Wall clock time and date at job start Tue Mar 31 2020 12:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47333 * 2 1 4 4 O 1.21279 * 119.99909 * 359.97438 * 3 2 1 5 5 N 1.34772 * 120.00025 * 180.02562 * 3 2 1 6 6 C 1.47018 * 125.64994 * 359.95602 * 5 3 2 7 7 C 1.54324 * 107.27046 * 181.09313 * 6 5 3 8 8 C 1.55157 * 102.94424 * 22.19726 * 7 6 5 9 9 H 1.09000 * 111.03609 * 82.58160 * 8 7 6 10 10 C 1.50694 * 111.00655 * 206.42258 * 8 7 6 11 11 O 1.21278 * 120.00263 * 112.19312 * 10 8 7 12 12 N 1.34782 * 119.99684 * 292.19190 * 10 8 7 13 13 C 1.39474 * 119.99939 * 185.28030 * 12 10 8 14 14 C 1.38596 * 119.57997 * 185.43988 * 13 12 10 15 15 C 1.40815 * 118.79329 * 180.24499 * 14 13 12 16 16 C 1.41543 * 120.99456 * 179.72848 * 15 14 13 17 17 H 1.07996 * 120.00303 * 336.42741 * 16 15 14 18 18 C 1.40034 * 119.99767 * 156.42455 * 16 15 14 19 19 N 1.30745 * 119.99916 * 331.68597 * 18 16 15 20 20 Si 1.86798 * 119.99933 * 151.69022 * 18 16 15 21 21 H 1.48504 * 109.47085 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.46993 * 299.99829 * 20 18 16 23 23 H 1.48498 * 109.47262 * 59.99641 * 20 18 16 24 24 C 1.41175 * 118.00497 * 359.46464 * 15 14 13 25 25 C 1.37586 * 119.01965 * 0.26588 * 24 15 14 26 26 N 1.32082 * 121.10643 * 0.02562 * 25 24 15 27 27 C 1.47428 * 125.64736 * 180.02562 * 5 3 2 28 28 H 1.09002 * 109.47230 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46857 * 300.00010 * 1 2 3 30 30 H 1.09000 * 109.46948 * 59.99946 * 1 2 3 31 31 H 1.09009 * 109.46856 * 240.00016 * 2 1 3 32 32 H 1.08999 * 109.47662 * 120.00260 * 2 1 3 33 33 H 1.09001 * 109.88454 * 300.51209 * 6 5 3 34 34 H 1.09004 * 109.88408 * 61.68467 * 6 5 3 35 35 H 1.09002 * 110.72832 * 263.82968 * 7 6 5 36 36 H 1.09003 * 110.72016 * 140.55667 * 7 6 5 37 37 H 0.96995 * 120.00414 * 5.28378 * 12 10 8 38 38 H 1.07997 * 120.60560 * 0.02562 * 14 13 12 39 39 H 0.97004 * 120.00173 * 354.07912 * 19 18 16 40 40 H 1.08002 * 120.48851 * 180.29433 * 24 15 14 41 41 H 1.07999 * 119.44636 * 180.02562 * 25 24 15 42 42 H 1.09000 * 110.36754 * 36.99405 * 27 5 3 43 43 H 1.09005 * 110.36370 * 274.67218 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3574 1.6670 -0.0005 6 6 4.4181 0.6490 -0.0002 7 6 5.7689 1.3948 0.0271 8 6 5.3889 2.7809 0.6118 9 1 5.3399 2.7463 1.7001 10 6 6.3522 3.8441 0.1508 11 8 5.9767 4.7170 -0.6028 12 7 7.6310 3.8250 0.5761 13 6 8.4936 4.8680 0.2393 14 6 9.8336 4.7859 0.5838 15 6 10.6886 5.8507 0.2402 16 6 12.0637 5.8181 0.5742 17 1 12.4060 5.2037 1.3937 18 6 12.9803 6.5827 -0.1580 19 7 12.7391 6.8695 -1.4106 20 14 14.5476 7.1928 0.6548 21 1 15.3427 7.9737 -0.3268 22 1 14.2012 8.0582 1.8108 23 1 15.3447 6.0321 1.1267 24 6 10.1344 6.9490 -0.4523 25 6 8.7925 6.9381 -0.7562 26 7 8.0228 5.9219 -0.4107 27 6 3.9833 3.0019 -0.0001 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 4.3255 0.0174 0.8833 34 1 4.3487 0.0410 -0.9022 35 1 6.1727 1.4987 -0.9801 36 1 6.4787 0.8835 0.6774 37 1 7.9515 3.0859 1.1163 38 1 10.2143 3.9226 1.1093 39 1 11.9700 6.4825 -1.8574 40 1 10.7546 7.7852 -0.7396 41 1 8.3614 7.7746 -1.2862 42 1 3.4057 3.6915 0.6155 43 1 4.0684 3.3812 -1.0184 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533449706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:26 Heat of formation + Delta-G solvation = -67.169184 kcal Electronic energy + Delta-G solvation = -25507.014778 eV Core-core repulsion = 21743.642040 eV Total energy + Delta-G solvation = -3763.372738 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.75930 -40.90029 -39.83430 -38.18562 -36.56421 -35.46349 -33.93075 -32.77370 -32.47365 -30.53523 -30.07588 -27.75326 -26.54689 -24.39263 -23.89586 -23.51688 -22.68968 -21.03407 -20.20126 -20.02470 -18.80524 -18.26148 -17.85623 -17.06127 -16.61191 -16.38664 -16.29108 -16.17909 -15.81208 -15.61748 -15.20650 -14.73077 -14.62922 -14.52732 -14.44886 -14.07099 -13.89608 -13.64957 -13.54364 -13.13562 -12.89946 -12.83542 -12.59644 -12.43781 -12.33526 -12.07662 -11.98818 -11.86638 -11.78984 -11.55160 -11.03815 -11.02502 -10.96967 -10.21177 -9.78484 -9.69938 -9.35183 -8.96313 -6.70358 0.57206 0.88614 1.52919 1.57024 1.60963 1.71986 1.78756 1.83727 2.19101 2.31644 2.70015 3.18650 3.35195 3.54809 3.66072 3.74089 3.97238 4.14247 4.20519 4.21427 4.22723 4.29127 4.55313 4.58575 4.68438 4.70365 4.74425 4.76326 4.81910 4.86455 4.92480 4.98702 5.03732 5.09651 5.19473 5.29602 5.35992 5.41271 5.51292 5.69149 6.03968 6.11475 6.44549 6.48435 6.56452 6.78312 7.09475 7.19775 7.71699 7.91643 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.043226 B = 0.002208 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.609874 B =12675.747304 C =13076.017868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.514 3.486 4 O -0.596 6.596 5 N -0.621 5.621 6 C 0.100 3.900 7 C -0.117 4.117 8 C -0.107 4.107 9 H 0.141 0.859 10 C 0.509 3.491 11 O -0.527 6.527 12 N -0.644 5.644 13 C 0.358 3.642 14 C -0.316 4.316 15 C 0.103 3.897 16 C -0.535 4.535 17 H 0.087 0.913 18 C 0.008 3.992 19 N -0.798 5.798 20 Si 1.118 2.882 21 H -0.273 1.273 22 H -0.264 1.264 23 H -0.251 1.251 24 C -0.297 4.297 25 C 0.120 3.880 26 N -0.588 5.588 27 C 0.124 3.876 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.133 0.867 37 H 0.429 0.571 38 H 0.126 0.874 39 H 0.285 0.715 40 H 0.101 0.899 41 H 0.140 0.860 42 H 0.061 0.939 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.729 -19.193 6.198 22.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.305 3.695 4 O -0.477 6.477 5 N -0.355 5.355 6 C -0.021 4.021 7 C -0.154 4.154 8 C -0.129 4.129 9 H 0.158 0.842 10 C 0.296 3.704 11 O -0.400 6.400 12 N -0.292 5.292 13 C 0.130 3.870 14 C -0.342 4.342 15 C 0.095 3.905 16 C -0.564 4.564 17 H 0.105 0.895 18 C -0.211 4.211 19 N -0.420 5.420 20 Si 0.935 3.065 21 H -0.198 1.198 22 H -0.189 1.189 23 H -0.175 1.175 24 C -0.321 4.321 25 C -0.031 4.031 26 N -0.308 5.308 27 C 0.000 4.000 28 H 0.109 0.891 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.136 0.864 32 H 0.143 0.857 33 H 0.130 0.870 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.151 0.849 37 H 0.269 0.731 38 H 0.144 0.856 39 H 0.097 0.903 40 H 0.119 0.881 41 H 0.158 0.842 42 H 0.079 0.921 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.173 -17.231 5.118 21.165 hybrid contribution -0.438 -0.367 0.224 0.614 sum -11.611 -17.598 5.342 21.750 Atomic orbital electron populations 1.21564 0.93649 1.02806 1.01658 1.21691 0.97858 0.90290 1.06875 1.21479 0.79943 0.93456 0.74601 1.90701 1.55756 1.48868 1.52409 1.48689 1.05917 1.07894 1.72976 1.22386 0.84201 0.90504 1.05028 1.22788 0.98277 0.91469 1.02909 1.22400 0.91964 0.94759 1.03790 0.84165 1.21109 0.82499 0.86500 0.80307 1.90805 1.76959 1.38079 1.34164 1.43380 1.09928 1.22683 1.53187 1.18337 0.87454 0.88079 0.93098 1.21308 0.92346 1.02195 1.18338 1.17997 0.94268 0.89824 0.88454 1.20816 0.92149 1.26621 1.16809 0.89515 1.28588 1.06744 0.91779 0.94034 1.70545 1.27006 1.33562 1.10867 0.82993 0.70147 0.77929 0.75476 1.19800 1.18881 1.17497 1.21956 0.96228 1.00888 1.13033 1.22100 0.90339 0.95108 0.95603 1.67364 1.38951 1.03070 1.21427 1.21763 0.91803 0.85853 1.00573 0.89109 0.93640 0.94021 0.86409 0.85738 0.87033 0.88811 0.91087 0.84928 0.73145 0.85606 0.90326 0.88127 0.84233 0.92085 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.20 71.98 0.66 -1.19 16 2 C -0.13 -1.40 5.61 29.85 0.17 -1.23 16 3 C 0.51 11.32 7.85 87.66 0.69 12.01 16 4 O -0.60 -19.70 16.24 -3.03 -0.05 -19.74 16 5 N -0.62 -11.98 3.33 -811.83 -2.70 -14.68 16 6 C 0.10 0.91 6.49 86.73 0.56 1.47 16 7 C -0.12 -1.37 6.41 31.78 0.20 -1.17 16 8 C -0.11 -2.16 3.43 -10.16 -0.03 -2.20 16 9 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 10 C 0.51 16.63 7.10 87.65 0.62 17.26 16 11 O -0.53 -23.49 14.01 -3.02 -0.04 -23.53 16 12 N -0.64 -20.89 5.39 -308.65 -1.66 -22.55 16 13 C 0.36 16.02 7.40 132.75 0.98 17.00 16 14 C -0.32 -14.56 9.73 22.99 0.22 -14.34 16 15 C 0.10 5.32 5.34 -21.11 -0.11 5.21 16 16 C -0.53 -26.99 9.02 23.52 0.21 -26.78 16 17 H 0.09 4.13 7.98 -2.91 -0.02 4.11 16 18 C 0.01 0.37 4.93 85.29 0.42 0.79 16 19 N -0.80 -41.44 12.32 21.84 0.27 -41.17 16 20 Si 1.12 40.10 30.02 68.60 2.06 42.16 16 21 H -0.27 -9.77 7.11 99.48 0.71 -9.07 16 22 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 23 H -0.25 -8.03 7.11 99.48 0.71 -7.33 16 24 C -0.30 -15.50 8.12 22.84 0.19 -15.32 16 25 C 0.12 6.05 11.15 84.50 0.94 6.99 16 26 N -0.59 -29.78 7.89 -193.53 -1.53 -31.30 16 27 C 0.12 3.22 6.03 86.85 0.52 3.75 16 28 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.04 0.75 8.10 -2.39 -0.02 0.73 16 30 H 0.04 0.72 8.10 -2.39 -0.02 0.70 16 31 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.07 1.10 8.03 -2.39 -0.02 1.08 16 36 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.43 9.54 8.70 -92.71 -0.81 8.73 16 38 H 0.13 5.03 8.06 -2.91 -0.02 5.01 16 39 H 0.28 15.58 6.86 -92.70 -0.64 14.94 16 40 H 0.10 5.38 6.57 -2.91 -0.02 5.36 16 41 H 0.14 6.34 8.06 -2.91 -0.02 6.32 16 42 H 0.06 1.83 8.04 -2.39 -0.02 1.81 16 43 H 0.05 1.72 7.40 -2.38 -0.02 1.70 16 Total: -1.00 -80.36 361.20 2.95 -77.41 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: 0.36 Total: 31.15 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 6.25 Total: 2.26 kcal Atomic # 7 Polarization: -104.09 SS G_CDS: -5.62 Total: -109.71 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -0.09 Total: -43.28 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.06 Total: 42.16 kcal Total: -80.36 2.95 -77.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533449706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.239 kcal (2) G-P(sol) polarization free energy of solvation -80.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds