0.525 3.475
4 O -0.538 6.538
5 N -0.623 5.623
6 C 0.103 3.897
7 C -0.123 4.123
8 C -0.125 4.125
9 H 0.109 0.891
10 C 0.511 3.489
11 O -0.472 6.472
12 N -0.659 5.659
13 C 0.359 3.641
14 C -0.310 4.310
15 C 0.129 3.871
16 C -0.513 4.513
17 H 0.080 0.920
18 C 0.042 3.958
19 N -0.780 5.780
20 Si 1.066 2.934
21 H -0.272 1.272
22 H -0.273 1.273
23 H -0.275 1.275
24 C -0.282 4.282
25 C 0.127 3.873
26 N -0.564 5.564
27 C 0.125 3.875
28 H 0.061 0.939
29 H 0.061 0.939
30 H 0.062 0.938
31 H 0.092 0.908
32 H 0.092 0.908
33 H 0.073 0.927
34 H 0.073 0.927
35 H 0.085 0.915
36 H 0.093 0.907
37 H 0.407 0.593
38 H 0.102 0.898
39 H 0.301 0.699
40 H 0.113 0.887
41 H 0.126 0.874
42 H 0.084 0.916
43 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.493 -15.612 4.362 19.871
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.179 4.179
3 C 0.314 3.686
4 O -0.415 6.415
5 N -0.358 5.358
6 C -0.021 4.021
7 C -0.161 4.161
8 C -0.147 4.147
9 H 0.127 0.873
10 C 0.294 3.706
11 O -0.341 6.341
12 N -0.304 5.304
13 C 0.133 3.867
14 C -0.336 4.336
15 C 0.121 3.879
16 C -0.543 4.543
17 H 0.098 0.902
18 C -0.182 4.182
19 N -0.402 5.402
20 Si 0.889 3.111
21 H -0.197 1.197
22 H -0.198 1.198
23 H -0.200 1.200
24 C -0.305 4.305
25 C -0.025 4.025
26 N -0.284 5.284
27 C 0.003 3.997
28 H 0.080 0.920
29 H 0.080 0.920
30 H 0.081 0.919
31 H 0.110 0.890
32 H 0.110 0.890
33 H 0.091 0.909
34 H 0.091 0.909
35 H 0.104 0.896
36 H 0.111 0.889
37 H 0.241 0.759
38 H 0.120 0.880
39 H 0.115 0.885
40 H 0.131 0.869
41 H 0.143 0.857
42 H 0.102 0.898
43 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -11.943 -13.552 3.256 18.355
hybrid contribution -0.092 -1.452 0.829 1.675
sum -12.035 -15.005 4.085 19.664
Atomic orbital electron populations
1.21543 0.92946 1.01577 1.03472 1.21616 0.98571 0.93458 1.04225
1.20485 0.80201 0.92001 0.75892 1.90726 1.54240 1.46784 1.49753
1.48574 1.05242 1.08168 1.73801 1.22054 0.86552 0.91333 1.02117
1.22674 0.96636 0.93710 1.03104 1.22503 0.95060 0.94877 1.02308
0.87266 1.20138 0.82427 0.86265 0.81744 1.90820 1.76097 1.35519
1.31660 1.43433 1.10262 1.23402 1.53340 1.18042 0.86622 0.87644
0.94415 1.21091 0.92206 1.02008 1.18322 1.17595 0.93274 0.89033
0.87985 1.20549 0.91913 1.25526 1.16268 0.90231 1.27121 1.04106
0.92589 0.94423 1.70428 1.27281 1.32604 1.09876 0.83627 0.73671
0.77535 0.76295 1.19710 1.19806 1.19988 1.22009 0.95974 1.00767
1.11773 1.21825 0.90462 0.94476 0.95706 1.67244 1.38472 1.02194
1.20503 1.22009 0.90544 0.84437 1.02724 0.92028 0.91950 0.91920
0.88973 0.88986 0.90868 0.90863 0.89604 0.88884 0.75866 0.88030
0.88549 0.86936 0.85682 0.89767 0.89615
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.03 9.20 37.16 0.34 -0.69 16
2 C -0.14 -0.99 5.61 -27.88 -0.16 -1.15 16
3 C 0.53 6.08 7.85 -10.99 -0.09 5.99 16
4 O -0.54 -8.57 16.24 5.56 0.09 -8.48 16
5 N -0.62 -6.59 3.33 -170.53 -0.57 -7.16 16
6 C 0.10 0.71 6.49 -3.07 -0.02 0.69 16
7 C -0.12 -0.97 6.41 -24.90 -0.16 -1.13 16
8 C -0.13 -1.39 3.43 -89.64 -0.31 -1.70 16
9 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16
10 C 0.51 8.50 7.10 -10.99 -0.08 8.42 16
11 O -0.47 -10.19 14.01 5.56 0.08 -10.11 16
12 N -0.66 -11.19 5.39 -11.49 -0.06 -11.25 16
13 C 0.36 8.08 7.40 -154.70 -1.15 6.94 16
14 C -0.31 -7.22 9.73 -38.48 -0.37 -7.59 16
15 C 0.13 3.31 5.34 -106.55 -0.57 2.74 16
16 C -0.51 -12.93 9.02 -37.65 -0.34 -13.27 16
17 H 0.08 1.93 7.98 -52.49 -0.42 1.51 16
18 C 0.04 1.02 4.93 -17.34 -0.09 0.93 16
19 N -0.78 -19.84 12.32 55.55 0.68 -19.15 16
20 Si 1.07 20.36 30.02 -169.99 -5.10 15.26 16
21 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16
22 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16
23 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16
24 C -0.28 -7.10 8.12 -38.71 -0.31 -7.41 16
25 C 0.13 3.09 11.15 -17.68 -0.20 2.89 16
26 N -0.56 -14.01 7.89 -12.52 -0.10 -14.11 16
27 C 0.13 1.62 6.03 -2.54 -0.02 1.60 16
28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16
29 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16
30 H 0.06 0.55 8.10 -51.93 -0.42 0.12 16
31 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16
32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16
33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16
34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
35 H 0.09 0.78 8.03 -51.93 -0.42 0.37 16
36 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16
37 H 0.41 5.16 8.70 -40.82 -0.36 4.80 16
38 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16
39 H 0.30 7.92 6.86 -40.82 -0.28 7.64 16
40 H 0.11 2.87 6.57 -52.49 -0.34 2.52 16
41 H 0.13 2.73 8.06 -52.49 -0.42 2.31 16
42 H 0.08 1.19 8.04 -51.93 -0.42 0.78 16
43 H 0.09 1.29 7.40 -51.93 -0.38 0.91 16
LS Contribution 361.20 15.07 5.44 5.44
Total: -1.00 -33.82 361.20 -9.10 -42.92
By element:
Atomic # 1 Polarization: 15.44 SS G_CDS: -6.06 Total: 9.38 kcal
Atomic # 6 Polarization: 0.76 SS G_CDS: -3.51 Total: -2.75 kcal
Atomic # 7 Polarization: -51.63 SS G_CDS: -0.04 Total: -51.67 kcal
Atomic # 8 Polarization: -18.75 SS G_CDS: 0.17 Total: -18.59 kcal
Atomic # 14 Polarization: 20.36 SS G_CDS: -5.10 Total: 15.26 kcal
Total LS contribution 5.44 Total: 5.44 kcal
Total: -33.82 -9.10 -42.92 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000533449706.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.055 kcal
(2) G-P(sol) polarization free energy of solvation -33.817 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.871 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.917 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.972 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds