Wall clock time and date at job start Tue Mar 31 2020 12:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50709 * 109.46809 * 2 1 4 4 O 1.21280 * 120.00052 * 0.02562 * 3 2 1 5 5 N 1.34775 * 119.99861 * 180.02562 * 3 2 1 6 6 C 1.47430 * 125.64634 * 0.04427 * 5 3 2 7 7 C 1.54914 * 104.82943 * 204.09042 * 6 5 3 8 8 C 1.55157 * 101.58083 * 322.98974 * 7 6 5 9 9 H 1.08994 * 110.87556 * 277.06417 * 8 7 6 10 10 C 1.50701 * 110.71855 * 153.86517 * 8 7 6 11 11 O 1.21274 * 120.00178 * 246.47860 * 10 8 7 12 12 N 1.34777 * 120.00171 * 66.47351 * 10 8 7 13 13 C 1.39472 * 120.00183 * 184.88574 * 12 10 8 14 14 C 1.38598 * 119.57653 * 174.58179 * 13 12 10 15 15 C 1.40816 * 118.79461 * 180.02562 * 14 13 12 16 16 C 1.41543 * 120.99864 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99778 * 327.29073 * 16 15 14 18 18 C 1.40031 * 119.99870 * 147.29140 * 16 15 14 19 19 N 1.30743 * 120.00226 * 359.62314 * 18 16 15 20 20 Si 1.86798 * 119.99796 * 179.61889 * 18 16 15 21 21 H 1.48502 * 109.47042 * 84.99710 * 20 18 16 22 22 H 1.48500 * 109.47311 * 204.99894 * 20 18 16 23 23 H 1.48499 * 109.47199 * 324.99963 * 20 18 16 24 24 C 1.41179 * 118.00285 * 0.24991 * 15 14 13 25 25 C 1.37585 * 119.01512 * 359.52028 * 24 15 14 26 26 N 1.32083 * 121.11242 * 0.49595 * 25 24 15 27 27 C 1.47015 * 125.64996 * 179.97438 * 5 3 2 28 28 H 1.09001 * 109.47256 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46897 * 299.99940 * 1 2 3 30 30 H 1.08997 * 109.47960 * 59.99459 * 1 2 3 31 31 H 1.08997 * 109.47057 * 240.00222 * 2 1 3 32 32 H 1.08995 * 109.47434 * 119.99996 * 2 1 3 33 33 H 1.08994 * 110.36981 * 322.92503 * 6 5 3 34 34 H 1.09003 * 110.36869 * 85.25561 * 6 5 3 35 35 H 1.08999 * 111.00417 * 204.91497 * 7 6 5 36 36 H 1.09000 * 111.00275 * 81.06608 * 7 6 5 37 37 H 0.97003 * 119.99605 * 4.89070 * 12 10 8 38 38 H 1.07997 * 120.60799 * 359.97438 * 14 13 12 39 39 H 0.96997 * 120.00089 * 179.97438 * 19 18 16 40 40 H 1.07998 * 120.48686 * 179.72933 * 24 15 14 41 41 H 1.08005 * 119.44478 * 180.20342 * 25 24 15 42 42 H 1.09002 * 109.87899 * 59.56129 * 27 5 3 43 43 H 1.08997 * 110.01312 * 298.47092 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6672 -0.0005 6 6 4.4209 0.6464 -0.0020 7 6 5.6540 1.3576 0.6092 8 6 5.5100 2.7878 0.0250 9 1 5.9233 2.8393 -0.9822 10 6 6.1726 3.8000 0.9235 11 8 5.5018 4.6273 1.5033 12 7 7.5109 3.7857 1.0829 13 6 8.1143 4.6549 1.9915 14 6 9.4758 4.5565 2.2316 15 6 10.0678 5.4420 3.1526 16 6 11.4539 5.3824 3.4334 17 1 11.9698 4.4340 3.4074 18 6 12.1560 6.5532 3.7450 19 7 11.5330 7.7023 3.7693 20 14 13.9830 6.4731 4.1260 21 1 14.7554 6.5167 2.8584 22 1 14.3624 7.6294 4.9770 23 1 14.2836 5.2093 4.8456 24 6 9.2364 6.3871 3.7919 25 6 7.8954 6.4118 3.4851 26 7 7.3787 5.5633 2.6147 27 6 3.9814 2.9983 -0.0011 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3635 0.5139 -0.8899 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 4.1305 -0.2050 0.6133 34 1 4.6356 0.3236 -1.0208 35 1 6.5802 0.8904 0.2746 36 1 5.5967 1.3725 1.6976 37 1 8.0543 3.1710 0.5655 38 1 10.0717 3.8137 1.7222 39 1 12.0193 8.5132 3.9855 40 1 9.6477 7.0825 4.5086 41 1 7.2536 7.1342 3.9676 42 1 3.6688 3.5546 0.8826 43 1 3.6974 3.5431 -0.9015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533449707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:30 Heat of formation + Delta-G solvation = -59.785310 kcal Electronic energy + Delta-G solvation = -25545.162352 eV Core-core repulsion = 21782.109803 eV Total energy + Delta-G solvation = -3763.052549 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.71392 -40.82556 -39.71410 -38.11093 -36.23935 -35.34521 -33.91358 -32.74770 -32.58670 -30.44461 -30.02232 -27.91674 -26.52432 -24.36914 -23.71346 -23.55219 -22.57066 -20.83104 -20.15640 -19.66974 -18.68627 -18.16051 -17.70841 -17.04891 -16.83679 -16.52465 -16.24491 -16.03460 -15.87256 -15.44226 -15.22837 -14.68384 -14.56177 -14.48400 -14.19064 -13.97159 -13.84181 -13.29773 -13.20007 -13.14063 -12.91733 -12.88586 -12.78558 -12.58571 -12.38415 -12.10839 -12.06325 -11.84885 -11.83103 -11.48489 -11.20691 -10.95700 -10.93799 -9.92009 -9.72873 -9.62831 -8.87770 -8.55958 -6.59989 0.72282 0.95468 1.41810 1.53171 1.55646 1.60123 1.77521 1.86275 2.19781 2.25466 2.83967 3.25272 3.42970 3.63312 3.72796 3.76592 4.07878 4.17288 4.22592 4.25670 4.30737 4.33229 4.60688 4.69608 4.73610 4.78722 4.83925 4.86471 4.93552 4.95874 4.99795 5.03973 5.06393 5.14716 5.22239 5.26966 5.36808 5.43733 5.63312 5.97962 6.11865 6.43809 6.49604 6.60679 6.79571 6.84357 7.12569 7.28248 7.81129 8.33460 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.038557 B = 0.002270 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.032672 B =12332.646863 C =12787.167898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.511 3.489 4 O -0.599 6.599 5 N -0.621 5.621 6 C 0.099 3.901 7 C -0.117 4.117 8 C -0.104 4.104 9 H 0.151 0.849 10 C 0.504 3.496 11 O -0.531 6.531 12 N -0.642 5.642 13 C 0.342 3.658 14 C -0.298 4.298 15 C 0.115 3.885 16 C -0.485 4.485 17 H 0.089 0.911 18 C 0.030 3.970 19 N -0.832 5.832 20 Si 0.994 3.006 21 H -0.261 1.261 22 H -0.272 1.272 23 H -0.254 1.254 24 C -0.233 4.233 25 C 0.092 3.908 26 N -0.576 5.576 27 C 0.118 3.882 28 H 0.091 0.909 29 H 0.039 0.961 30 H 0.045 0.955 31 H 0.126 0.874 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.136 0.864 36 H 0.062 0.938 37 H 0.430 0.570 38 H 0.131 0.869 39 H 0.288 0.712 40 H 0.118 0.882 41 H 0.135 0.865 42 H 0.044 0.956 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.798 -19.798 -9.818 23.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.302 3.698 4 O -0.480 6.480 5 N -0.355 5.355 6 C -0.021 4.021 7 C -0.155 4.155 8 C -0.126 4.126 9 H 0.168 0.832 10 C 0.290 3.710 11 O -0.403 6.403 12 N -0.290 5.290 13 C 0.113 3.887 14 C -0.324 4.324 15 C 0.107 3.893 16 C -0.516 4.516 17 H 0.107 0.893 18 C -0.185 4.185 19 N -0.459 5.459 20 Si 0.815 3.185 21 H -0.186 1.186 22 H -0.196 1.196 23 H -0.178 1.178 24 C -0.256 4.256 25 C -0.059 4.059 26 N -0.295 5.295 27 C -0.006 4.006 28 H 0.110 0.890 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.144 0.856 32 H 0.135 0.865 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.155 0.845 36 H 0.081 0.919 37 H 0.269 0.731 38 H 0.149 0.851 39 H 0.099 0.901 40 H 0.136 0.864 41 H 0.153 0.847 42 H 0.062 0.938 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.726 -18.502 -9.567 22.583 hybrid contribution 1.686 0.912 0.465 1.973 sum -7.040 -17.590 -9.102 21.020 Atomic orbital electron populations 1.21564 0.93691 1.02813 1.01610 1.21689 0.97856 0.90305 1.06849 1.21513 0.80084 0.93450 0.74729 1.90698 1.55908 1.48928 1.52437 1.48710 1.05945 1.08059 1.72807 1.22739 0.84662 0.90990 1.03759 1.22921 1.01130 0.90849 1.00642 1.22312 0.93799 0.95234 1.01262 0.83170 1.21209 0.81928 0.85396 0.82430 1.90806 1.63556 1.38706 1.47280 1.43326 1.07607 1.37838 1.40234 1.18330 0.88769 0.90460 0.91102 1.21535 0.93177 1.09787 1.07879 1.18064 0.94055 0.89463 0.87716 1.19832 0.93111 0.95600 1.43065 0.89272 1.26909 1.06080 0.94073 0.91437 1.69809 1.40188 1.00141 1.35716 0.85021 0.75129 0.79204 0.79176 1.18587 1.19636 1.17769 1.22312 0.93255 1.05003 1.05059 1.22173 0.93366 0.95810 0.94553 1.67327 1.39334 1.08538 1.14343 1.21590 0.91537 0.85836 1.01669 0.89028 0.94209 0.93575 0.85607 0.86492 0.87416 0.87157 0.84546 0.91942 0.73092 0.85103 0.90095 0.86377 0.84726 0.93799 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.20 71.98 0.66 -1.34 16 2 C -0.13 -1.53 5.43 29.85 0.16 -1.37 16 3 C 0.51 11.98 7.85 87.66 0.69 12.66 16 4 O -0.60 -20.84 16.31 -3.03 -0.05 -20.89 16 5 N -0.62 -12.56 3.33 -811.78 -2.70 -15.26 16 6 C 0.10 0.89 6.69 86.86 0.58 1.48 16 7 C -0.12 -1.43 6.52 31.99 0.21 -1.22 16 8 C -0.10 -2.07 3.34 -10.35 -0.03 -2.10 16 9 H 0.15 1.85 8.14 -2.39 -0.02 1.83 16 10 C 0.50 16.67 7.09 87.66 0.62 17.29 16 11 O -0.53 -24.27 13.67 -3.01 -0.04 -24.31 16 12 N -0.64 -20.87 5.39 -308.66 -1.66 -22.54 16 13 C 0.34 15.43 7.42 132.75 0.98 16.41 16 14 C -0.30 -13.69 9.73 22.99 0.22 -13.46 16 15 C 0.12 6.05 5.57 -21.11 -0.12 5.93 16 16 C -0.48 -24.53 9.11 23.52 0.21 -24.31 16 17 H 0.09 4.19 7.85 -2.91 -0.02 4.17 16 18 C 0.03 1.43 5.40 85.29 0.46 1.89 16 19 N -0.83 -42.48 10.73 21.84 0.23 -42.25 16 20 Si 0.99 36.12 29.56 68.60 2.03 38.14 16 21 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 22 H -0.27 -9.56 7.11 99.48 0.71 -8.86 16 23 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 24 C -0.23 -12.46 8.75 22.84 0.20 -12.26 16 25 C 0.09 4.77 11.15 84.50 0.94 5.71 16 26 N -0.58 -29.77 7.85 -193.53 -1.52 -31.29 16 27 C 0.12 3.09 6.30 86.73 0.55 3.64 16 28 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.04 0.74 8.10 -2.38 -0.02 0.72 16 30 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 31 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.12 0.87 7.85 -2.39 -0.02 0.86 16 33 H 0.11 0.48 7.48 -2.39 -0.02 0.46 16 34 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.06 1.09 8.04 -2.39 -0.02 1.07 16 37 H 0.43 9.40 8.70 -92.71 -0.81 8.59 16 38 H 0.13 5.09 8.06 -2.91 -0.02 5.07 16 39 H 0.29 13.38 8.29 -92.71 -0.77 12.61 16 40 H 0.12 6.53 6.29 -2.91 -0.02 6.51 16 41 H 0.14 6.38 8.06 -2.91 -0.02 6.35 16 42 H 0.04 1.59 6.80 -2.39 -0.02 1.57 16 43 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -83.05 360.16 2.86 -80.18 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 0.23 Total: 29.24 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 6.34 Total: 8.95 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -5.65 Total: -111.33 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -0.09 Total: -45.19 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.14 kcal Total: -83.05 2.86 -80.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533449707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.399 kcal (2) G-P(sol) polarization free energy of solvation -83.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds