Wall clock time and date at job start Tue Mar 31 2020 12:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50709 * 109.46809 * 2 1 4 4 O 1.21280 * 120.00052 * 0.02562 * 3 2 1 5 5 N 1.34775 * 119.99861 * 180.02562 * 3 2 1 6 6 C 1.47430 * 125.64634 * 0.04427 * 5 3 2 7 7 C 1.54914 * 104.82943 * 204.09042 * 6 5 3 8 8 C 1.55157 * 101.58083 * 322.98974 * 7 6 5 9 9 H 1.08994 * 110.87556 * 277.06417 * 8 7 6 10 10 C 1.50701 * 110.71855 * 153.86517 * 8 7 6 11 11 O 1.21274 * 120.00178 * 246.47860 * 10 8 7 12 12 N 1.34777 * 120.00171 * 66.47351 * 10 8 7 13 13 C 1.39472 * 120.00183 * 184.88574 * 12 10 8 14 14 C 1.38598 * 119.57653 * 174.58179 * 13 12 10 15 15 C 1.40816 * 118.79461 * 180.02562 * 14 13 12 16 16 C 1.41543 * 120.99864 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99778 * 327.29073 * 16 15 14 18 18 C 1.40031 * 119.99870 * 147.29140 * 16 15 14 19 19 N 1.30743 * 120.00226 * 359.62314 * 18 16 15 20 20 Si 1.86798 * 119.99796 * 179.61889 * 18 16 15 21 21 H 1.48502 * 109.47042 * 84.99710 * 20 18 16 22 22 H 1.48500 * 109.47311 * 204.99894 * 20 18 16 23 23 H 1.48499 * 109.47199 * 324.99963 * 20 18 16 24 24 C 1.41179 * 118.00285 * 0.24991 * 15 14 13 25 25 C 1.37585 * 119.01512 * 359.52028 * 24 15 14 26 26 N 1.32083 * 121.11242 * 0.49595 * 25 24 15 27 27 C 1.47015 * 125.64996 * 179.97438 * 5 3 2 28 28 H 1.09001 * 109.47256 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46897 * 299.99940 * 1 2 3 30 30 H 1.08997 * 109.47960 * 59.99459 * 1 2 3 31 31 H 1.08997 * 109.47057 * 240.00222 * 2 1 3 32 32 H 1.08995 * 109.47434 * 119.99996 * 2 1 3 33 33 H 1.08994 * 110.36981 * 322.92503 * 6 5 3 34 34 H 1.09003 * 110.36869 * 85.25561 * 6 5 3 35 35 H 1.08999 * 111.00417 * 204.91497 * 7 6 5 36 36 H 1.09000 * 111.00275 * 81.06608 * 7 6 5 37 37 H 0.97003 * 119.99605 * 4.89070 * 12 10 8 38 38 H 1.07997 * 120.60799 * 359.97438 * 14 13 12 39 39 H 0.96997 * 120.00089 * 179.97438 * 19 18 16 40 40 H 1.07998 * 120.48686 * 179.72933 * 24 15 14 41 41 H 1.08005 * 119.44478 * 180.20342 * 25 24 15 42 42 H 1.09002 * 109.87899 * 59.56129 * 27 5 3 43 43 H 1.08997 * 110.01312 * 298.47092 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6672 -0.0005 6 6 4.4209 0.6464 -0.0020 7 6 5.6540 1.3576 0.6092 8 6 5.5100 2.7878 0.0250 9 1 5.9233 2.8393 -0.9822 10 6 6.1726 3.8000 0.9235 11 8 5.5018 4.6273 1.5033 12 7 7.5109 3.7857 1.0829 13 6 8.1143 4.6549 1.9915 14 6 9.4758 4.5565 2.2316 15 6 10.0678 5.4420 3.1526 16 6 11.4539 5.3824 3.4334 17 1 11.9698 4.4340 3.4074 18 6 12.1560 6.5532 3.7450 19 7 11.5330 7.7023 3.7693 20 14 13.9830 6.4731 4.1260 21 1 14.7554 6.5167 2.8584 22 1 14.3624 7.6294 4.9770 23 1 14.2836 5.2093 4.8456 24 6 9.2364 6.3871 3.7919 25 6 7.8954 6.4118 3.4851 26 7 7.3787 5.5633 2.6147 27 6 3.9814 2.9983 -0.0011 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3635 0.5139 -0.8899 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 4.1305 -0.2050 0.6133 34 1 4.6356 0.3236 -1.0208 35 1 6.5802 0.8904 0.2746 36 1 5.5967 1.3725 1.6976 37 1 8.0543 3.1710 0.5655 38 1 10.0717 3.8137 1.7222 39 1 12.0193 8.5132 3.9855 40 1 9.6477 7.0825 4.5086 41 1 7.2536 7.1342 3.9676 42 1 3.6688 3.5546 0.8826 43 1 3.6974 3.5431 -0.9015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533449707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:30 Heat of formation + Delta-G solvation = -36.733528 kcal Electronic energy + Delta-G solvation = -25544.162751 eV Core-core repulsion = 21782.109803 eV Total energy + Delta-G solvation = -3762.052949 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.58141 -39.53915 -38.15844 -36.99553 -34.52841 -33.63273 -33.14849 -31.84398 -30.70367 -29.40683 -28.55277 -26.04166 -25.57351 -23.25997 -22.77490 -21.86327 -21.11271 -19.47264 -19.34566 -17.95665 -17.55455 -17.28580 -16.02557 -15.93690 -15.60044 -15.18840 -15.00426 -14.62508 -14.24385 -14.02862 -13.85410 -13.79493 -13.37026 -13.07133 -13.01965 -12.54907 -12.51920 -12.38205 -12.32102 -12.03636 -11.89474 -11.57316 -11.45898 -11.42200 -11.25661 -11.09705 -10.99632 -10.42162 -10.06182 -9.99774 -9.81053 -9.51526 -9.37027 -8.82210 -8.00851 -7.80594 -7.08464 -6.74465 -4.67292 2.46304 2.48337 2.70721 2.73202 3.00875 3.04236 3.10214 3.37069 3.46868 3.85652 4.08859 4.21829 4.50716 4.62269 4.68317 4.77720 4.80827 4.97892 4.99191 5.09560 5.16041 5.28003 5.47528 5.49857 5.60584 5.62617 5.69700 5.78277 5.92614 5.95209 6.00234 6.08029 6.49483 6.52098 6.72321 6.88439 7.11924 7.30158 7.33660 7.45188 7.71051 7.88301 8.00338 8.13128 8.41947 8.61268 8.72965 8.77258 9.61088 10.13012 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.038557 B = 0.002270 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.032672 B =12332.646863 C =12787.167898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.524 3.476 4 O -0.538 6.538 5 N -0.621 5.621 6 C 0.100 3.900 7 C -0.123 4.123 8 C -0.123 4.123 9 H 0.109 0.891 10 C 0.507 3.493 11 O -0.472 6.472 12 N -0.657 5.657 13 C 0.343 3.657 14 C -0.294 4.294 15 C 0.145 3.855 16 C -0.460 4.460 17 H 0.080 0.920 18 C 0.074 3.926 19 N -0.800 5.800 20 Si 0.918 3.082 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.262 1.262 24 C -0.212 4.212 25 C 0.100 3.900 26 N -0.548 5.548 27 C 0.119 3.881 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.406 0.594 38 H 0.103 0.897 39 H 0.282 0.718 40 H 0.132 0.868 41 H 0.125 0.875 42 H 0.092 0.908 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.656 -16.013 -8.078 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.313 3.687 4 O -0.414 6.414 5 N -0.357 5.357 6 C -0.023 4.023 7 C -0.161 4.161 8 C -0.145 4.145 9 H 0.127 0.873 10 C 0.290 3.710 11 O -0.341 6.341 12 N -0.303 5.303 13 C 0.115 3.885 14 C -0.320 4.320 15 C 0.136 3.864 16 C -0.492 4.492 17 H 0.098 0.902 18 C -0.144 4.144 19 N -0.426 5.426 20 Si 0.743 3.257 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.186 1.186 24 C -0.235 4.235 25 C -0.051 4.051 26 N -0.267 5.267 27 C -0.003 4.003 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.241 0.759 38 H 0.121 0.879 39 H 0.093 0.907 40 H 0.150 0.850 41 H 0.142 0.858 42 H 0.111 0.889 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.611 -14.636 -7.789 19.685 hybrid contribution 2.342 -0.278 -0.063 2.359 sum -8.270 -14.914 -7.852 18.774 Atomic orbital electron populations 1.21542 0.92959 1.01548 1.03489 1.21613 0.98575 0.93498 1.04168 1.20484 0.80217 0.91974 0.76009 1.90727 1.54281 1.46773 1.49648 1.48556 1.05263 1.08041 1.73790 1.22371 0.86995 0.91736 1.01150 1.22805 0.98351 0.93057 1.01916 1.22354 0.96190 0.95345 1.00635 0.87266 1.20172 0.82495 0.85381 0.82920 1.90818 1.62419 1.36058 1.44793 1.43387 1.07046 1.38623 1.41249 1.18015 0.88565 0.90747 0.91169 1.21318 0.92681 1.09736 1.08288 1.17634 0.93271 0.88654 0.86830 1.19500 0.92998 0.94618 1.42093 0.90224 1.25934 1.01256 0.94883 0.92338 1.69719 1.38104 0.99286 1.35524 0.86165 0.81442 0.78939 0.79197 1.19358 1.20144 1.18586 1.22382 0.92759 1.04188 1.04209 1.21965 0.93371 0.95418 0.94360 1.67217 1.38476 1.07495 1.13541 1.21786 0.89727 0.84567 1.04252 0.92047 0.91893 0.91967 0.89031 0.88967 0.90121 0.90777 0.88721 0.89687 0.75912 0.87925 0.90723 0.84981 0.85769 0.88942 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.20 37.15 0.34 -0.74 16 2 C -0.14 -1.04 5.43 -27.88 -0.15 -1.19 16 3 C 0.52 6.34 7.85 -10.98 -0.09 6.25 16 4 O -0.54 -8.90 16.31 5.56 0.09 -8.81 16 5 N -0.62 -6.82 3.33 -170.52 -0.57 -7.39 16 6 C 0.10 0.70 6.69 -2.52 -0.02 0.68 16 7 C -0.12 -1.00 6.52 -24.58 -0.16 -1.16 16 8 C -0.12 -1.36 3.34 -89.94 -0.30 -1.66 16 9 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 10 C 0.51 8.51 7.09 -10.98 -0.08 8.43 16 11 O -0.47 -10.34 13.67 5.56 0.08 -10.27 16 12 N -0.66 -11.16 5.39 -11.49 -0.06 -11.23 16 13 C 0.34 7.73 7.42 -154.71 -1.15 6.58 16 14 C -0.29 -6.81 9.73 -38.47 -0.37 -7.19 16 15 C 0.14 3.72 5.57 -106.55 -0.59 3.13 16 16 C -0.46 -11.62 9.11 -37.65 -0.34 -11.96 16 17 H 0.08 1.90 7.85 -52.49 -0.41 1.49 16 18 C 0.07 1.77 5.40 -17.34 -0.09 1.68 16 19 N -0.80 -20.06 10.73 55.55 0.60 -19.46 16 20 Si 0.92 17.96 29.56 -169.99 -5.02 12.93 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 24 C -0.21 -5.45 8.75 -38.70 -0.34 -5.79 16 25 C 0.10 2.48 11.15 -17.68 -0.20 2.28 16 26 N -0.55 -13.75 7.85 -12.52 -0.10 -13.85 16 27 C 0.12 1.56 6.30 -3.07 -0.02 1.54 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 30 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.54 7.85 -51.93 -0.41 0.13 16 33 H 0.08 0.41 7.48 -51.93 -0.39 0.03 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 37 H 0.41 5.11 8.70 -40.82 -0.36 4.75 16 38 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 39 H 0.28 6.45 8.29 -40.82 -0.34 6.11 16 40 H 0.13 3.46 6.29 -52.49 -0.33 3.13 16 41 H 0.12 2.78 8.06 -52.48 -0.42 2.35 16 42 H 0.09 1.54 6.80 -51.93 -0.35 1.19 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -34.35 360.16 -9.14 -43.49 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.02 Total: 8.28 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -3.56 Total: 0.88 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.13 Total: -51.93 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.17 Total: -19.08 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.02 Total: 12.93 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.35 -9.14 -43.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533449707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.755 kcal (2) G-P(sol) polarization free energy of solvation -34.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds